CuGenDBv2

Gene ID	Cmc04g0108891
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr04:28450486..28451362
RNA-Seq Expression	Cmc04g0108891
Synteny	Cmc04g0108891
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

1.5e-152

98.16

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT+GQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCW EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPM+GV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0041424.1 pol protein [Cucumis melo var. makuwa]

6.6e-153

97.79

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT+GQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEA+QKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPM+GV+RFERRGKLSPRFVGPFEILER+GPVAYRLALPPSLS VHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0043669.1 pol protein [Cucumis melo var. makuwa]

1.9e-152

97.79

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT+GQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFP SWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWDEVGEQRLMGPELVQSTNEA+QKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPM+GV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0051368.1 pol protein [Cucumis melo var. makuwa]

1.9e-152

97.79

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT+GQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCW EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFE+GDKVFLKVAPM+GV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0066456.1 pol protein [Cucumis melo var. makuwa]

3.0e-153

98.9

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT+GQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCW EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TDB5 Pol protein

3.2e-153

97.79

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT+GQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEA+QKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPM+GV+RFERRGKLSPRFVGPFEILER+GPVAYRLALPPSLS VHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

A0A5A7TR61 Pol protein

9.3e-153

97.79

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT+GQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFP SWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWDEVGEQRLMGPELVQSTNEA+QKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPM+GV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

A0A5A7U7V9 Reverse transcriptase

9.3e-153

97.79

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT+GQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCW EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFE+GDKVFLKVAPM+GV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

A0A5A7VJE2 Reverse transcriptase

1.4e-153

98.9

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT+GQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCW EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

Q84KB0 Pol protein

7.1e-153

98.16

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT+GQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCW EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPM+GV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

7.3e-38

34.42

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQT+GQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVVRF-ERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K    R    F  +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVVRF-ERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT35 Transposon Tf2-2 polyprotein

7.3e-38

34.42

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQT+GQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVVRF-ERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K    R    F  +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVVRF-ERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT36 Transposon Tf2-3 polyprotein

7.3e-38

34.42

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQT+GQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVVRF-ERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K    R    F  +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVVRF-ERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT41 Transposon Tf2-12 polyprotein

7.3e-38

34.42

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQT+GQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVVRF-ERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K    R    F  +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVVRF-ERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

Q9UR07 Transposon Tf2-11 polyprotein

7.3e-38

34.42

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQT+GQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVVRF-ERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K    R    F  +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVVRF-ERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATTTCATTACCGGGCTACCGAGAACTCTGAGGGGATTTACAGTGATCTGGGTTGTGGTGGACAGACTTACTAAATCAGCGCACTTTGTTCCGGGTAAATCC
ACCTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTGCACGGAGTGCCAGTGTCGATTGTTTCTGACAGAGATGCCCGTTTCACTTCC
AAATTTTGGAAGGGTTTGCAGACTGCTATGGGCACGAGATTGGACTTTAGTACGGCTTTCCATCCACAGACTAACGGTCAGACTGAGCGTCTGAACCAGGTTTTA
GAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGC
ATGGCACCGTTTGAGGCCCTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGATGAGGTAGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACT
AACGAAGCGATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGATCTTGAGTTTGAGGTAGGGGAT
AAGGTGTTCTTAAAGGTGGCACCTATGAGAGGTGTCGTGCGTTTTGAAAGGAGGGGAAAGCTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATT
GGCCCTGTAGCTTATCGCTTGGCGTTGCCTCCATCACTCTCGACAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAATTGATGAAAACTTGA

mRNA sequence

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Protein sequence

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MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTNGQTERLNQVL
EDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGD
KVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKLMKT

Cmc04g0108891 (gene) of Melon (Charmono) v1.1 genome