CuGenDBv2

Gene ID	Cmc04g0109371
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Genome location	CMiso1.1chr04:28870188..28870715
RNA-Seq Expression	Cmc04g0109371
Synteny	Cmc04g0109371
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0098869 - cellular oxidant detoxification (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004601 - peroxidase activity (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0043244.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]

4.7e-80

88.1

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Query:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF
        +DYRKLNQAT+S+KF IPVIEELLDEL+GA+VFSKLDLKSGYHQIRMKEEDI+KTAFR HEGHYEFLVMPFGLTN P TFQSLMNQVFKPFLRRCVLVFF
Subjt:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF

Query:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY
        DDILVYS+DI EHEKHLGMVFAVLRDNQLYAN KKCVFAHSRIQYL HQISK GV+AD+DKIRSM+++
Subjt:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY

KAA0051267.1 peroxidase 64 [Cucumis melo var. makuwa]

6.6e-90

94.86

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Query:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF
        +DYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFR HEGHYEFLVMP GLTN PTTFQSLMNQVFKPFLR CVLVFF
Subjt:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF

Query:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISYDHQTCQD
        DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKK VFA+S+IQYLRHQISK+GVKADEDKIRSMISYDHQTCQD
Subjt:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISYDHQTCQD

TYK14624.1 uncharacterized protein E5676_scaffold1275G00160 [Cucumis melo var. makuwa]

2.8e-80

87.5

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Query:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF
        +DYRKLNQAT+SDKF IPVIEELLDEL+GA+VFSKLDLKSGYHQIRMKEEDI+KTAFR HEGHYEFLVMPFGLTN P TFQSLMNQVFKPFLRRCVLVFF
Subjt:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF

Query:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY
        DDILVYS+D+ EHEKHLGM+FAVLRDNQLYAN KKCVFAHSRIQYL HQISK GV+AD+DKIRSM+++
Subjt:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY

TYK28905.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

6.2e-80

87.5

Show/hide

Query:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF
        +DYRKLNQAT+SDKF IP+IEELLDEL+GA+VFSKLDLKSGYHQIRMKEEDI+KTAFR HEGHYEFLVMPFGLTN PTTFQSLMNQVFKPFLRRCVLVFF
Subjt:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF

Query:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY
        DDILVYS+DI EHEKHLGMVF  LRDNQLYAN KKCVFAHS+IQYL HQISK GV+ADEDKIRSM+++
Subjt:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY

TYK29308.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.8e-80

87.5

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Query:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF
        +DYRKLNQAT+SDKF IPVIEELLDEL+GA+VFSKLDLKSGYHQIRMKEEDI+KTAFR HEGHYEFLVMPFGLTN P TFQSLMNQVFKPFLRRCVLVFF
Subjt:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF

Query:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY
        DDILVYS+D+ EHEKHLGM+FAVLRDNQLYAN KKCVFAHSRIQYL HQISK GV+AD+DKIRSM+++
Subjt:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TIU7 Transposon Ty3-G Gag-Pol polyprotein

2.3e-80

88.1

Show/hide

Query:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF
        +DYRKLNQAT+S+KF IPVIEELLDEL+GA+VFSKLDLKSGYHQIRMKEEDI+KTAFR HEGHYEFLVMPFGLTN P TFQSLMNQVFKPFLRRCVLVFF
Subjt:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF

Query:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY
        DDILVYS+DI EHEKHLGMVFAVLRDNQLYAN KKCVFAHSRIQYL HQISK GV+AD+DKIRSM+++
Subjt:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY

A0A5A7UA19 Peroxidase 64

3.2e-90

94.86

Show/hide

Query:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF
        +DYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFR HEGHYEFLVMP GLTN PTTFQSLMNQVFKPFLR CVLVFF
Subjt:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF

Query:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISYDHQTCQD
        DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKK VFA+S+IQYLRHQISK+GVKADEDKIRSMISYDHQTCQD
Subjt:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISYDHQTCQD

A0A5D3CUL0 Reverse transcriptase domain-containing protein

1.3e-80

87.5

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Query:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF
        +DYRKLNQAT+SDKF IPVIEELLDEL+GA+VFSKLDLKSGYHQIRMKEEDI+KTAFR HEGHYEFLVMPFGLTN P TFQSLMNQVFKPFLRRCVLVFF
Subjt:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF

Query:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY
        DDILVYS+D+ EHEKHLGM+FAVLRDNQLYAN KKCVFAHSRIQYL HQISK GV+AD+DKIRSM+++
Subjt:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY

A0A5D3DZZ7 Ty3/gypsy retrotransposon protein

3.0e-80

87.5

Show/hide

Query:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF
        +DYRKLNQAT+SDKF IP+IEELLDEL+GA+VFSKLDLKSGYHQIRMKEEDI+KTAFR HEGHYEFLVMPFGLTN PTTFQSLMNQVFKPFLRRCVLVFF
Subjt:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF

Query:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY
        DDILVYS+DI EHEKHLGMVF  LRDNQLYAN KKCVFAHS+IQYL HQISK GV+ADEDKIRSM+++
Subjt:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY

A0A5D3E0Q7 Transposon Ty3-G Gag-Pol polyprotein

1.3e-80

87.5

Show/hide

Query:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF
        +DYRKLNQAT+SDKF IPVIEELLDEL+GA+VFSKLDLKSGYHQIRMKEEDI+KTAFR HEGHYEFLVMPFGLTN P TFQSLMNQVFKPFLRRCVLVFF
Subjt:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF

Query:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY
        DDILVYS+D+ EHEKHLGM+FAVLRDNQLYAN KKCVFAHSRIQYL HQISK GV+AD+DKIRSM+++
Subjt:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

3.3e-36

42.26

Show/hide

Query:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF
        +DYRKLN+ T+ D+  IP ++E+L +L   + F+ +DL  G+HQI M  E + KTAF    GHYE+L MPFGL N P TFQ  MN + +P L +  LV+ 
Subjt:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF

Query:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY
        DDI+V+S  + EH + LG+VF  L    L     KC F      +L H ++ DG+K + +KI ++  Y
Subjt:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

1.4e-31

36.42

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Query:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF
        +D+RKLN+ TI D++ +P I  +L  L  A  F+ LDLKSGYHQI + E D +KT+F ++ G YEF  +PFGL N  + FQ  ++ V +  + +   V+ 
Subjt:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF

Query:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISYDHQTC
        DD++++S +  +H +H+  V   L D  +  +++K  F    ++YL   +SKDG K+D +K++++  Y    C
Subjt:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISYDHQTC

P20825 Retrovirus-related Pol polyprotein from transposon 297

6.1e-38

42.86

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Query:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF
        +DYRKLN+ TI D++ IP ++E+L +L     F+ +DL  G+HQI M EE I KTAF    GHYE+L MPFGL N P TFQ  MN + +P L +  LV+ 
Subjt:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF

Query:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY
        DDI+++S  + EH   + +VF  L D  L     KC F      +L H ++ DG+K +  K+++++SY
Subjt:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISY

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

2.9e-32

41.21

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Query:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF
        +D+++LN  TI D + IP I   L  L  A  F+ LDL SG+HQI MKE DI KTAF    G YEFL +PFGL N P  FQ +++ + +  + +   V+ 
Subjt:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF

Query:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSM
        DDI+V+S D   H K+L +V A L    L  N +K  F  +++++L + ++ DG+KAD  K+R++
Subjt:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSM

Q99315 Transposon Ty3-G Gag-Pol polyprotein

4.2e-31

47.33

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Query:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF
        +DYR LN+ATISD F +P I+ LL  +  A +F+ LDL SGYHQI M+ +D  KTAF    G YE+ VMPFGL N P+TF   M   F+    R V V+ 
Subjt:  MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFF

Query:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQI
        DDIL++S    EH KHL  V   L++  L   KKKC FA    ++L + I
Subjt:  DDILVYSNDICEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQI

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

6.7e-08

47.27

Show/hide

Query:  HLGMVFAVLRDNQLYANKKKCVFAHSRIQYL--RHQISKDGVKADEDKIRSMISY
        HLGMV  +   +Q YAN+KKC F   +I YL  RH IS +GV AD  K+ +M+ +
Subjt:  HLGMVFAVLRDNQLYANKKKCVFAHSRIQYL--RHQISKDGVKADEDKIRSMISY

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGACTATCGAAAGTTAAATCAAGCCACCATCTCAGACAAGTTTTCCATCCCAGTAATTGAAGAACTATTAGATGAACTACATGGAGCTTCCGTGTTCTCAAAATTAGA
CCTCAAATCGGGCTATCATCAAATCAGAATGAAGGAGGAGGACATCGACAAAACGGCTTTTCGCATACATGAAGGCCACTATGAGTTTCTCGTAATGCCGTTTGGCCTGA
CTAATGTCCCGACAACATTCCAATCCTTAATGAACCAGGTTTTTAAACCATTTCTGAGACGTTGTGTATTAGTATTCTTTGACGACATTTTAGTTTATAGCAATGATATA
TGTGAACATGAGAAACACTTAGGAATGGTCTTCGCGGTTCTAAGGGATAACCAACTTTACGCAAATAAGAAGAAATGTGTTTTTGCACACTCCCGGATTCAGTATTTAAG
ACACCAGATATCAAAGGATGGGGTCAAAGCCGATGAAGATAAGATTAGAAGTATGATCAGTTACGACCATCAGACGTGTCAGGATTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MDYRKLNQATISDKFSIPVIEELLDELHGASVFSKLDLKSGYHQIRMKEEDIDKTAFRIHEGHYEFLVMPFGLTNVPTTFQSLMNQVFKPFLRRCVLVFFDDILVYSNDI
CEHEKHLGMVFAVLRDNQLYANKKKCVFAHSRIQYLRHQISKDGVKADEDKIRSMISYDHQTCQD

Cmc04g0109371 (gene) of Melon (Charmono) v1.1 genome