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Cmc04g0108571 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0108571
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationCMiso1.1chr04:28100696..28101385
RNA-Seq ExpressionCmc04g0108571
SyntenyCmc04g0108571
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032398.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.2e-3687.64Show/hide
Query:  MDTNATRQSLHVSSIVDTGNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT
        MDTN TRQSLHVSSIVD GNAIDVF+TNAPTP N HAM+TR KSGIFKPKAF+IT TIPTPTSYTEASKYPEW+NAMCEEFN LQAQGT
Subjt:  MDTNATRQSLHVSSIVDTGNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT

KAA0034958.1 putative mitochondrial protein [Cucumis melo var. makuwa]9.6e-41100Show/hide
Query:  MDTNATRQSLHVSSIVDTGNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQ
        MDTNATRQSLHVSSIVDTGNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQ
Subjt:  MDTNATRQSLHVSSIVDTGNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQ

KAA0045362.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.7e-3761.69Show/hide
Query:  TLFPFAQSSPSSPSHTKSISDPNLLLTLLNLPQSSNSTSSQSPTSNSF-----TVDNTCTPSMDTNATRQSLHVSSIVDTGNAIDVFSTN---APTPRNA
        T+FP+A S+ SSPS + SIS+P++LLTLLN+PQ +   S   P   S      TVD TC+  MDTNAT QSL+VSS VDTGN I+  + N    P PRN 
Subjt:  TLFPFAQSSPSSPSHTKSISDPNLLLTLLNLPQSSNSTSSQSPTSNSF-----TVDNTCTPSMDTNATRQSLHVSSIVDTGNAIDVFSTN---APTPRNA

Query:  HAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT
        HAM+TR KS IFKPKAF+IT  +PTPTSYTEASKYPEW+ AM EEFN LQAQGT
Subjt:  HAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT

KAA0067320.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.8e-3485.39Show/hide
Query:  MDTNATRQSLHVSSIVDTGNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT
        MDTN T QSL+VSSIVDTGNAIDVF+TNAPTPRN HAM+TR KSGIFKPKAF+IT TIPT TSYTE SKYPEW+NAMCEEFN LQAQGT
Subjt:  MDTNATRQSLHVSSIVDTGNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT

PKU68330.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum]1.2e-3038.33Show/hide
Query:  MPSPSLHMLPPFEKLFGNTLDLRYLKVFGCACYPLLKPYTKHKLESKTTQHILLGYPHNFKGYLCYNPSTKQTIVSRNIIFHETLFPFAQSSPSSPSHTK
        +PS SL    P+ KL G      +L++FGC C+P LKPYT +KL  ++ +   LGY    KGY CYN ST +  +SR+++FHE  FP+A  S  +PS   
Subjt:  MPSPSLHMLPPFEKLFGNTLDLRYLKVFGCACYPLLKPYTKHKLESKTTQHILLGYPHNFKGYLCYNPSTKQTIVSRNIIFHETLFPFAQSSPSSPSHTK

Query:  SISDPN--LLL---TLLNLPQSSNSTSSQSP---TSNSFTVDNTCTPSMDTNATRQSLHVSSIVDTGNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKA-
          S P   LLL   + +N  Q  ++TS+ SP   T+   T+ +  +  ++++ T  S H        +  D  +T+AP    +H M TR KSGI KP+  
Subjt:  SISDPN--LLL---TLLNLPQSSNSTSSQSP---TSNSFTVDNTCTPSMDTNATRQSLHVSSIVDTGNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKA-

Query:  --FYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT
             T T PTP +YT+A+K+  W++AM  EF  LQ QGT
Subjt:  --FYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT

TrEMBL top hitse value%identityAlignment
A0A2N9F5R3 Integrase catalytic domain-containing protein1.3e-3541.7Show/hide
Query:  MPSPSLHMLPPFEKLFGNTLDLRYLKVFGCACYPLLKPYTKHKLESKTTQHILLGYPHNFKGYLCYNPSTKQTIVSRNIIFHETLFP------FAQSSPS
        +P+P+L    P+E LF    D++YL+ FGC C+PLL  YT HKL  KT   + LGYP N KGYLC +P  K+   SR+++F+E +FP       + +S S
Subjt:  MPSPSLHMLPPFEKLFGNTLDLRYLKVFGCACYPLLKPYTKHKLESKTTQHILLGYPHNFKGYLCYNPSTKQTIVSRNIIFHETLFP------FAQSSPS

Query:  SPSHTKSISDPNLLLTLLNLPQSSNSTSSQSPTSNSF--TVDNTCTPSMDTNATRQSLHV-SSIVDTGNAIDVFS----TNAPTPRNAHAMRTRTKSGIF
          S + +IS    L TLL L   S+ST+   P S  +   V     P   T     SL   SSI    + I V S     +AP     H M+TR+K GIF
Subjt:  SPSHTKSISDPNLLLTLLNLPQSSNSTSSQSPTSNSF--TVDNTCTPSMDTNATRQSLHV-SSIVDTGNAIDVFS----TNAPTPRNAHAMRTRTKSGIF

Query:  KPKAFYITIT-----IPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT
        KPK  Y+  T     I  P+SYT ASK+P+W  AM EEF  LQ QGT
Subjt:  KPKAFYITIT-----IPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT

A0A2N9GDM9 Integrase catalytic domain-containing protein3.8e-3539.47Show/hide
Query:  MPSPSLHMLPPFEKLFGNTLDLRYLKVFGCACYPLLKPYTKHKLESKTTQHILLGYPHNFKGYLCYNPSTKQTIVSRNIIFHETLFP-FAQSSPSSPSHT
        +P+P+L    P+E LF    DL YL+ FGC C+PLL PYT HKL  KTT  + +GYP + KGYLC +P TK+  VSR+++F+ET+FP    S+ +  S  
Subjt:  MPSPSLHMLPPFEKLFGNTLDLRYLKVFGCACYPLLKPYTKHKLESKTTQHILLGYPHNFKGYLCYNPSTKQTIVSRNIIFHETLFP-FAQSSPSSPSHT

Query:  KSISDPNLLLT-------------LLNLPQSSNSTSSQSPTSNSFTVDNTCTPSMDTNATRQSLHVSS------------IVDTGNAIDVFSTNAPTPR-
          I  PN  +T             L  LP  SN T+S + TS    + N+  PS  ++A   S    S               T     +  T  PTP  
Subjt:  KSISDPNLLLT-------------LLNLPQSSNSTSSQSPTSNSFTVDNTCTPSMDTNATRQSLHVSS------------IVDTGNAIDVFSTNAPTPR-

Query:  -------NAHAMRTRTKSGIFKPK---AFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT
               N H M+TR+K+GIFKPK   A +   T+  PT+Y  ASK+P+W NAM EEF  LQ QGT
Subjt:  -------NAHAMRTRTKSGIFKPK---AFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT

A0A5A7SPD4 Putative mitochondrial protein1.6e-3687.64Show/hide
Query:  MDTNATRQSLHVSSIVDTGNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT
        MDTN TRQSLHVSSIVD GNAIDVF+TNAPTP N HAM+TR KSGIFKPKAF+IT TIPTPTSYTEASKYPEW+NAMCEEFN LQAQGT
Subjt:  MDTNATRQSLHVSSIVDTGNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT

A0A5A7TPR4 Putative mitochondrial protein8.2e-3861.69Show/hide
Query:  TLFPFAQSSPSSPSHTKSISDPNLLLTLLNLPQSSNSTSSQSPTSNSF-----TVDNTCTPSMDTNATRQSLHVSSIVDTGNAIDVFSTN---APTPRNA
        T+FP+A S+ SSPS + SIS+P++LLTLLN+PQ +   S   P   S      TVD TC+  MDTNAT QSL+VSS VDTGN I+  + N    P PRN 
Subjt:  TLFPFAQSSPSSPSHTKSISDPNLLLTLLNLPQSSNSTSSQSPTSNSF-----TVDNTCTPSMDTNATRQSLHVSSIVDTGNAIDVFSTN---APTPRNA

Query:  HAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT
        HAM+TR KS IFKPKAF+IT  +PTPTSYTEASKYPEW+ AM EEFN LQAQGT
Subjt:  HAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQGT

A0A5D3DCL6 Putative mitochondrial protein4.7e-41100Show/hide
Query:  MDTNATRQSLHVSSIVDTGNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQ
        MDTNATRQSLHVSSIVDTGNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQ
Subjt:  MDTNATRQSLHVSSIVDTGNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEEFNTLQAQ

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-0524.88Show/hide
Query:  YLKVFGCACYPLLKPYTKHKLESKTTQHILLGYPHNFKGYLCYNPSTKQTIVSRNIIFHETLFPFAQSSPSSPSHTKSISDPNLLLTLLNLPQSSNSTSS
        +LKVFGC  +  +    + KL+ K+   I +GY     GY  ++P  K+ I SR+++F E+     +++       K+   PN     + +P +SN    
Subjt:  YLKVFGCACYPLLKPYTKHKLESKTTQHILLGYPHNFKGYLCYNPSTKQTIVSRNIIFHETLFPFAQSSPSSPSHTKSISDPNLLLTLLNLPQSSNSTSS

Query:  QSPTSNSFTVDNTCTPSMDTNATRQSLHVSSIVDTGNAID--VFSTNAPTPRN------AHAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPE---
         +PTS   T D           + Q      +++ G  +D  V     PT           + R R +S  +    + +      P S  E   +PE   
Subjt:  QSPTSNSFTVDNTCTPSMDTNATRQSLHVSSIVDTGNAID--VFSTNAPTPRN------AHAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPE---

Query:  WQNAMCEEFNTLQAQGT
           AM EE  +LQ  GT
Subjt:  WQNAMCEEFNTLQAQGT

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.1e-1528.89Show/hide
Query:  MPSPSLHMLPPFEKLFGNTLDLRYLKVFGCACYPLLKPYTKHKLESKTTQHILLGYPHNFKGYLCYNPSTKQTIVSRNIIFHETLFPF----AQSSPSSP
        +P+P L +  PF+KLFG + +   L+VFGCACYP L+PY +HKL+ K+ Q + LGY      YLC +  T +  +SR++ F E  FPF    A  SP   
Subjt:  MPSPSLHMLPPFEKLFGNTLDLRYLKVFGCACYPLLKPYTKHKLESKTTQHILLGYPHNFKGYLCYNPSTKQTIVSRNIIFHETLFPF----AQSSPSSP

Query:  SHTKS--ISDPNLLL----TLLNLPQSSNSTSSQSPTSN-SFTVDNTCTPSMDTNATRQSLHVSSIVDTG---NAIDVFSTNAPTPRNAHAMRTRTKSGI
           +S  +  P+  L     +L  P  S+   + +P S+ S    N+   S + +++  S   SS   T    N     +    T    H+ +  +++  
Subjt:  SHTKS--ISDPNLLL----TLLNLPQSSNSTSSQSPTSN-SFTVDNTCTPSMDTNATRQSLHVSSIVDTG---NAIDVFSTNAPTPRNAHAMRTRTKSGI

Query:  FKPKAFYITITIPTPTSYTEASKYP
               +  ++ TP   + +S  P
Subjt:  FKPKAFYITITIPTPTSYTEASKYP

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.4e-1831.43Show/hide
Query:  MPSPSLHMLPPFEKLFGNTLDLRYLKVFGCACYPLLKPYTKHKLESKTTQHILLGYPHNFKGYLCYNPSTKQTIVSRNIIFHETLFPF------------
        +P+P L +  PF+KLFG   +   LKVFGCACYP L+PY +HKLE K+ Q   +GY      YLC +  T +   SR++ F E  FPF            
Subjt:  MPSPSLHMLPPFEKLFGNTLDLRYLKVFGCACYPLLKPYTKHKLESKTTQHILLGYPHNFKGYLCYNPSTKQTIVSRNIIFHETLFPF------------

Query:  --AQSSPSSPSHTKSISDPNLL---------------------------LTLLNLPQSS-NSTSSQSPTSNSFTVDNTCTPSMDTNATRQSLHVSSIVDT
          + S+P+ PSHT   + P +L                           ++  NLP SS +S SS  PT+ S    N   P+   + T+ S   S I++ 
Subjt:  --AQSSPSSPSHTKSISDPNLL---------------------------LTLLNLPQSS-NSTSSQSPTSNSFTVDNTCTPSMDTNATRQSLHVSSIVDT

Query:  GNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKAFYITITIPTPTS
         N       N+P+P + +      +S I  P        IPTP++
Subjt:  GNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKAFYITITIPTPTS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTCACCCTCTCTTCACATGTTGCCACCATTTGAAAAGCTTTTTGGTAATACTCTTGATTTGCGTTATTTAAAAGTTTTTGGATGTGCATGTTATCCCCTTCTAAA
ACCCTACACCAAACACAAACTTGAATCCAAAACCACACAACACATACTTTTAGGCTATCCTCACAATTTTAAAGGTTATCTCTGTTATAATCCATCAACCAAACAAACCA
TTGTTTCACGAAATATTATCTTTCATGAAACACTTTTTCCCTTTGCCCAATCCTCTCCTTCTTCTCCATCTCACACTAAATCCATCTCTGACCCCAACCTACTACTCACC
TTACTAAACCTTCCACAATCTTCAAACTCTACATCCTCACAATCTCCCACTTCTAACTCTTTCACTGTTGACAATACTTGCACACCTTCTATGGATACTAATGCCACTCG
TCAGTCTTTGCATGTTTCATCTATTGTGGATACAGGAAATGCAATAGATGTTTTCTCCACCAATGCACCAACTCCTCGTAACGCTCATGCCATGCGAACTCGGACAAAAT
CAGGAATTTTTAAACCAAAGGCTTTCTATATCACAATAACAATTCCAACTCCCACATCCTACACTGAAGCCTCCAAGTATCCTGAATGGCAAAACGCAATGTGTGAGGAA
TTTAATACTCTTCAAGCACAAGGTACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCTCACCCTCTCTTCACATGTTGCCACCATTTGAAAAGCTTTTTGGTAATACTCTTGATTTGCGTTATTTAAAAGTTTTTGGATGTGCATGTTATCCCCTTCTAAA
ACCCTACACCAAACACAAACTTGAATCCAAAACCACACAACACATACTTTTAGGCTATCCTCACAATTTTAAAGGTTATCTCTGTTATAATCCATCAACCAAACAAACCA
TTGTTTCACGAAATATTATCTTTCATGAAACACTTTTTCCCTTTGCCCAATCCTCTCCTTCTTCTCCATCTCACACTAAATCCATCTCTGACCCCAACCTACTACTCACC
TTACTAAACCTTCCACAATCTTCAAACTCTACATCCTCACAATCTCCCACTTCTAACTCTTTCACTGTTGACAATACTTGCACACCTTCTATGGATACTAATGCCACTCG
TCAGTCTTTGCATGTTTCATCTATTGTGGATACAGGAAATGCAATAGATGTTTTCTCCACCAATGCACCAACTCCTCGTAACGCTCATGCCATGCGAACTCGGACAAAAT
CAGGAATTTTTAAACCAAAGGCTTTCTATATCACAATAACAATTCCAACTCCCACATCCTACACTGAAGCCTCCAAGTATCCTGAATGGCAAAACGCAATGTGTGAGGAA
TTTAATACTCTTCAAGCACAAGGTACTTGA
Protein sequenceShow/hide protein sequence
MPSPSLHMLPPFEKLFGNTLDLRYLKVFGCACYPLLKPYTKHKLESKTTQHILLGYPHNFKGYLCYNPSTKQTIVSRNIIFHETLFPFAQSSPSSPSHTKSISDPNLLLT
LLNLPQSSNSTSSQSPTSNSFTVDNTCTPSMDTNATRQSLHVSSIVDTGNAIDVFSTNAPTPRNAHAMRTRTKSGIFKPKAFYITITIPTPTSYTEASKYPEWQNAMCEE
FNTLQAQGT