; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0109261 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0109261
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr04:28757223..28757972
RNA-Seq ExpressionCmc04g0109261
SyntenyCmc04g0109261
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR032567 - LDOC1-related
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]2.7e-12992.77Show/hide
Query:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK
        MAIPL SS+NS ETVPK+IM VLEKYRD M DSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL KQLDELLNAGFIRPAKAPYGAPVLFQ+
Subjt:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY
        KKDGSLRLCIDYR LNKLT+RNKYPLPIITDLFDRLHG KYFSKLDLRSGYYQVRIAEGDEPK TCVTRYGAFEFLVMPFGLTNA  TFCTLMNQVFHEY
Subjt:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY

Query:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ
        LDKFVVVYLDDI+V+STTMEEHRDHLQKVFQKLKENQLYVKREKCSF Q
Subjt:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]2.7e-12992.77Show/hide
Query:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK
        MAIPL SS+NS ETVPK+IM VLEKYRD M DSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL KQLDELLNAGFIRPAKAPYGAPVLFQ+
Subjt:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY
        KKDGSLRLCIDYR LNKLT+RNKYPLPIITDLFDRLHG KYFSKLDLRSGYYQVRIAEGDEPK TCVTRYGAFEFLVMPFGLTNA  TFCTLMNQVFHEY
Subjt:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY

Query:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ
        LDKFVVVYLDDI+V+STTMEEHRDHLQKVFQKLKENQLYVKREKCSF Q
Subjt:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]2.7e-12992.77Show/hide
Query:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK
        MAIPL SS+NS ETVPK+IM VLEKYRD M DSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL KQLDELLNAGFIRPAKAPYGAPVLFQ+
Subjt:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY
        KKDGSLRLCIDYR LNKLT+RNKYPLPIITDLFDRLHG KYFSKLDLRSGYYQVRIAEGDEPK TCVTRYGAFEFLVMPFGLTNA  TFCTLMNQVFHEY
Subjt:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY

Query:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ
        LDKFVVVYLDDI+V+STTMEEHRDHLQKVFQKLKENQLYVKREKCSF Q
Subjt:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]2.7e-12992.77Show/hide
Query:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK
        MAIPL SS+NS ETVPK+IM VLEKYRD M DSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL KQLDELLNAGFIRPAKAPYGAPVLFQ+
Subjt:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY
        KKDGSLRLCIDYR LNKLT+RNKYPLPIITDLFDRLHG KYFSKLDLRSGYYQVRIAEGDEPK TCVTRYGAFEFLVMPFGLTNA  TFCTLMNQVFHEY
Subjt:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY

Query:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ
        LDKFVVVYLDDI+V+STTMEEHRDHLQKVFQKLKENQLYVKREKCSF Q
Subjt:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]7.1e-13093.17Show/hide
Query:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK
        MAIPLNSS+NS ETVPK+I+ VLEKYRD M DSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL KQLDELLNAGFIRPAKAPYGAPVLFQK
Subjt:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY
        KKDGSLRLCIDYR LNKLT+RNKYPLPIITDLFDRLHG KYFSKLDLRSGYYQVRIAEGDEPK TCVTRYGAFEFLVMPFGLTNA  TFCTLMNQVFHEY
Subjt:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY

Query:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ
        LDKFVVVYLDDI+V+STTMEEHRDHLQKVFQKLKENQLYVKREKCSF Q
Subjt:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ

TrEMBL top hitse value%identityAlignment
A0A5A7T0E2 Reverse transcriptase1.3e-12992.77Show/hide
Query:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK
        MAIPL SS+NS ETVPK+IM VLEKYRD M DSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL KQLDELLNAGFIRPAKAPYGAPVLFQ+
Subjt:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY
        KKDGSLRLCIDYR LNKLT+RNKYPLPIITDLFDRLHG KYFSKLDLRSGYYQVRIAEGDEPK TCVTRYGAFEFLVMPFGLTNA  TFCTLMNQVFHEY
Subjt:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY

Query:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ
        LDKFVVVYLDDI+V+STTMEEHRDHLQKVFQKLKENQLYVKREKCSF Q
Subjt:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ

A0A5A7UXR6 Reverse transcriptase1.3e-12992.77Show/hide
Query:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK
        MAIPL SS+NS ETVPK+IM VLEKYRD M DSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL KQLDELLNAGFIRPAKAPYGAPVLFQ+
Subjt:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY
        KKDGSLRLCIDYR LNKLT+RNKYPLPIITDLFDRLHG KYFSKLDLRSGYYQVRIAEGDEPK TCVTRYGAFEFLVMPFGLTNA  TFCTLMNQVFHEY
Subjt:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY

Query:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ
        LDKFVVVYLDDI+V+STTMEEHRDHLQKVFQKLKENQLYVKREKCSF Q
Subjt:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ

A0A5D3BRZ6 Reverse transcriptase1.3e-12992.77Show/hide
Query:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK
        MAIPL SS+NS ETVPK+IM VLEKYRD M DSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL KQLDELLNAGFIRPAKAPYGAPVLFQ+
Subjt:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY
        KKDGSLRLCIDYR LNKLT+RNKYPLPIITDLFDRLHG KYFSKLDLRSGYYQVRIAEGDEPK TCVTRYGAFEFLVMPFGLTNA  TFCTLMNQVFHEY
Subjt:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY

Query:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ
        LDKFVVVYLDDI+V+STTMEEHRDHLQKVFQKLKENQLYVKREKCSF Q
Subjt:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ

A0A5D3C4R1 Reverse transcriptase1.3e-12992.77Show/hide
Query:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK
        MAIPL SS+NS ETVPK+IM VLEKYRD M DSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL KQLDELLNAGFIRPAKAPYGAPVLFQ+
Subjt:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY
        KKDGSLRLCIDYR LNKLT+RNKYPLPIITDLFDRLHG KYFSKLDLRSGYYQVRIAEGDEPK TCVTRYGAFEFLVMPFGLTNA  TFCTLMNQVFHEY
Subjt:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY

Query:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ
        LDKFVVVYLDDI+V+STTMEEHRDHLQKVFQKLKENQLYVKREKCSF Q
Subjt:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ

A0A5D3C9P8 Reverse transcriptase3.4e-13093.17Show/hide
Query:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK
        MAIPLNSS+NS ETVPK+I+ VLEKYRD M DSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL KQLDELLNAGFIRPAKAPYGAPVLFQK
Subjt:  MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY
        KKDGSLRLCIDYR LNKLT+RNKYPLPIITDLFDRLHG KYFSKLDLRSGYYQVRIAEGDEPK TCVTRYGAFEFLVMPFGLTNA  TFCTLMNQVFHEY
Subjt:  KKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEY

Query:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ
        LDKFVVVYLDDI+V+STTMEEHRDHLQKVFQKLKENQLYVKREKCSF Q
Subjt:  LDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein6.0e-3934.24Show/hide
Query:  IPLNSSKNSEETVPK--------KIMHVLEKYRDAMSDSLPKSLP-PRRMIDHEIELV-PGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPY
        I ++SSK++   + K        ++  + ++++D  +++  + LP P + ++ E+EL     + P +N Y + P ++  +  ++++ L +G IR +KA  
Subjt:  IPLNSSKNSEETVPK--------KIMHVLEKYRDAMSDSLPKSLP-PRRMIDHEIELV-PGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPY

Query:  GAPVLFQKKKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTL
          PV+F  KK+G+LR+ +DY+ LNK    N YPLP+I  L  ++ G   F+KLDL+S Y+ +R+ +GDE K+      G FE+LVMP+G++ A   F   
Subjt:  GAPVLFQKKKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTL

Query:  MNQVFHEYLDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ
        +N +  E  +  VV Y+DDI++HS +  EH  H++ V QKLK   L + + KC F Q
Subjt:  MNQVFHEYLDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ

P0CT41 Transposon Tf2-12 polyprotein6.0e-3934.24Show/hide
Query:  IPLNSSKNSEETVPK--------KIMHVLEKYRDAMSDSLPKSLP-PRRMIDHEIELV-PGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPY
        I ++SSK++   + K        ++  + ++++D  +++  + LP P + ++ E+EL     + P +N Y + P ++  +  ++++ L +G IR +KA  
Subjt:  IPLNSSKNSEETVPK--------KIMHVLEKYRDAMSDSLPKSLP-PRRMIDHEIELV-PGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPY

Query:  GAPVLFQKKKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTL
          PV+F  KK+G+LR+ +DY+ LNK    N YPLP+I  L  ++ G   F+KLDL+S Y+ +R+ +GDE K+      G FE+LVMP+G++ A   F   
Subjt:  GAPVLFQKKKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTL

Query:  MNQVFHEYLDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ
        +N +  E  +  VV Y+DDI++HS +  EH  H++ V QKLK   L + + KC F Q
Subjt:  MNQVFHEYLDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFTQ

P31843 RNA-directed DNA polymerase homolog5.6e-4567.97Show/hide
Query:  SLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEYLDKF
        SLR+CIDYR L K+TI+NKYP+P + DLFDRL    +F+KLDLRSGY+QVRIA+GDEPK TCVTRYG+FEF VMPFGLTNA  TFC LMN V +EYLD F
Subjt:  SLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEYLDKF

Query:  VVVYLDDIMV---HSTTMEEHRDHLQKV
        VVVYLDD++V   +S ++ EH  HL+ V
Subjt:  VVVYLDDIMV---HSTTMEEHRDHLQKV

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein4.7e-4439.92Show/hide
Query:  NSSKNSEETVPKKIMHVLEKYRDAMSDSLP------KSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQ
        +S+K++  T+P   + + +KYR+ + + LP       ++P    + H+IE+ PGA+ P    Y +      E+ K + +LL+  FI P+K+P  +PV+  
Subjt:  NSSKNSEETVPKKIMHVLEKYRDAMSDSLP------KSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQ

Query:  KKKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHE
         KKDG+ RLC+DYR LNK TI + +PLP I +L  R+   + F+ LDL SGY+Q+ +   D  K   VT  G +E+ VMPFGL NA  TF   M   F +
Subjt:  KKKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHE

Query:  YLDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSF
           +FV VYLDDI++ S + EEH  HL  V ++LK   L VK++KC F
Subjt:  YLDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSF

Q99315 Transposon Ty3-G Gag-Pol polyprotein4.7e-4439.92Show/hide
Query:  NSSKNSEETVPKKIMHVLEKYRDAMSDSLP------KSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQ
        +S+K++  T+P   + + +KYR+ + + LP       ++P    + H+IE+ PGA+ P    Y +      E+ K + +LL+  FI P+K+P  +PV+  
Subjt:  NSSKNSEETVPKKIMHVLEKYRDAMSDSLP------KSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQ

Query:  KKKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHE
         KKDG+ RLC+DYR LNK TI + +PLP I +L  R+   + F+ LDL SGY+Q+ +   D  K   VT  G +E+ VMPFGL NA  TF   M   F +
Subjt:  KKKDGSLRLCIDYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHE

Query:  YLDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSF
           +FV VYLDDI++ S + EEH  HL  V ++LK   L VK++KC F
Subjt:  YLDKFVVVYLDDIMVHSTTMEEHRDHLQKVFQKLKENQLYVKREKCSF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATCCCACTCAATTCGTCAAAGAACTCAGAGGAGACAGTCCCTAAGAAGATTATGCACGTGCTAGAGAAGTACCGTGATGCGATGTCCGATAGTTTGCCCAAGTC
TTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTGGTGCCAGGGGCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCACCTCCGGAGTTAGCTGAACTTTGGA
AACAGTTAGATGAGTTACTGAATGCAGGGTTCATTAGGCCTGCAAAAGCTCCATATGGGGCCCCAGTTCTTTTCCAGAAGAAGAAAGATGGAAGTTTACGATTGTGCATT
GATTATCGTGTCCTGAATAAGCTCACGATTCGCAACAAGTATCCACTTCCCATAATTACTGACTTGTTCGATCGCTTACATGGGGTGAAGTATTTTTCAAAGTTAGACTT
GCGATCGGGATACTACCAAGTGAGAATTGCAGAGGGAGATGAGCCGAAGATAACCTGTGTCACCCGATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACCA
ATGCCTCTGTAACCTTCTGTACGTTGATGAACCAGGTCTTCCACGAATATCTCGATAAATTTGTAGTAGTCTACCTGGATGATATAATGGTCCATAGTACGACCATGGAG
GAACATAGAGACCACCTGCAAAAGGTTTTTCAGAAATTGAAGGAGAATCAACTGTATGTCAAAAGAGAAAAATGTTCTTTTACACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCATCCCACTCAATTCGTCAAAGAACTCAGAGGAGACAGTCCCTAAGAAGATTATGCACGTGCTAGAGAAGTACCGTGATGCGATGTCCGATAGTTTGCCCAAGTC
TTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTGGTGCCAGGGGCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCACCTCCGGAGTTAGCTGAACTTTGGA
AACAGTTAGATGAGTTACTGAATGCAGGGTTCATTAGGCCTGCAAAAGCTCCATATGGGGCCCCAGTTCTTTTCCAGAAGAAGAAAGATGGAAGTTTACGATTGTGCATT
GATTATCGTGTCCTGAATAAGCTCACGATTCGCAACAAGTATCCACTTCCCATAATTACTGACTTGTTCGATCGCTTACATGGGGTGAAGTATTTTTCAAAGTTAGACTT
GCGATCGGGATACTACCAAGTGAGAATTGCAGAGGGAGATGAGCCGAAGATAACCTGTGTCACCCGATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACCA
ATGCCTCTGTAACCTTCTGTACGTTGATGAACCAGGTCTTCCACGAATATCTCGATAAATTTGTAGTAGTCTACCTGGATGATATAATGGTCCATAGTACGACCATGGAG
GAACATAGAGACCACCTGCAAAAGGTTTTTCAGAAATTGAAGGAGAATCAACTGTATGTCAAAAGAGAAAAATGTTCTTTTACACAATAG
Protein sequenceShow/hide protein sequence
MAIPLNSSKNSEETVPKKIMHVLEKYRDAMSDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCI
DYRVLNKLTIRNKYPLPIITDLFDRLHGVKYFSKLDLRSGYYQVRIAEGDEPKITCVTRYGAFEFLVMPFGLTNASVTFCTLMNQVFHEYLDKFVVVYLDDIMVHSTTME
EHRDHLQKVFQKLKENQLYVKREKCSFTQ