CuGenDBv2

Gene ID	Cmc04g0108641
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Genome location	CMiso1.1chr04:28173407..28174234
RNA-Seq Expression	Cmc04g0108641
Synteny	Cmc04g0108641
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0032842.1 hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa]

1.2e-141

91.3

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
        MDVKT FLNGDL EEIY+EQPEGFIVHDQESK+CKLDKSLY LKQAPKQ HEKFDNLLMSKGFKVNESDKCIYYK EGRLCIIICLYVDDMLIFGSNLHV
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV

Query:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA
         NDVKSMLNVNFDMKDLGEADVILGIKITR ENGI LDQSHYIEKILKKYNYFDSKP CTPYDSS+KLFKNTGDSVNQ+EYASIIGSLRY  DCTR DIA
Subjt:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA

Query:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA
        Y VGLLCRFTSRPSLEHWNAIERVMRYLKK QNLGLHYNKFPAVLEGY+DADWNS SDD KATSGYIFNI G  VA
Subjt:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA

KAA0036533.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]

5.6e-136

86.96

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
        MDVKT FLNGDLEEEIY+EQPEGFIV  QESK+CKLDKSLYGLKQAPK+WH+KFDNLLMSKGFKVNES+KCIYYKT+GRLCIIICLYVDDMLIFGSNLH+
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV

Query:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA
         NDVKSML+ NFDMKDLGEADVIL IKITRTENGIFLDQSHYIEKILKKYNYFDSK   TPYDSS+KLFKNT DSVNQ+EYASIIGS+RY  DCT+ DIA
Subjt:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA

Query:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA
        Y VGLL RFTSRPSLEHWNAI RVMRYL+KTQ+LGLHYNKFP V EGY+DADWNSLSD+ KATSGYIFNI GGAVA
Subjt:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA

KAA0058878.1 putative polyprotein [Cucumis melo var. makuwa]

1.6e-135

86.59

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
        MDVKT FLNGDLEEEIY+EQPE FIVH QE K+CKLDKSLYGL+QAPKQ HEKFD LLMSKGFKVNESDKC+YYKT+GRLCIIICLYVDDML F SNLHV
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV

Query:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA
         NDVKSML+VNFDMKDLGEAD+ILGIKITRT+NGI LDQS+YIEKILKKYNYFDSKP CTPYDSS+KLFKNTGD+VNQ+EY SIIGSLRY  DCTR DIA
Subjt:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA

Query:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA
        Y VGLLCRFTSRP LEHWNAIER+MRYLKKTQNLGLHYNKF  VLEGY+D DWNSLSDD KATSGYIFNI GG VA
Subjt:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA

KAA0060459.1 hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa]

5.4e-147

93.84

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
        MDVKTAFLNGDLEEEIY+EQPEGFIVH+QESK+CKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV

Query:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRYD-DCTRQDIA
         NDVKSML+VNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEK LKKYNYFDSKPTCTPYDSS+KLFKNTGDSVNQTEYASIIGSLRY  D TR  IA
Subjt:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRYD-DCTRQDIA

Query:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA
        Y VGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFP VLEGYSDADWNSL DD KATSGYIFNI GGAVA
Subjt:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA

TYK06419.1 hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa]

2.0e-141

89.86

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
        MDVKTAFLNGDLEEEIY+EQ EGFIVH QESK+CKLDKSLYGLKQAPKQWHEKFDNLL+SKGFKVNESDKCIYYKTEGRLCIIICLYVDD+LIFGSNL+V
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV

Query:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA
         NDVKSML+ NFDMK+L EADVILGIKITRT+NGI LDQSHYIEKILKKYNYFDSKPTCTPYDSS+KLF+NTGDSVNQ+EYASIIGSLRY  DCTR DIA
Subjt:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA

Query:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA
        Y VGLLCRFTSRPSLEHWN IER++RYLKKTQNLGLHYNKFPAVLEGY DADWNSLSD+ KATSGYIFNI GGAVA
Subjt:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SNZ1 Reverse transcriptase Ty1/copia-type domain-containing protein

5.6e-142

91.3

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
        MDVKT FLNGDL EEIY+EQPEGFIVHDQESK+CKLDKSLY LKQAPKQ HEKFDNLLMSKGFKVNESDKCIYYK EGRLCIIICLYVDDMLIFGSNLHV
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV

Query:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA
         NDVKSMLNVNFDMKDLGEADVILGIKITR ENGI LDQSHYIEKILKKYNYFDSKP CTPYDSS+KLFKNTGDSVNQ+EYASIIGSLRY  DCTR DIA
Subjt:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA

Query:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA
        Y VGLLCRFTSRPSLEHWNAIERVMRYLKK QNLGLHYNKFPAVLEGY+DADWNS SDD KATSGYIFNI G  VA
Subjt:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA

A0A5A7T0X0 Retrotransposon protein, putative, Ty1-copia subclass

2.7e-136

86.96

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
        MDVKT FLNGDLEEEIY+EQPEGFIV  QESK+CKLDKSLYGLKQAPK+WH+KFDNLLMSKGFKVNES+KCIYYKT+GRLCIIICLYVDDMLIFGSNLH+
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV

Query:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA
         NDVKSML+ NFDMKDLGEADVIL IKITRTENGIFLDQSHYIEKILKKYNYFDSK   TPYDSS+KLFKNT DSVNQ+EYASIIGS+RY  DCT+ DIA
Subjt:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA

Query:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA
        Y VGLL RFTSRPSLEHWNAI RVMRYL+KTQ+LGLHYNKFP V EGY+DADWNSLSD+ KATSGYIFNI GGAVA
Subjt:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA

A0A5D3C7T6 Reverse transcriptase Ty1/copia-type domain-containing protein

9.6e-142

89.86

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
        MDVKTAFLNGDLEEEIY+EQ EGFIVH QESK+CKLDKSLYGLKQAPKQWHEKFDNLL+SKGFKVNESDKCIYYKTEGRLCIIICLYVDD+LIFGSNL+V
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV

Query:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA
         NDVKSML+ NFDMK+L EADVILGIKITRT+NGI LDQSHYIEKILKKYNYFDSKPTCTPYDSS+KLF+NTGDSVNQ+EYASIIGSLRY  DCTR DIA
Subjt:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA

Query:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA
        Y VGLLCRFTSRPSLEHWN IER++RYLKKTQNLGLHYNKFPAVLEGY DADWNSLSD+ KATSGYIFNI GGAVA
Subjt:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA

A0A5D3D4T4 Reverse transcriptase Ty1/copia-type domain-containing protein

2.6e-147

93.84

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
        MDVKTAFLNGDLEEEIY+EQPEGFIVH+QESK+CKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV

Query:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRYD-DCTRQDIA
         NDVKSML+VNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEK LKKYNYFDSKPTCTPYDSS+KLFKNTGDSVNQTEYASIIGSLRY  D TR  IA
Subjt:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRYD-DCTRQDIA

Query:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA
        Y VGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFP VLEGYSDADWNSL DD KATSGYIFNI GGAVA
Subjt:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA

A0A5D3DJH9 Putative polyprotein

7.9e-136

86.59

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
        MDVKT FLNGDLEEEIY+EQPE FIVH QE K+CKLDKSLYGL+QAPKQ HEKFD LLMSKGFKVNESDKC+YYKT+GRLCIIICLYVDDML F SNLHV
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV

Query:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA
         NDVKSML+VNFDMKDLGEAD+ILGIKITRT+NGI LDQS+YIEKILKKYNYFDSKP CTPYDSS+KLFKNTGD+VNQ+EY SIIGSLRY  DCTR DIA
Subjt:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRY-DDCTRQDIA

Query:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA
        Y VGLLCRFTSRP LEHWNAIER+MRYLKKTQNLGLHYNKF  VLEGY+D DWNSLSDD KATSGYIFNI GG VA
Subjt:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

7.3e-46

38.91

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRL--CIIICLYVDDMLIFGSNL
        MDVKTAFLNG L+EEIY+  P+G  +      +CKL+K++YGLKQA + W E F+  L    F  +  D+CIY   +G +   I + LYVDD++I   ++
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRL--CIIICLYVDDMLIFGSNL

Query:  HVTNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRYDD-CTRQD
           N+ K  L   F M DL E    +GI+I   E+ I+L QS Y++KIL K+N  +     TP  S +       D    T   S+IG L Y   CTR D
Subjt:  HVTNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRYDD-CTRQD

Query:  IAYVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNK---FPAVLEGYSDADWNSLSDDLKATSGYIFNI
        +   V +L R++S+ + E W  ++RV+RYLK T ++ L + K   F   + GY D+DW     D K+T+GY+F +
Subjt:  IAYVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNK---FPAVLEGYSDADWNSLSDDLKATSGYIFNI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.0e-63

44.95

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYK--TEGRLCIIICLYVDDMLIFGSNL
        +DVKTAFL+GDLEEEIY+EQPEGF V  ++  +CKL+KSLYGLKQAP+QW+ KFD+ + S+ +    SD C+Y+K  +E    II+ LYVDDMLI G + 
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYK--TEGRLCIIICLYVDDMLIFGSNL

Query:  HVTNDVKSMLNVNFDMKDLGEADVILGIKIT--RTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFK-------NTGDSVNQTEYASIIGSLR
         +   +K  L+ +FDMKDLG A  ILG+KI   RT   ++L Q  YIE++L+++N  ++KP  TP    +KL K           ++ +  Y+S +GSL 
Subjt:  HVTNDVKSMLNVNFDMKDLGEADVILGIKIT--RTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFK-------NTGDSVNQTEYASIIGSLR

Query:  YD-DCTRQDIAYVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA
        Y   CTR DIA+ VG++ RF   P  EHW A++ ++RYL+ T    L +     +L+GY+DAD     D+ K+++GY+F   GGA++
Subjt:  YD-DCTRQDIAYVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA

P25600 Putative transposon Ty5-1 protein YCL074W

2.5e-38

36.33

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
        MDV TAFLN  ++E IY++QP GF+       + +L   +YGLKQAP  W+E  +N L   GF  +E +  +Y+++     I I +YVDD+L+   +  +
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV

Query:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENG-IFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQ-TEYASIIGSLRYDDCT-RQD
         + VK  L   + MKDLG+ D  LG+ I ++ NG I L    YI K   +      K T TP  +S  LF+ T   +   T Y SI+G L +   T R D
Subjt:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENG-IFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQ-TEYASIIGSLRYDDCT-RQD

Query:  IAYVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNK-FPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAV
        I+Y V LL RF   P   H  +  RV+RYL  T+++ L Y       L  Y DA   ++ D   +T GY+  + G  V
Subjt:  IAYVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNK-FPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

2.4e-49

39.55

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
        +DV  AFL G L +++Y+ QP GFI  D+ + +CKL K+LYGLKQAP+ W+ +  N L++ GF  + SD  ++    G+  + + +YVDD+LI G++  +
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV

Query:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSV-NQTEYASIIGSLRYDDCTRQDIA
         ++    L+  F +KD  E    LGI+  R   G+ L Q  YI  +L + N   +KP  TP   S KL   +G  + + TEY  I+GSL+Y   TR DI+
Subjt:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSV-NQTEYASIIGSLRYDDCTRQDIA

Query:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAV-LEGYSDADWNSLSDDLKATSGYI
        Y V  L +F   P+ EH  A++R++RYL  T N G+   K   + L  YSDADW    DD  +T+GYI
Subjt:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAV-LEGYSDADWNSLSDDLKATSGYI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.2e-48

37.69

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
        +DV  AFL G L +E+Y+ QP GF+  D+   +C+L K++YGLKQAP+ W+ +    L++ GF  + SD  ++    GR  I + +YVDD+LI G++  +
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV

Query:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSV-NQTEYASIIGSLRYDDCTRQDIA
               L+  F +K+  +    LGI+  R   G+ L Q  Y   +L + N   +KP  TP  +S KL  ++G  + + TEY  I+GSL+Y   TR D++
Subjt:  TNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSV-NQTEYASIIGSLRYDDCTRQDIA

Query:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAV-LEGYSDADWNSLSDDLKATSGYI
        Y V  L ++   P+ +HWNA++RV+RYL  T + G+   K   + L  YSDADW   +DD  +T+GYI
Subjt:  YVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAV-LEGYSDADWNSLSDDLKATSGYI

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

3.1e-44

35.79

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Query:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQES----KICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGS
        +D+  AFLNGDL+EEIY++ P G+     +S     +C L KS+YGLKQA +QW  KF   L+  GF  + SD   + K    L + + +YVDD++I  +
Subjt:  MDVKTAFLNGDLEEEIYIEQPEGFIVHDQES----KICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGS

Query:  NLHVTNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNT-GDSVNQTEYASIIGSLRYDDCTR
        N    +++KS L   F ++DLG     LG++I R+  GI + Q  Y   +L +      KP+  P D S+    ++ GD V+   Y  +IG L Y   TR
Subjt:  NLHVTNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNT-GDSVNQTEYASIIGSLRYDDCTR

Query:  QDIAYVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAV-LEGYSDADWNSLSDDLKATSGY
         DI++ V  L +F+  P L H  A+ +++ Y+K T   GL Y+    + L+ +SDA + S  D  ++T+GY
Subjt:  QDIAYVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAV-LEGYSDADWNSLSDDLKATSGY

ATMG00810.1 DNA/RNA polymerases superfamily protein

1.0e-26

33.88

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Query:  ICLYVDDMLIFGSNLHVTNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYAS
        + LYVDD+L+ GS+  + N +   L+  F MKDLG     LGI+I    +G+FL Q+ Y E+IL      D KP  TP    +    +T    + +++ S
Subjt:  ICLYVDDMLIFGSNLHVTNDVKSMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYAS

Query:  IIGSLRYDDCTRQDIAYVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAV-LEGYSDADWNSLSDDLKATSGY
        I+G+L+Y   TR DI+Y V ++C+    P+L  ++ ++RV+RY+K T   GL+ +K   + ++ + D+DW   +   ++T+G+
Subjt:  IIGSLRYDDCTRQDIAYVVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAV-LEGYSDADWNSLSDDLKATSGY

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATGTTAAAACAGCTTTCCTAAATGGTGATTTAGAAGAAGAGATTTACATAGAACAACCTGAAGGTTTCATAGTTCACGACCAAGAATCCAAAATTTGCAAA
CTAGATAAATCCCTCTATGGTCTAAAACAAGCTCCCAAGCAGTGGCACGAAAAGTTTGACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACAAA
TGTATCTACTATAAGACTGAAGGTAGGCTATGTATTATCATATGCCTATATGTAGATGACATGTTAATCTTTGGATCAAACTTGCACGTCACAAATGATGTAAAA
TCTATGTTGAATGTAAATTTTGACATGAAAGACCTAGGTGAAGCTGATGTAATCTTAGGCATCAAAATTACAAGAACTGAAAATGGAATTTTCTTAGATCAGTCT
CATTACATAGAAAAGATTCTAAAGAAGTACAACTACTTCGATAGTAAACCGACGTGTACACCTTATGACTCTAGTATGAAATTATTCAAAAATACTGGCGACAGT
GTTAACCAAACCGAGTACGCTAGTATCATAGGTAGTTTGAGGTATGATGATTGCACTAGACAAGACATAGCTTACGTCGTAGGATTACTATGTAGGTTTACCAGC
AGACCCAGTCTAGAACATTGGAATGCGATAGAGAGAGTAATGAGATACCTTAAGAAAACCCAAAACCTAGGATTACATTATAACAAGTTTCCCGCTGTACTTGAA
GGTTACAGCGATGCTGATTGGAACTCCCTCTCAGATGACTTAAAGGCTACAAGTGGCTATATTTTTAATATAGTAGGAGGAGCTGTGGCTTAG

mRNA sequence

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Protein sequence

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MDVKTAFLNGDLEEEIYIEQPEGFIVHDQESKICKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVTNDVK
SMLNVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPTCTPYDSSMKLFKNTGDSVNQTEYASIIGSLRYDDCTRQDIAYVVGLLCRFTS
RPSLEHWNAIERVMRYLKKTQNLGLHYNKFPAVLEGYSDADWNSLSDDLKATSGYIFNIVGGAVA

Cmc04g0108641 (gene) of Melon (Charmono) v1.1 genome