CuGenDBv2

Gene ID	Cmc04g0108651
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr04:28174418..28175134
RNA-Seq Expression	Cmc04g0108651
Synteny	Cmc04g0108651
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0018108 - peptidyl-tyrosine phosphorylation (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004674 - protein serine/threonine kinase activity (molecular function) GO:0004714 - transmembrane receptor protein tyrosine kinase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034938.1 putative Polyprotein [Cucumis melo var. makuwa]

1.8e-114

88.36

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Query:  MNGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIE
        MNGKEERKNRTLT+L VAILLE  AAPSWWGEIIKTVNY LNRIPKSNSKTSPY+VLKHK PNL+YL TW CLAYVRIPNP+RRKLAS+AYECVFIGY E
Subjt:  MNGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIE

Query:  NSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTSGGSSSNSLPSIRIQTQDKKVDPEPRRSKRARTVKNFGEDFKMYNVEDPKDLTKALSS
        NSKAYRFYDLE KVII+SNDVDFFED+FPFKSRN+GGLYSQTSGGSS +SLPSIRIQTQDK+VDPEPRRSKRARTVK+F EDF+MYNVEDPKDLTKALSS
Subjt:  NSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTSGGSSSNSLPSIRIQTQDKKVDPEPRRSKRARTVKNFGEDFKMYNVEDPKDLTKALSS

Query:  VDANIWQEAINDEMDSLESNRTWHLVDLPPGC
        VDAN+WQEAIND +DSLESNRTWHLVDLPP C
Subjt:  VDANIWQEAINDEMDSLESNRTWHLVDLPPGC

PNX87224.1 retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Trifolium pratense]

1.2e-65

56.49

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Query:  MNGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIE
        MNGK ERKNRTLT+LVVAI+L+ GAAP  WGEII TV + LNR+PK+    SPY++LK + PNL+YL TW CLAYVR P+PKR KLASRAYECVFIGY  
Subjt:  MNGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIE

Query:  NSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTSGGSSSNSLPSIRIQTQDKKVDPEPRRSKRARTVKNFGEDFKMYNV-EDPKDLTKALS
        NSKAYR                                    SGG+ S+ +  IR    + + + E RRSKR R  K++G D+  Y + EDP +L +ALS
Subjt:  NSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTSGGSSSNSLPSIRIQTQDKKVDPEPRRSKRARTVKNFGEDFKMYNV-EDPKDLTKALS

Query:  SVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK
        S+DA++WQEAINDEMDSLESNRTWHLVDLPPGCK IGCK
Subjt:  SVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK

RZB52467.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]

3.1e-66

67.01

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Query:  IPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIENSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTS
        IPKS SKTSPY++LK + PNL+YL TW CL YVRIP+PKR KLASRAYECVFIGY  NSKAYRFYDL  KVIIKSND DF+E++FPFK RN        S
Subjt:  IPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIENSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTS

Query:  GGSSSNSLPSIRIQT-QDKKVDPEPRRSKRARTVKNFGEDFKMYNV-EDPKDLTKALSSVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK
        GG+SSN LP+I  +     K D EP+R KRAR  K++G D+  Y + EDP  L +ALSS+DA+ WQEAINDEMDSLESN+TWHLV LPPGCK IGCK
Subjt:  GGSSSNSLPSIRIQT-QDKKVDPEPRRSKRARTVKNFGEDFKMYNV-EDPKDLTKALSSVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK

RZB91890.1 putative receptor-like protein kinase [Glycine soja]

3.1e-66

66.5

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Query:  IPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIENSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTS
        IPKS SKTSPY++LK + PNL+YL TW CLAYVRIP+PKR KLASRAYECVFIGY  NSKAYRFYDL  KVII+SND DF+E++FPFK R+        S
Subjt:  IPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIENSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTS

Query:  GGSSSNSLPSIRIQT-QDKKVDPEPRRSKRARTVKNFGEDFKMYNVED-PKDLTKALSSVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK
        GG+SSN LP+I  +     + D EPRR KRAR  K++G D+  Y +E+ P +L +ALSS+DA++WQEAINDEMDSLESN+TWHLVDLPPGCK IGCK
Subjt:  GGSSSNSLPSIRIQT-QDKKVDPEPRRSKRARTVKNFGEDFKMYNVED-PKDLTKALSSVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK

RZC09450.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]

1.1e-82

66.25

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Query:  MNGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIE
        MNGK ERKNRT T+LVVA +L   A   WWGEI+ TV Y LNRIPKS SKTSPY++LK + PNL+YL TW CLAYVRIP+PKR KLASRAYECVFIGY  
Subjt:  MNGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIE

Query:  NSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTSGGSSSNSLPSIRIQT-QDKKVDPEPRRSKRARTVKNFGEDFKMYNV-EDPKDLTKAL
        NSKAYRFYDL  KVII+SND DF+E++FPFK R+        SGG+SSN LP+I  +     K D EPRR KRAR  K++G D+  Y + EDP +L +AL
Subjt:  NSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTSGGSSSNSLPSIRIQT-QDKKVDPEPRRSKRARTVKNFGEDFKMYNV-EDPKDLTKAL

Query:  SSVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK
        S +DA++WQEAINDEMDSLES++TWHLVDLPPGCK IGCK
Subjt:  SSVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK

TrEMBL top hits

e value

%identity

Alignment

A0A2K3M8V5 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)

5.7e-66

56.49

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Query:  MNGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIE
        MNGK ERKNRTLT+LVVAI+L+ GAAP  WGEII TV + LNR+PK+    SPY++LK + PNL+YL TW CLAYVR P+PKR KLASRAYECVFIGY  
Subjt:  MNGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIE

Query:  NSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTSGGSSSNSLPSIRIQTQDKKVDPEPRRSKRARTVKNFGEDFKMYNV-EDPKDLTKALS
        NSKAYR                                    SGG+ S+ +  IR    + + + E RRSKR R  K++G D+  Y + EDP +L +ALS
Subjt:  NSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTSGGSSSNSLPSIRIQTQDKKVDPEPRRSKRARTVKNFGEDFKMYNV-EDPKDLTKALS

Query:  SVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK
        S+DA++WQEAINDEMDSLESNRTWHLVDLPPGCK IGCK
Subjt:  SVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK

A0A445FU80 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.5e-66

67.01

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Query:  IPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIENSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTS
        IPKS SKTSPY++LK + PNL+YL TW CL YVRIP+PKR KLASRAYECVFIGY  NSKAYRFYDL  KVIIKSND DF+E++FPFK RN        S
Subjt:  IPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIENSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTS

Query:  GGSSSNSLPSIRIQT-QDKKVDPEPRRSKRARTVKNFGEDFKMYNV-EDPKDLTKALSSVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK
        GG+SSN LP+I  +     K D EP+R KRAR  K++G D+  Y + EDP  L +ALSS+DA+ WQEAINDEMDSLESN+TWHLV LPPGCK IGCK
Subjt:  GGSSSNSLPSIRIQT-QDKKVDPEPRRSKRARTVKNFGEDFKMYNV-EDPKDLTKALSSVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK

A0A445J0J0 Putative receptor-like protein kinase

1.5e-66

66.5

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Query:  IPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIENSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTS
        IPKS SKTSPY++LK + PNL+YL TW CLAYVRIP+PKR KLASRAYECVFIGY  NSKAYRFYDL  KVII+SND DF+E++FPFK R+        S
Subjt:  IPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIENSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTS

Query:  GGSSSNSLPSIRIQT-QDKKVDPEPRRSKRARTVKNFGEDFKMYNVED-PKDLTKALSSVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK
        GG+SSN LP+I  +     + D EPRR KRAR  K++G D+  Y +E+ P +L +ALSS+DA++WQEAINDEMDSLESN+TWHLVDLPPGCK IGCK
Subjt:  GGSSSNSLPSIRIQT-QDKKVDPEPRRSKRARTVKNFGEDFKMYNVED-PKDLTKALSSVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK

A0A445KFK2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.1e-83

66.25

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Query:  MNGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIE
        MNGK ERKNRT T+LVVA +L   A   WWGEI+ TV Y LNRIPKS SKTSPY++LK + PNL+YL TW CLAYVRIP+PKR KLASRAYECVFIGY  
Subjt:  MNGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIE

Query:  NSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTSGGSSSNSLPSIRIQT-QDKKVDPEPRRSKRARTVKNFGEDFKMYNV-EDPKDLTKAL
        NSKAYRFYDL  KVII+SND DF+E++FPFK R+        SGG+SSN LP+I  +     K D EPRR KRAR  K++G D+  Y + EDP +L +AL
Subjt:  NSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTSGGSSSNSLPSIRIQT-QDKKVDPEPRRSKRARTVKNFGEDFKMYNV-EDPKDLTKAL

Query:  SSVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK
        S +DA++WQEAINDEMDSLES++TWHLVDLPPGCK IGCK
Subjt:  SSVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK

A0A5D3DCJ1 Putative Polyprotein

8.7e-115

88.36

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Query:  MNGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIE
        MNGKEERKNRTLT+L VAILLE  AAPSWWGEIIKTVNY LNRIPKSNSKTSPY+VLKHK PNL+YL TW CLAYVRIPNP+RRKLAS+AYECVFIGY E
Subjt:  MNGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIE

Query:  NSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTSGGSSSNSLPSIRIQTQDKKVDPEPRRSKRARTVKNFGEDFKMYNVEDPKDLTKALSS
        NSKAYRFYDLE KVII+SNDVDFFED+FPFKSRN+GGLYSQTSGGSS +SLPSIRIQTQDK+VDPEPRRSKRARTVK+F EDF+MYNVEDPKDLTKALSS
Subjt:  NSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTSGGSSSNSLPSIRIQTQDKKVDPEPRRSKRARTVKNFGEDFKMYNVEDPKDLTKALSS

Query:  VDANIWQEAINDEMDSLESNRTWHLVDLPPGC
        VDAN+WQEAIND +DSLESNRTWHLVDLPP C
Subjt:  VDANIWQEAINDEMDSLESNRTWHLVDLPPGC

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.5e-10

25.44

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Query:  MNGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPKS---NSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIG
        +NG  ER  RT+T+    ++       S+WGE + T  Y +NRIP     +S  +PY++  +K P L +L  +    YV I N K+ K   ++++ +F+G
Subjt:  MNGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPKS---NSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIG

Query:  YIENSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTSGGSSSNSLPSIRIQTQDKKV--DPEPRRSKRARTVKNFGEDFKMYNVEDPKDLT
        Y  N   ++ +D   +  I + DV   E        N+  +  +T     S    +       +K+     P  SK    ++   +  +  N   P D  
Subjt:  YIENSKAYRFYDLEKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTSGGSSSNSLPSIRIQTQDKKV--DPEPRRSKRARTVKNFGEDFKMYNVEDPKDLT

Query:  KALSSVDANIWQEAINDEM--DSLESNR
        K + +   N  +E  N +   DS ESN+
Subjt:  KALSSVDANIWQEAINDEM--DSLESNR

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.3e-22

28.52

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Query:  NGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPK-SNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIE
        NG  ER NRT+ + V ++L       S+WGE ++T  Y +NR P    +   P +V  +K  + ++L  + C A+  +P  +R KL  ++  C+FIGY +
Subjt:  NGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPK-SNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIE

Query:  NSKAYRFYDLEKKVIIKSNDVDFFEDR---------------------FPFKSRNNGGLYSQTSGGSSSNSLPSIRIQ---------------TQDKKVD
            YR +D  KK +I+S DV F E                        P  S N     S T   S     P   I+               TQ ++  
Subjt:  NSKAYRFYDLEKKVIIKSNDVDFFEDR---------------------FPFKSRNNGGLYSQTSGGSSSNSLPSIRIQ---------------TQDKKVD

Query:  PEPRRSKRARTVKNFGEDFKMYNVED---PKDLTKALSSVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK
           RRS+R R         +   + D   P+ L + LS  + N   +A+ +EM+SL+ N T+ LV+LP G + + CK
Subjt:  PEPRRSKRARTVKNFGEDFKMYNVED---PKDLTKALSSVDANIWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

6.1e-04

44.12

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Query:  IWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK
        +W  A++DE+ ++E+  TW +  LPP  K IGCK
Subjt:  IWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATGGAAAAGAAGAAAGAAAGAATAGAACTCTAACTAAGTTAGTAGTTGCTATCTTACTTGAGTTAGGAGCAGCACCATCTTGGTGGGGTGAAATAATTAAGACTGT
TAATTATGCTCTTAATAGGATTCCTAAATCTAACAGTAAAACTTCACCATACAAAGTCCTTAAACATAAAACACCAAACTTGACTTATCTTATAACTTGGGACTGTCTAG
CTTATGTTAGAATACCTAATCCAAAAAGAAGAAAATTAGCAAGTAGAGCCTATGAATGTGTCTTCATAGGATACATTGAAAATAGTAAAGCCTATAGATTCTATGACTTA
GAAAAAAAAGTAATTATAAAATCGAATGACGTAGATTTTTTCGAGGACAGATTTCCTTTTAAATCTAGAAATAATGGGGGCCTATATAGTCAAACTAGTGGGGGCTCAAG
TTCCAATAGTCTACCTTCAATTAGGATCCAAACCCAAGACAAGAAAGTAGATCCTGAACCTAGAAGAAGCAAGAGAGCTAGAACAGTAAAAAACTTTGGAGAAGACTTCA
AAATGTACAACGTAGAAGATCCAAAAGATCTAACAAAAGCATTATCATCAGTAGATGCCAATATATGGCAAGAAGCTATCAATGATGAAATGGACTCTCTTGAATCCAAT
AGAACTTGGCACCTAGTTGACTTACCCCCTGGATGTAAAGCTATAGGCTGCAAATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MNGKEERKNRTLTKLVVAILLELGAAPSWWGEIIKTVNYALNRIPKSNSKTSPYKVLKHKTPNLTYLITWDCLAYVRIPNPKRRKLASRAYECVFIGYIENSKAYRFYDL
EKKVIIKSNDVDFFEDRFPFKSRNNGGLYSQTSGGSSSNSLPSIRIQTQDKKVDPEPRRSKRARTVKNFGEDFKMYNVEDPKDLTKALSSVDANIWQEAINDEMDSLESN
RTWHLVDLPPGCKAIGCK

Cmc04g0108651 (gene) of Melon (Charmono) v1.1 genome