; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0108821 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0108821
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr04:28376083..28377690
RNA-Seq ExpressionCmc04g0108821
SyntenyCmc04g0108821
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061922.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]3.2e-24487.19Show/hide
Query:  VFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVE
        V    EK PPRREIEHQIHLK+GTDPINVRPYRY FHQK EMEKLV+EMLM GVIRPSKSPFSSP+LLVKKKD SWRFCVDYRA+NNVTIPDKFPIPIVE
Subjt:  VFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVE

Query:  ELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVL
        ELFDELNGASLFSKIDLK GYHQIRMVEKDIPK AFRTHEGHYEFLVMPFGLTNAPATFQ LMN VFKPYLRKFVLVFFDDILVYSKNE+DHVVHLGKVL
Subjt:  ELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVL

Query:  SSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFE
        SSLREHSL+ANKKK SFAQLKVEYL HII G GVEVDP+KIRSIADWPTPTNVRETRGFLGL  YYRRFVKHYGSI APLTQLLKKGGF WNKEA+EAFE
Subjt:  SSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFE

Query:  QLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRT
        QLK AMISLP+LALPNFE+PFEIETDASGV +GA+LTQMNKPIAFYSH LAMRDRAKPVYERELMAVVLAVQRW P LLG +FVVKTD+KSLKFLLEQRT
Subjt:  QLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRT

Query:  IQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPTLVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF
        IQPQYQ WV KLLGYSFEV+YK GLENKAADAL RKP+EIMNC M+  TLVDL TIK+EV+KDE+LQK I  EQT T K++IKF
Subjt:  IQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPTLVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF

KAA0062661.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]5.2e-24782.43Show/hide
Query:  MFKTWDNQDEGYLIECRAIEVKRDRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEM
        M KTWD+QDEGYLIECRAIEVK DRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLP RREIEHQIHLK+                           
Subjt:  MFKTWDNQDEGYLIECRAIEVKRDRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEM

Query:  LMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMP
                                       DYRAINNVTIPDKFPIP+VEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPK AFRTHEGHYEFLVMP
Subjt:  LMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMP

Query:  FGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPT
        FGLTNAPATFQ LMNTVFKPYLRKFVLVFFDDILVYSKNEDDH+VHLGKVLSSLREHSL+ANKKKCSFAQLKVEYLGHIISGKGVEVDP+KIRSIA WPT
Subjt:  FGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPT

Query:  PTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHT
         TNVRET+GFLGL GY RRFVKHYGSI APLTQLLKKGGF WNKEAEEAFEQLKGAMISLP+LALPNFEQPFEIETDASGV +GAVLTQMNKPIAFYSHT
Subjt:  PTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHT

Query:  LAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPT
        LAMRDRAKPVYERE MAVVLAVQRW P LLGTK VVKT++KSLKF  EQRTIQPQYQKWVAKLLGYSFEVVYK  LENKAADALSRKPMEIMNCGMS PT
Subjt:  LAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPT

Query:  LVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF
        LVD TTIK+EV+KDEMLQKTITTEQTDTTKKS+KF
Subjt:  LVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF

TYK01195.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]5.2e-24782.43Show/hide
Query:  MFKTWDNQDEGYLIECRAIEVKRDRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEM
        M KTWD+QDEGYLIECRAIEVK DRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLP RREIEHQIHLK+                           
Subjt:  MFKTWDNQDEGYLIECRAIEVKRDRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEM

Query:  LMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMP
                                       DYRAINNVTIPDKFPIP+VEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPK AFRTHEGHYEFLVMP
Subjt:  LMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMP

Query:  FGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPT
        FGLTNAPATFQ LMNTVFKPYLRKFVLVFFDDILVYSKNEDDH+VHLGKVLSSLREHSL+ANKKKCSFAQLKVEYLGHIISGKGVEVDP+KIRSIA WPT
Subjt:  FGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPT

Query:  PTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHT
         TNVRET+GFLGL GY RRFVKHYGSI APLTQLLKKGGF WNKEAEEAFEQLKGAMISLP+LALPNFEQPFEIETDASGV +GAVLTQMNKPIAFYSHT
Subjt:  PTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHT

Query:  LAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPT
        LAMRDRAKPVYERE MAVVLAVQRW P LLGTK VVKT++KSLKF  EQRTIQPQYQKWVAKLLGYSFEVVYK  LENKAADALSRKPMEIMNCGMS PT
Subjt:  LAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPT

Query:  LVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF
        LVD TTIK+EV+KDEMLQKTITTEQTDTTKKS+KF
Subjt:  LVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF

TYK24006.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]3.2e-24487.19Show/hide
Query:  VFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVE
        V    EK PPRREIEHQIHLK+GTDPINVRPYRY FHQK EMEKLV+EMLM GVIRPSKSPFSSP+LLVKKKD SWRFCVDYRA+NNVTIPDKFPIPIVE
Subjt:  VFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVE

Query:  ELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVL
        ELFDELNGASLFSKIDLK GYHQIRMVEKDIPK AFRTHEGHYEFLVMPFGLTNAPATFQ LMN VFKPYLRKFVLVFFDDILVYSKNE+DHVVHLGKVL
Subjt:  ELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVL

Query:  SSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFE
        SSLREHSL+ANKKK SFAQLKVEYL HII G GVEVDP+KIRSIADWPTPTNVRETRGFLGL  YYRRFVKHYGSI APLTQLLKKGGF WNKEA+EAFE
Subjt:  SSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFE

Query:  QLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRT
        QLK AMISLP+LALPNFE+PFEIETDASGV +GA+LTQMNKPIAFYSH LAMRDRAKPVYERELMAVVLAVQRW P LLG +FVVKTD+KSLKFLLEQRT
Subjt:  QLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRT

Query:  IQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPTLVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF
        IQPQYQ WV KLLGYSFEV+YK GLENKAADAL RKP+EIMNC M+  TLVDL TIK+EV+KDE+LQK I  EQT T K++IKF
Subjt:  IQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPTLVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF

TYK27013.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]2.7e-29698.46Show/hide
Query:  AIEVKRDRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPV
        AIEVKRDRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLPPRREIEHQIHLKKGTDPINVR YRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPV
Subjt:  AIEVKRDRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPV

Query:  LLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTV
        LLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKS YHQIRMVEKDIPK AFRTHEGHYEFLVMPFGLTNAPATFQALMNTV
Subjt:  LLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTV

Query:  FKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYY
        FKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPT TNVRETRGFLGLIGYY
Subjt:  FKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYY

Query:  RRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMA
        RRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQLKGAMISLP+LALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMA
Subjt:  RRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMA

Query:  VVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPTLVDLTTIKKEVQKDEML
        VVLAVQRW PNLLGTKFVVKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYK GLENKAADALSRKPMEIMNCGMSAPTLVDLTTIKKEV+KDEML
Subjt:  VVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPTLVDLTTIKKEVQKDEML

Query:  QKTITTEQTDTTKKSIKF
        QKTITTEQTDTTKKSIKF
Subjt:  QKTITTEQTDTTKKSIKF

TrEMBL top hitse value%identityAlignment
A0A5A7V139 Transposon Tf2-9 polyprotein1.5e-24487.19Show/hide
Query:  VFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVE
        V    EK PPRREIEHQIHLK+GTDPINVRPYRY FHQK EMEKLV+EMLM GVIRPSKSPFSSP+LLVKKKD SWRFCVDYRA+NNVTIPDKFPIPIVE
Subjt:  VFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVE

Query:  ELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVL
        ELFDELNGASLFSKIDLK GYHQIRMVEKDIPK AFRTHEGHYEFLVMPFGLTNAPATFQ LMN VFKPYLRKFVLVFFDDILVYSKNE+DHVVHLGKVL
Subjt:  ELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVL

Query:  SSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFE
        SSLREHSL+ANKKK SFAQLKVEYL HII G GVEVDP+KIRSIADWPTPTNVRETRGFLGL  YYRRFVKHYGSI APLTQLLKKGGF WNKEA+EAFE
Subjt:  SSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFE

Query:  QLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRT
        QLK AMISLP+LALPNFE+PFEIETDASGV +GA+LTQMNKPIAFYSH LAMRDRAKPVYERELMAVVLAVQRW P LLG +FVVKTD+KSLKFLLEQRT
Subjt:  QLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRT

Query:  IQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPTLVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF
        IQPQYQ WV KLLGYSFEV+YK GLENKAADAL RKP+EIMNC M+  TLVDL TIK+EV+KDE+LQK I  EQT T K++IKF
Subjt:  IQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPTLVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF

A0A5A7VAG8 Transposon Ty3-I Gag-Pol polyprotein2.5e-24782.43Show/hide
Query:  MFKTWDNQDEGYLIECRAIEVKRDRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEM
        M KTWD+QDEGYLIECRAIEVK DRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLP RREIEHQIHLK+                           
Subjt:  MFKTWDNQDEGYLIECRAIEVKRDRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEM

Query:  LMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMP
                                       DYRAINNVTIPDKFPIP+VEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPK AFRTHEGHYEFLVMP
Subjt:  LMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMP

Query:  FGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPT
        FGLTNAPATFQ LMNTVFKPYLRKFVLVFFDDILVYSKNEDDH+VHLGKVLSSLREHSL+ANKKKCSFAQLKVEYLGHIISGKGVEVDP+KIRSIA WPT
Subjt:  FGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPT

Query:  PTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHT
         TNVRET+GFLGL GY RRFVKHYGSI APLTQLLKKGGF WNKEAEEAFEQLKGAMISLP+LALPNFEQPFEIETDASGV +GAVLTQMNKPIAFYSHT
Subjt:  PTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHT

Query:  LAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPT
        LAMRDRAKPVYERE MAVVLAVQRW P LLGTK VVKT++KSLKF  EQRTIQPQYQKWVAKLLGYSFEVVYK  LENKAADALSRKPMEIMNCGMS PT
Subjt:  LAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPT

Query:  LVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF
        LVD TTIK+EV+KDEMLQKTITTEQTDTTKKS+KF
Subjt:  LVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF

A0A5D3BPU7 Transposon Ty3-I Gag-Pol polyprotein2.5e-24782.43Show/hide
Query:  MFKTWDNQDEGYLIECRAIEVKRDRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEM
        M KTWD+QDEGYLIECRAIEVK DRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLP RREIEHQIHLK+                           
Subjt:  MFKTWDNQDEGYLIECRAIEVKRDRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEM

Query:  LMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMP
                                       DYRAINNVTIPDKFPIP+VEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPK AFRTHEGHYEFLVMP
Subjt:  LMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMP

Query:  FGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPT
        FGLTNAPATFQ LMNTVFKPYLRKFVLVFFDDILVYSKNEDDH+VHLGKVLSSLREHSL+ANKKKCSFAQLKVEYLGHIISGKGVEVDP+KIRSIA WPT
Subjt:  FGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPT

Query:  PTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHT
         TNVRET+GFLGL GY RRFVKHYGSI APLTQLLKKGGF WNKEAEEAFEQLKGAMISLP+LALPNFEQPFEIETDASGV +GAVLTQMNKPIAFYSHT
Subjt:  PTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHT

Query:  LAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPT
        LAMRDRAKPVYERE MAVVLAVQRW P LLGTK VVKT++KSLKF  EQRTIQPQYQKWVAKLLGYSFEVVYK  LENKAADALSRKPMEIMNCGMS PT
Subjt:  LAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPT

Query:  LVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF
        LVD TTIK+EV+KDEMLQKTITTEQTDTTKKS+KF
Subjt:  LVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF

A0A5D3DK67 Transposon Tf2-9 polyprotein1.5e-24487.19Show/hide
Query:  VFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVE
        V    EK PPRREIEHQIHLK+GTDPINVRPYRY FHQK EMEKLV+EMLM GVIRPSKSPFSSP+LLVKKKD SWRFCVDYRA+NNVTIPDKFPIPIVE
Subjt:  VFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVE

Query:  ELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVL
        ELFDELNGASLFSKIDLK GYHQIRMVEKDIPK AFRTHEGHYEFLVMPFGLTNAPATFQ LMN VFKPYLRKFVLVFFDDILVYSKNE+DHVVHLGKVL
Subjt:  ELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVL

Query:  SSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFE
        SSLREHSL+ANKKK SFAQLKVEYL HII G GVEVDP+KIRSIADWPTPTNVRETRGFLGL  YYRRFVKHYGSI APLTQLLKKGGF WNKEA+EAFE
Subjt:  SSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFE

Query:  QLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRT
        QLK AMISLP+LALPNFE+PFEIETDASGV +GA+LTQMNKPIAFYSH LAMRDRAKPVYERELMAVVLAVQRW P LLG +FVVKTD+KSLKFLLEQRT
Subjt:  QLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRT

Query:  IQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPTLVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF
        IQPQYQ WV KLLGYSFEV+YK GLENKAADAL RKP+EIMNC M+  TLVDL TIK+EV+KDE+LQK I  EQT T K++IKF
Subjt:  IQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPTLVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF

A0A5D3DTQ1 Transposon Tf2-9 polyprotein1.3e-29698.46Show/hide
Query:  AIEVKRDRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPV
        AIEVKRDRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLPPRREIEHQIHLKKGTDPINVR YRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPV
Subjt:  AIEVKRDRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPV

Query:  LLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTV
        LLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKS YHQIRMVEKDIPK AFRTHEGHYEFLVMPFGLTNAPATFQALMNTV
Subjt:  LLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTV

Query:  FKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYY
        FKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPT TNVRETRGFLGLIGYY
Subjt:  FKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYY

Query:  RRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMA
        RRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQLKGAMISLP+LALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMA
Subjt:  RRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMA

Query:  VVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPTLVDLTTIKKEVQKDEML
        VVLAVQRW PNLLGTKFVVKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYK GLENKAADALSRKPMEIMNCGMSAPTLVDLTTIKKEV+KDEML
Subjt:  VVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPTLVDLTTIKKEVQKDEML

Query:  QKTITTEQTDTTKKSIKF
        QKTITTEQTDTTKKSIKF
Subjt:  QKTITTEQTDTTKKSIKF

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.1e-8738.32Show/hide
Query:  EKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLV-KKKDGS----WRFCVDYRAINNVTIPDKFPIPIVE
        +KL    + +H I+ K      +   Y  ++ Q  E+E  +++ML  G+IR S SP++SP+ +V KK+D S    +R  +DYR +N +T+ D+ PIP ++
Subjt:  EKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLV-KKKDGS----WRFCVDYRAINNVTIPDKFPIPIVE

Query:  ELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVL
        E+  +L   + F+ IDL  G+HQI M  + + K AF T  GHYE+L MPFGL NAPATFQ  MN + +P L K  LV+ DDI+V+S + D+H+  LG V 
Subjt:  ELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVL

Query:  SSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGG--FAWNKEAEEA
          L + +L     KC F + +  +LGH+++  G++ +P+KI +I  +P PT  +E + FLGL GYYR+F+ ++  I  P+T+ LKK       N E + A
Subjt:  SSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGG--FAWNKEAEEA

Query:  FEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQ
        F++LK  +   PIL +P+F + F + TDAS V +GAVL+Q   P+++ S TL   +      E+EL+A+V A + +   LLG  F + +D + L +L   
Subjt:  FEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQ

Query:  RTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPME
        +    +  +W  KL  + F++ Y  G EN  ADALSR  +E
Subjt:  RTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPME

P20825 Retrovirus-related Pol polyprotein from transposon 2977.7e-9240.14Show/hide
Query:  EKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKD-----GSWRFCVDYRAINNVTIPDKFPIPIVE
        EKL     I+H ++    + PI  + Y  +   + E+E  V+EML  G+IR S SP++SP  +V KK        +R  +DYR +N +TIPD++PIP ++
Subjt:  EKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKD-----GSWRFCVDYRAINNVTIPDKFPIPIVE

Query:  ELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVL
        E+  +L     F+ IDL  G+HQI M E+ I K AF T  GHYE+L MPFGL NAPATFQ  MN + +P L K  LV+ DDI+++S +  +H+  +  V 
Subjt:  ELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVL

Query:  SSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAE--EA
        + L + +L     KC F + +  +LGHI++  G++ +P K+++I  +P PT  +E R FLGL GYYR+F+ +Y  I  P+T  LKK      ++ E  EA
Subjt:  SSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAE--EA

Query:  FEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQ
        FE+LK  +I  PIL LP+FE+ F + TDAS + +GAVL+Q   PI+F S TL   +      E+EL+A+V A + +   LLG +F++ +D + L++L   
Subjt:  FEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFLLEQ

Query:  RTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPME
        +    + ++W  +L  Y F++ Y  G EN  ADALSR  +E
Subjt:  RTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPME

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.9e-8238.41Show/hide
Query:  LPPRR------EIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEE
        LPPR        ++H I +K G     ++PY  +   + E+ K+V+++L    I PSKSP SSPV+LV KKDG++R CVDYR +N  TI D FP+P ++ 
Subjt:  LPPRR------EIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEE

Query:  LFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLS
        L   +  A +F+ +DL SGYHQI M  KD  K AF T  G YE+ VMPFGL NAP+TF   M   F+    +FV V+ DDIL++S++ ++H  HL  VL 
Subjt:  LFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLS

Query:  SLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQ
         L+  +L   KKKC FA  + E+LG+ I  + +     K  +I D+PTP  V++ + FLG+I YYRRF+ +   I  P+ QL       W ++ ++A E+
Subjt:  SLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQ

Query:  LKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKP------IAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFL
        LK A+ + P+L   N +  + + TDAS   IGAVL +++        + ++S +L    +  P  E EL+ ++ A+  +   L G  F ++TD  SL  L
Subjt:  LKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKP------IAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFL

Query:  LEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSR
          +     + Q+W+  L  Y F + Y AG +N  ADA+SR
Subjt:  LEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.2e-8937.34Show/hide
Query:  ESPWATNSIQNVLKG-FDDVFTWP-EKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKK-----DGS
        E P  T  I N L G F  +F  P   +     ++ +I      DPI  + Y Y  + + E+E+ + E+L  G+IRPS SP++SP+ +V KK     +  
Subjt:  ESPWATNSIQNVLKG-FDDVFTWP-EKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKK-----DGS

Query:  WRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFV
        +R  VD++ +N VTIPD +PIP +      L  A  F+ +DL SG+HQI M E DIPK AF T  G YEFL +PFGL NAPA FQ +++ + + ++ K  
Subjt:  WRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFV

Query:  LVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGS
         V+ DDI+V+S++ D H  +L  VL+SL + +L  N +K  F   +VE+LG+I++  G++ DPKK+R+I++ P PT+V+E + FLG+  YYR+F++ Y  
Subjt:  LVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGS

Query:  IPAPLTQLLK------------KGGFAWNKEAEEAFEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQ----MNKPIAFYSHTLAMRDRAKPV
        +  PLT L +            K     ++ A ++F  LK  + S  ILA P F +PF + TDAS   IGAVL+Q     ++PIA+ S +L   +     
Subjt:  IPAPLTQLLK------------KGGFAWNKEAEEAFEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQ----MNKPIAFYSHTLAMRDRAKPV

Query:  YERELMAVVLAVQRWHPNLLGTKFV-VKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEI
         E+E++A++ ++      L G   + V TD + L F L  R    + ++W A++  Y+ E++YK G  N  ADALSR P ++
Subjt:  YERELMAVVLAVQRWHPNLLGTKFV-VKTDKKSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEI

Q99315 Transposon Ty3-G Gag-Pol polyprotein5.5e-8238.18Show/hide
Query:  LPPRR------EIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEE
        LPPR        ++H I +K G     ++PY  +   + E+ K+V+++L    I PSKSP SSPV+LV KKDG++R CVDYR +N  TI D FP+P ++ 
Subjt:  LPPRR------EIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEE

Query:  LFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLS
        L   +  A +F+ +DL SGYHQI M  KD  K AF T  G YE+ VMPFGL NAP+TF   M   F+    +FV V+ DDIL++S++ ++H  HL  VL 
Subjt:  LFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKPYLRKFVLVFFDDILVYSKNEDDHVVHLGKVLS

Query:  SLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQ
         L+  +L   KKKC FA  + E+LG+ I  + +     K  +I D+PTP  V++ + FLG+I YYRRF+ +   I  P+ QL       W ++ ++A ++
Subjt:  SLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWNKEAEEAFEQ

Query:  LKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKP------IAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFL
        LK A+ + P+L   N +  + + TDAS   IGAVL +++        + ++S +L    +  P  E EL+ ++ A+  +   L G  F ++TD  SL  L
Subjt:  LKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKP------IAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDKKSLKFL

Query:  LEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSR
          +     + Q+W+  L  Y F + Y AG +N  ADA+SR
Subjt:  LEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSR

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein3.3e-0553.85Show/hide
Query:  QKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKDGSW
        ++T ++  + EML   +I+PS SP+SSPVLLV+KKDG W
Subjt:  QKTEMEKLVKEMLMLGVIRPSKSPFSSPVLLVKKKDGSW

ATMG00860.1 DNA/RNA polymerases superfamily protein1.5e-3755.04Show/hide
Query:  HLGKVLSSLREHSLHANKKKCSFAQLKVEYLG--HIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWN
        HLG VL    +H  +AN+KKC+F Q ++ YLG  HIISG+GV  DP K+ ++  WP P N  E RGFLGL GYYRRFVK+YG I  PLT+LLKK    W 
Subjt:  HLGKVLSSLREHSLHANKKKCSFAQLKVEYLG--HIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAPLTQLLKKGGFAWN

Query:  KEAEEAFEQLKGAMISLPILALPNFEQPF
        + A  AF+ LKGA+ +LP+LALP+ + PF
Subjt:  KEAEEAFEQLKGAMISLPILALPNFEQPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAAAACTTGGGATAATCAAGATGAAGGGTATTTGATCGAATGTAGAGCCATTGAGGTAAAAAGAGACAGAAAACAACAGATTGTTGAGAAACAAGAATCACCCTG
GGCAACTAACTCAATACAAAACGTACTCAAAGGGTTTGATGATGTGTTTACTTGGCCGGAAAAACTGCCACCAAGGAGGGAAATTGAGCATCAAATTCACCTCAAAAAGG
GTACTGACCCCATTAATGTTAGACCGTACAGATATAGTTTCCACCAAAAGACAGAAATGGAGAAATTAGTGAAAGAAATGCTGATGTTAGGGGTAATCCGCCCAAGTAAA
AGTCCATTCTCCAGCCCGGTATTGCTTGTTAAAAAAAAGGATGGTAGTTGGAGATTTTGTGTAGACTACAGAGCAATCAATAATGTCACAATTCCGGACAAATTTCCAAT
ACCAATTGTGGAAGAACTTTTTGATGAATTGAATGGAGCTAGCTTATTCTCCAAAATAGACCTTAAATCAGGGTATCATCAAATAAGAATGGTGGAGAAGGATATTCCGA
AAATAGCATTTAGAACTCATGAGGGACACTATGAGTTCCTTGTCATGCCGTTTGGGTTGACTAATGCACCAGCCACCTTCCAAGCTTTAATGAATACTGTTTTCAAACCT
TATTTGAGGAAGTTTGTTTTGGTGTTTTTCGATGACATATTAGTCTACAGCAAGAACGAAGATGATCATGTAGTTCATTTGGGGAAAGTCCTTTCTTCCTTAAGGGAACA
TTCATTACATGCCAATAAGAAGAAGTGCAGCTTTGCACAACTGAAGGTTGAGTATCTCGGACATATCATATCAGGAAAAGGAGTTGAGGTAGATCCTAAAAAGATTCGTT
CTATTGCTGATTGGCCAACACCGACGAATGTTAGAGAAACCCGAGGGTTTCTTGGATTAATCGGCTATTATAGGCGCTTTGTTAAACATTATGGTTCTATACCGGCACCA
TTGACCCAGTTGCTCAAGAAAGGAGGTTTTGCATGGAATAAAGAGGCCGAGGAGGCATTTGAACAATTAAAGGGTGCCATGATCTCATTGCCGATATTAGCTCTCCCAAA
CTTTGAACAACCATTTGAAATAGAAACAGATGCTTCGGGAGTTAGAATAGGCGCGGTGTTGACACAGATGAACAAGCCTATTGCATTTTATAGTCATACATTGGCTATGA
GGGATAGGGCAAAACCAGTTTATGAAAGAGAGCTCATGGCTGTAGTGCTTGCAGTCCAACGTTGGCATCCAAATCTCTTGGGAACGAAATTTGTGGTTAAAACTGATAAG
AAATCATTGAAGTTCCTCTTAGAACAGAGAACAATTCAGCCACAATATCAGAAATGGGTAGCTAAGTTGCTCGGATATTCGTTTGAAGTGGTATATAAAGCCGGTTTAGA
AAACAAGGCAGCTGACGCATTGTCAAGGAAACCTATGGAGATAATGAATTGTGGAATGTCGGCCCCTACCCTGGTGGATCTGACTACTATCAAAAAAGAAGTACAAAAGG
ATGAAATGTTACAGAAGACTATTACAACGGAGCAAACCGATACAACTAAGAAGAGTATTAAATTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCAAAACTTGGGATAATCAAGATGAAGGGTATTTGATCGAATGTAGAGCCATTGAGGTAAAAAGAGACAGAAAACAACAGATTGTTGAGAAACAAGAATCACCCTG
GGCAACTAACTCAATACAAAACGTACTCAAAGGGTTTGATGATGTGTTTACTTGGCCGGAAAAACTGCCACCAAGGAGGGAAATTGAGCATCAAATTCACCTCAAAAAGG
GTACTGACCCCATTAATGTTAGACCGTACAGATATAGTTTCCACCAAAAGACAGAAATGGAGAAATTAGTGAAAGAAATGCTGATGTTAGGGGTAATCCGCCCAAGTAAA
AGTCCATTCTCCAGCCCGGTATTGCTTGTTAAAAAAAAGGATGGTAGTTGGAGATTTTGTGTAGACTACAGAGCAATCAATAATGTCACAATTCCGGACAAATTTCCAAT
ACCAATTGTGGAAGAACTTTTTGATGAATTGAATGGAGCTAGCTTATTCTCCAAAATAGACCTTAAATCAGGGTATCATCAAATAAGAATGGTGGAGAAGGATATTCCGA
AAATAGCATTTAGAACTCATGAGGGACACTATGAGTTCCTTGTCATGCCGTTTGGGTTGACTAATGCACCAGCCACCTTCCAAGCTTTAATGAATACTGTTTTCAAACCT
TATTTGAGGAAGTTTGTTTTGGTGTTTTTCGATGACATATTAGTCTACAGCAAGAACGAAGATGATCATGTAGTTCATTTGGGGAAAGTCCTTTCTTCCTTAAGGGAACA
TTCATTACATGCCAATAAGAAGAAGTGCAGCTTTGCACAACTGAAGGTTGAGTATCTCGGACATATCATATCAGGAAAAGGAGTTGAGGTAGATCCTAAAAAGATTCGTT
CTATTGCTGATTGGCCAACACCGACGAATGTTAGAGAAACCCGAGGGTTTCTTGGATTAATCGGCTATTATAGGCGCTTTGTTAAACATTATGGTTCTATACCGGCACCA
TTGACCCAGTTGCTCAAGAAAGGAGGTTTTGCATGGAATAAAGAGGCCGAGGAGGCATTTGAACAATTAAAGGGTGCCATGATCTCATTGCCGATATTAGCTCTCCCAAA
CTTTGAACAACCATTTGAAATAGAAACAGATGCTTCGGGAGTTAGAATAGGCGCGGTGTTGACACAGATGAACAAGCCTATTGCATTTTATAGTCATACATTGGCTATGA
GGGATAGGGCAAAACCAGTTTATGAAAGAGAGCTCATGGCTGTAGTGCTTGCAGTCCAACGTTGGCATCCAAATCTCTTGGGAACGAAATTTGTGGTTAAAACTGATAAG
AAATCATTGAAGTTCCTCTTAGAACAGAGAACAATTCAGCCACAATATCAGAAATGGGTAGCTAAGTTGCTCGGATATTCGTTTGAAGTGGTATATAAAGCCGGTTTAGA
AAACAAGGCAGCTGACGCATTGTCAAGGAAACCTATGGAGATAATGAATTGTGGAATGTCGGCCCCTACCCTGGTGGATCTGACTACTATCAAAAAAGAAGTACAAAAGG
ATGAAATGTTACAGAAGACTATTACAACGGAGCAAACCGATACAACTAAGAAGAGTATTAAATTCTAA
Protein sequenceShow/hide protein sequence
MFKTWDNQDEGYLIECRAIEVKRDRKQQIVEKQESPWATNSIQNVLKGFDDVFTWPEKLPPRREIEHQIHLKKGTDPINVRPYRYSFHQKTEMEKLVKEMLMLGVIRPSK
SPFSSPVLLVKKKDGSWRFCVDYRAINNVTIPDKFPIPIVEELFDELNGASLFSKIDLKSGYHQIRMVEKDIPKIAFRTHEGHYEFLVMPFGLTNAPATFQALMNTVFKP
YLRKFVLVFFDDILVYSKNEDDHVVHLGKVLSSLREHSLHANKKKCSFAQLKVEYLGHIISGKGVEVDPKKIRSIADWPTPTNVRETRGFLGLIGYYRRFVKHYGSIPAP
LTQLLKKGGFAWNKEAEEAFEQLKGAMISLPILALPNFEQPFEIETDASGVRIGAVLTQMNKPIAFYSHTLAMRDRAKPVYERELMAVVLAVQRWHPNLLGTKFVVKTDK
KSLKFLLEQRTIQPQYQKWVAKLLGYSFEVVYKAGLENKAADALSRKPMEIMNCGMSAPTLVDLTTIKKEVQKDEMLQKTITTEQTDTTKKSIKF