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Cmc04g0109311 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0109311
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr04:28815031..28815561
RNA-Seq ExpressionCmc04g0109311
SyntenyCmc04g0109311
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR032567 - LDOC1-related
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041498.1 uncharacterized protein E6C27_scaffold6G00890 [Cucumis melo var. makuwa]1.7e-7388.39Show/hide
Query:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYRFIRPEKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV
        MAIPLNSSENSGET+PK+IM VLEKYRD +PDSLPKSLPP RMIDHEI+LVP AK P KN+YRFIRP KAPYGAPVLFQKKKDGSLRLCIDYR LNKLTV
Subjt:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYRFIRPEKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV

Query:  CNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF
         NKYPLPIIT+LFDRLH AKYFSKLDLRSG YQVRIAEGDEPKTTCVTRYG FEF
Subjt:  CNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF

KAA0057285.1 uncharacterized protein E6C27_scaffold280G001260 [Cucumis melo var. makuwa]2.9e-7381.71Show/hide
Query:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK
        MAIPL SSENSGET+PK+IM VLEKYRD MPDSLPKSLPP RMIDHEIELVP AKSPAKNAYR                    FIRP KAPYGAPVLFQ+
Subjt:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF
        KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDRLHGAKYFSKLDLRSG YQVRIAEGDEPKTTCVTRYG FEF
Subjt:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF

KAA0060480.1 reverse transcriptase [Cucumis melo var. makuwa]9.1e-7581.71Show/hide
Query:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK
        MAIPLNSSENSGET+PK+I+ VLEKYRD MPDSLPKSLPPWRMIDHEIELVP AK PAKNAYR                    FIRP KAPYGAP+LFQK
Subjt:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF
        KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDRLHGAKYFSKLDLRSG YQVRIAEGDEPKTTCVTRYG FEF
Subjt:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF

KAA0066677.1 uncharacterized protein E6C27_scaffold271G00020 [Cucumis melo var. makuwa]5.0e-7381.71Show/hide
Query:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK
        MAIPL SSENSGET+PK+IM VLEKYRD MPDSLPKSLPP RMIDHEIELVP AK PAKNAYR                    FIRP KAPYGAPVLFQK
Subjt:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF
        KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDRLHGAKYFSKLDLRSG YQVRIAEGDEPKTTCVTRYG FEF
Subjt:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-7381.71Show/hide
Query:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK
        MAIPLNSSENSGET+PK+I+ VLEKYRD MPDSLPKSLPP RMIDHEIELVP AK PAKNAYR                    FIRP KAPYGAPVLFQK
Subjt:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF
        KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDRLHGAKYFSKLDLRSG YQVRIAEGDEPKTTCVTRYG FEF
Subjt:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF

TrEMBL top hitse value%identityAlignment
A0A5A7TF05 Uncharacterized protein8.3e-7488.39Show/hide
Query:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYRFIRPEKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV
        MAIPLNSSENSGET+PK+IM VLEKYRD +PDSLPKSLPP RMIDHEI+LVP AK P KN+YRFIRP KAPYGAPVLFQKKKDGSLRLCIDYR LNKLTV
Subjt:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYRFIRPEKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV

Query:  CNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF
         NKYPLPIIT+LFDRLH AKYFSKLDLRSG YQVRIAEGDEPKTTCVTRYG FEF
Subjt:  CNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF

A0A5A7UUR0 Reverse transcriptase domain-containing protein1.4e-7381.71Show/hide
Query:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK
        MAIPL SSENSGET+PK+IM VLEKYRD MPDSLPKSLPP RMIDHEIELVP AKSPAKNAYR                    FIRP KAPYGAPVLFQ+
Subjt:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF
        KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDRLHGAKYFSKLDLRSG YQVRIAEGDEPKTTCVTRYG FEF
Subjt:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF

A0A5A7UZE9 Reverse transcriptase4.4e-7581.71Show/hide
Query:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK
        MAIPLNSSENSGET+PK+I+ VLEKYRD MPDSLPKSLPPWRMIDHEIELVP AK PAKNAYR                    FIRP KAPYGAP+LFQK
Subjt:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF
        KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDRLHGAKYFSKLDLRSG YQVRIAEGDEPKTTCVTRYG FEF
Subjt:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF

A0A5A7VHT2 Reverse transcriptase domain-containing protein2.4e-7381.71Show/hide
Query:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK
        MAIPL SSENSGET+PK+IM VLEKYRD MPDSLPKSLPP RMIDHEIELVP AK PAKNAYR                    FIRP KAPYGAPVLFQK
Subjt:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF
        KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDRLHGAKYFSKLDLRSG YQVRIAEGDEPKTTCVTRYG FEF
Subjt:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF

A0A5D3C9P8 Reverse transcriptase1.4e-7381.71Show/hide
Query:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK
        MAIPLNSSENSGET+PK+I+ VLEKYRD MPDSLPKSLPP RMIDHEIELVP AK PAKNAYR                    FIRP KAPYGAPVLFQK
Subjt:  MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYR--------------------FIRPEKAPYGAPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF
        KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDRLHGAKYFSKLDLRSG YQVRIAEGDEPKTTCVTRYG FEF
Subjt:  KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF

SwissProt top hitse value%identityAlignment
P0CT41 Transposon Tf2-12 polyprotein9.0e-1739.83Show/hide
Query:  LPPWRMIDHEIELVPWAKSPAKNAYRFIRPEKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIA
        LPP +M     E+    KS        IR  KA    PV+F  KK+G+LR+ +DY+ LNK    N YPLP+I  L  ++ G+  F+KLDL+S  + +R+ 
Subjt:  LPPWRMIDHEIELVPWAKSPAKNAYRFIRPEKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIA

Query:  EGDEPKTTCVTRYGVFEF
        +GDE K       GVFE+
Subjt:  EGDEPKTTCVTRYGVFEF

P31843 RNA-directed DNA polymerase homolog1.1e-2574.65Show/hide
Query:  SLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF
        SLR+CIDYRAL K+T+ NKYP+P + DLFDRL  A +F+KLDLRSG +QVRIA+GDEPKTTCVTRYG FEF
Subjt:  SLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEF

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein7.8e-2134.59Show/hide
Query:  EKYRDAMPDSLP------KSLPPWRMIDHEIELVPWAKSPAKNAY--------------------RFIRPEKAPYGAPVLFQKKKDGSLRLCIDYRALNK
        +KYR+ + + LP       ++P    + H+IE+ P A+ P    Y                    +FI P K+P  +PV+   KKDG+ RLC+DYR LNK
Subjt:  EKYRDAMPDSLP------KSLPPWRMIDHEIELVPWAKSPAKNAY--------------------RFIRPEKAPYGAPVLFQKKKDGSLRLCIDYRALNK

Query:  LTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEFS
         T+ + +PLP I +L  R+  A+ F+ LDL SG +Q+ +   D  KT  VT  G +E++
Subjt:  LTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEFS

Q99315 Transposon Ty3-G Gag-Pol polyprotein7.8e-2134.59Show/hide
Query:  EKYRDAMPDSLP------KSLPPWRMIDHEIELVPWAKSPAKNAY--------------------RFIRPEKAPYGAPVLFQKKKDGSLRLCIDYRALNK
        +KYR+ + + LP       ++P    + H+IE+ P A+ P    Y                    +FI P K+P  +PV+   KKDG+ RLC+DYR LNK
Subjt:  EKYRDAMPDSLP------KSLPPWRMIDHEIELVPWAKSPAKNAY--------------------RFIRPEKAPYGAPVLFQKKKDGSLRLCIDYRALNK

Query:  LTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEFS
         T+ + +PLP I +L  R+  A+ F+ LDL SG +Q+ +   D  KT  VT  G +E++
Subjt:  LTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEFS

Q9UR07 Transposon Tf2-11 polyprotein9.0e-1739.83Show/hide
Query:  LPPWRMIDHEIELVPWAKSPAKNAYRFIRPEKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIA
        LPP +M     E+    KS        IR  KA    PV+F  KK+G+LR+ +DY+ LNK    N YPLP+I  L  ++ G+  F+KLDL+S  + +R+ 
Subjt:  LPPWRMIDHEIELVPWAKSPAKNAYRFIRPEKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKYFSKLDLRSGCYQVRIA

Query:  EGDEPKTTCVTRYGVFEF
        +GDE K       GVFE+
Subjt:  EGDEPKTTCVTRYGVFEF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATCCCACTCAATTCGTCAGAGAACTCAGGGGAGACAATCCCTAAGAAGATTATGCACGTGCTAGAGAAGTACCGTGATGCAATGCCCGATAGTTTGCCC
AAGTCTTTGCCACCTTGGAGAATGATTGATCATGAGATCGAGTTGGTGCCATGGGCAAAATCGCCTGCGAAGAATGCTTATCGGTTCATTAGGCCTGAAAAAGCT
CCGTATGGGGCCCCAGTTCTTTTCCAGAAGAAGAAAGATGGGAGTTTACGATTGTGCATTGATTATCGTGCCCTAAATAAGCTCACGGTTTGCAACAAGTATCCA
CTTCCCATAATTACTGACTTGTTCGATCGCTTACATGGGGCGAAGTATTTTTCAAAGTTAGACTTGCGATCGGGATGCTACCAAGTGAGAATTGCAGAGGGAGAT
GAGCCGAAGACAACCTGTGTCACCCGATATGGTGTGTTCGAATTCTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATCCCACTCAATTCGTCAGAGAACTCAGGGGAGACAATCCCTAAGAAGATTATGCACGTGCTAGAGAAGTACCGTGATGCAATGCCCGATAGTTTGCCC
AAGTCTTTGCCACCTTGGAGAATGATTGATCATGAGATCGAGTTGGTGCCATGGGCAAAATCGCCTGCGAAGAATGCTTATCGGTTCATTAGGCCTGAAAAAGCT
CCGTATGGGGCCCCAGTTCTTTTCCAGAAGAAGAAAGATGGGAGTTTACGATTGTGCATTGATTATCGTGCCCTAAATAAGCTCACGGTTTGCAACAAGTATCCA
CTTCCCATAATTACTGACTTGTTCGATCGCTTACATGGGGCGAAGTATTTTTCAAAGTTAGACTTGCGATCGGGATGCTACCAAGTGAGAATTGCAGAGGGAGAT
GAGCCGAAGACAACCTGTGTCACCCGATATGGTGTGTTCGAATTCTCGTAA
Protein sequenceShow/hide protein sequence
MAIPLNSSENSGETIPKKIMHVLEKYRDAMPDSLPKSLPPWRMIDHEIELVPWAKSPAKNAYRFIRPEKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYP
LPIITDLFDRLHGAKYFSKLDLRSGCYQVRIAEGDEPKTTCVTRYGVFEFS