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Cmc04g0109701 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0109701
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr04:29065286..29065954
RNA-Seq ExpressionCmc04g0109701
SyntenyCmc04g0109701
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035531.1 uncharacterized protein E6C27_scaffold285G001970 [Cucumis melo var. makuwa]2.3e-8793.06Show/hide
Query:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG
        MEEGKIA IRDWAV KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPECQ  FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGG
Subjt:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR

KAA0036604.1 polyprotein [Cucumis melo var. makuwa]1.8e-8793.06Show/hide
Query:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG
        MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPECQA FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGG
Subjt:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR

KAA0051481.1 reverse transcriptase [Cucumis melo var. makuwa]3.9e-8792.49Show/hide
Query:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG
        MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGF KRASPLTELLKKDVHW+WDPECQA FDDLKQA+ME PLLGIA+VTKPF+VET+ASDYALGG
Subjt:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
        VLLQNGHPIAYESRKLNAA RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]5.1e-8792.49Show/hide
Query:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG
        MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPECQ  FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGG
Subjt:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-8793.06Show/hide
Query:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG
        MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPECQA FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGG
Subjt:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR

TrEMBL top hitse value%identityAlignment
A0A5A7SZ91 Polyprotein8.6e-8893.06Show/hide
Query:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG
        MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPECQA FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGG
Subjt:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR

A0A5A7T1S6 Reverse transcriptase domain-containing protein1.1e-8793.06Show/hide
Query:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG
        MEEGKIA IRDWAV KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPECQ  FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGG
Subjt:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR

A0A5A7UD54 Reverse transcriptase1.9e-8792.49Show/hide
Query:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG
        MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGF KRASPLTELLKKDVHW+WDPECQA FDDLKQA+ME PLLGIA+VTKPF+VET+ASDYALGG
Subjt:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
        VLLQNGHPIAYESRKLNAA RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR

A0A5D3C4R1 Reverse transcriptase2.5e-8792.49Show/hide
Query:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG
        MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPECQ  FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGG
Subjt:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR

A0A5D3C9P8 Reverse transcriptase8.6e-8893.06Show/hide
Query:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG
        MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPECQA FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGG
Subjt:  MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.5e-2838.24Show/hide
Query:  KIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHW-SWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLL
        KI  I+ + +     E+++FLGL  YY +F+  F+  A P+T+ LKK++   + +PE  + F  LK  + E P+L + + TK F + T+ASD ALG VL 
Subjt:  KIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHW-SWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLL

Query:  QNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
        Q+GHP++Y SR LN  E  Y+  EKE+LA+V   + +R YLLG  F + +D+      +      SK  R
Subjt:  QNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR

P0CT34 Transposon Tf2-1 polyprotein4.5e-2538.31Show/hide
Query:  IRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNG--
        +  W   K+  ELR FLG  NY  +F+   S+   PL  LLKKDV W W P      +++KQ ++  P+L   + +K   +ET+ASD A+G VL Q    
Subjt:  IRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNG--

Query:  ---HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDN
           +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL  +   F + TD+
Subjt:  ---HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDN

P0CT35 Transposon Tf2-2 polyprotein4.5e-2538.31Show/hide
Query:  IRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNG--
        +  W   K+  ELR FLG  NY  +F+   S+   PL  LLKKDV W W P      +++KQ ++  P+L   + +K   +ET+ASD A+G VL Q    
Subjt:  IRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNG--

Query:  ---HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDN
           +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL  +   F + TD+
Subjt:  ---HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDN

P0CT41 Transposon Tf2-12 polyprotein4.5e-2538.31Show/hide
Query:  IRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNG--
        +  W   K+  ELR FLG  NY  +F+   S+   PL  LLKKDV W W P      +++KQ ++  P+L   + +K   +ET+ASD A+G VL Q    
Subjt:  IRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNG--

Query:  ---HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDN
           +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL  +   F + TD+
Subjt:  ---HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDN

Q9UR07 Transposon Tf2-11 polyprotein4.5e-2538.31Show/hide
Query:  IRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNG--
        +  W   K+  ELR FLG  NY  +F+   S+   PL  LLKKDV W W P      +++KQ ++  P+L   + +K   +ET+ASD A+G VL Q    
Subjt:  IRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNG--

Query:  ---HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDN
           +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL  +   F + TD+
Subjt:  ---HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDN

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein8.4e-1138.37Show/hide
Query:  EEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPF
        +  K+  +  W   K+ +ELR FLGL  YY RFV+ + K   PLTELLKK+    W       F  LK A+   P+L + ++  PF
Subjt:  EEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGGGAAGATTGCTGTGATACGCGATTGGGCAGTGTCAAAATCAGTCTCGGAGTTACGCTCCTTCCTCGGACTGGCGAATTACTATTGTCGATTTGTCGAGGG
ATTCTCCAAACGAGCAAGCCCGCTGACTGAACTACTGAAAAAAGACGTTCACTGGAGTTGGGACCCCGAGTGCCAAGCCACCTTCGACGACCTAAAACAAGCCATGATGG
AGAGGCCACTTCTGGGGATTGCGAATGTGACCAAACCTTTCAAAGTCGAGACAAATGCGTCAGATTATGCGTTGGGGGGTGTGCTCCTGCAGAATGGGCACCCGATCGCA
TACGAAAGTCGAAAGTTGAATGCAGCCGAAAGGAGGTATACTGTATCCGAAAAAGAAATGCTCGCAGTAGTACATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTC
GTCGTTTGTAGTGAAAACGGACAACAGTGCGACCTGCCACTTCTTTACCCAGCCAAAGTTGACTTCGAAGCAAGCAAGATGA
mRNA sequenceShow/hide mRNA sequence
GAATTAGAATGGAAGAAGGGAAGATTGCTGTGATACGCGATTGGGCAGTGTCAAAATCAGTCTCGGAGTTACGCTCCTTCCTCGGACTGGCGAATTACTATTGTCGATTT
GTCGAGGGATTCTCCAAACGAGCAAGCCCGCTGACTGAACTACTGAAAAAAGACGTTCACTGGAGTTGGGACCCCGAGTGCCAAGCCACCTTCGACGACCTAAAACAAGC
CATGATGGAGAGGCCACTTCTGGGGATTGCGAATGTGACCAAACCTTTCAAAGTCGAGACAAATGCGTCAGATTATGCGTTGGGGGGTGTGCTCCTGCAGAATGGGCACC
CGATCGCATACGAAAGTCGAAAGTTGAATGCAGCCGAAAGGAGGTATACTGTATCCGAAAAAGAAATGCTCGCAGTAGTACATTGTTTGAGGGCCTGGAGACAATACCTA
CTAGGTTCGTCGTTTGTAGTGAAAACGGACAACAGTGCGACCTGCCACTTCTTTACCCAGCCAAAGTTGACTTCGAAGCAAGCAAGATGACAGGAATTTCTGGCCGAGTT
CGACTTCGAATTTGAACACAAGAAGGGGTCAAGCAACCAGGCTGCTGATGCCCTAAGTTGAAAACAAGAACATGCAGCCATATGCCTGTTAGCTGACCTCCGAGGGAGCA
AGATTGGTG
Protein sequenceShow/hide protein sequence
MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNGHPIA
YESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR