CuGenDBv2

Gene ID	Cmc04g0109711
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Genome location	CMiso1.1chr04:29075518..29075977
RNA-Seq Expression	Cmc04g0109711
Synteny	Cmc04g0109711
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0016787 - hydrolase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0042974.1 retrotransposon protein [Cucumis melo var. makuwa]

2.5e-59

89.68

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Query:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV
        MAFKIPGCNIHASTI+SRIKLMKRMFHALAEMRGP CSGFGWNDE+KCIVAEKEVFDDW  SH  VKGLLNKSF HYDELSYVFGKDRATGGRA+SFAD+
Subjt:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV

Query:  GSNDPAGYDAFAADAVPDTDLSPMYS
        GSNDPAGYDAFAADA PDT+ SPMYS
Subjt:  GSNDPAGYDAFAADAVPDTDLSPMYS

KAA0047075.1 retrotransposon protein [Cucumis melo var. makuwa]

5.1e-60

88.1

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Query:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV
        MAFKIPGCNIHASTI+SRIKLMKRMFHALAEMRGP CSGFGWNDE+KCIV EKE+FDDWVKSH   KGLLNKSF HYDELSYVFGKDRATGGRA+SF D+
Subjt:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV

Query:  GSNDPAGYDAFAADAVPDTDLSPMYS
        GSNDPAGYDAFAADA PDT+ SPMYS
Subjt:  GSNDPAGYDAFAADAVPDTDLSPMYS

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]

4.3e-59

87.3

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Query:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV
        MAFKIPGCNIHASTI+SRIKLMKRMFHALAEMRGP CSGFGWNDE+KCIV EKE+FDDWVKSH   KGLLNKSF HYDELSYVFGKDRATGGRA+SFAD+
Subjt:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV

Query:  GSNDPAGYDAFAADAVPDTDLSPMYS
        GSNDP GYDA AADA+PDTD  PMYS
Subjt:  GSNDPAGYDAFAADAVPDTDLSPMYS

TYK15304.1 retrotransposon protein [Cucumis melo var. makuwa]

2.5e-59

88.89

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Query:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV
        MAFKIPGCNIHASTI+SRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIV EKEVFDDWVKSH   KGLLNKSF HYDE  YVFGKDRATGGRAKSFADV
Subjt:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV

Query:  GSNDPAGYDAFAADAVPDTDLSPMYS
        GSN+P GYDAF ADA PDTD  PMYS
Subjt:  GSNDPAGYDAFAADAVPDTDLSPMYS

XP_008466949.1 PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo]

2.3e-60

89.68

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Query:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV
        MAFKIPG NIHASTI+SRIKLMKRMFHALAEMRGP CSGFGWNDE+KCIVAEKEVFDDWVKSH T KGLLNKSF HYDELSYVFGKDRATGGRA+SFAD+
Subjt:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV

Query:  GSNDPAGYDAFAADAVPDTDLSPMYS
        GSNDP GYDAFAADA+PDTD  PMYS
Subjt:  GSNDPAGYDAFAADAVPDTDLSPMYS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CTN6 uncharacterized protein LOC103504332

1.1e-60

89.68

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Query:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV
        MAFKIPG NIHASTI+SRIKLMKRMFHALAEMRGP CSGFGWNDE+KCIVAEKEVFDDWVKSH T KGLLNKSF HYDELSYVFGKDRATGGRA+SFAD+
Subjt:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV

Query:  GSNDPAGYDAFAADAVPDTDLSPMYS
        GSNDP GYDAFAADA+PDTD  PMYS
Subjt:  GSNDPAGYDAFAADAVPDTDLSPMYS

A0A5A7TI07 Retrotransposon protein

1.2e-59

89.68

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Query:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV
        MAFKIPGCNIHASTI+SRIKLMKRMFHALAEMRGP CSGFGWNDE+KCIVAEKEVFDDW  SH  VKGLLNKSF HYDELSYVFGKDRATGGRA+SFAD+
Subjt:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV

Query:  GSNDPAGYDAFAADAVPDTDLSPMYS
        GSNDPAGYDAFAADA PDT+ SPMYS
Subjt:  GSNDPAGYDAFAADAVPDTDLSPMYS

A0A5A7U098 Retrotransposon protein

2.5e-60

88.1

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Query:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV
        MAFKIPGCNIHASTI+SRIKLMKRMFHALAEMRGP CSGFGWNDE+KCIV EKE+FDDWVKSH   KGLLNKSF HYDELSYVFGKDRATGGRA+SF D+
Subjt:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV

Query:  GSNDPAGYDAFAADAVPDTDLSPMYS
        GSNDPAGYDAFAADA PDT+ SPMYS
Subjt:  GSNDPAGYDAFAADAVPDTDLSPMYS

A0A5D3C1M0 Retrotransposon protein

2.1e-59

87.3

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Query:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV
        MAFKIPGCNIHASTI+SRIKLMKRMFHALAEMRGP CSGFGWNDE+KCIV EKE+FDDWVKSH   KGLLNKSF HYDELSYVFGKDRATGGRA+SFAD+
Subjt:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV

Query:  GSNDPAGYDAFAADAVPDTDLSPMYS
        GSNDP GYDA AADA+PDTD  PMYS
Subjt:  GSNDPAGYDAFAADAVPDTDLSPMYS

A0A5D3CWJ7 Retrotransposon protein

1.2e-59

88.89

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Query:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV
        MAFKIPGCNIHASTI+SRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIV EKEVFDDWVKSH   KGLLNKSF HYDE  YVFGKDRATGGRAKSFADV
Subjt:  MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADV

Query:  GSNDPAGYDAFAADAVPDTDLSPMYS
        GSN+P GYDAF ADA PDTD  PMYS
Subjt:  GSNDPAGYDAFAADAVPDTDLSPMYS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G30140.1 unknown protein

6.1e-11

33.33

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Query:  GCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFAD
        GCN +     SR+K +K ++ +  +++    SGFGW+ E K   A  EV+ D++K+H   K +  +S  H+++L  +FG   ATG  A   +D
Subjt:  GCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFAD

AT4G02210.1 unknown protein

1.0e-05

23.38

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Query:  NIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFG
        N     + +R K ++R F+A+  +      GF W++E++ + A+  V+ D++K+H+  +  + +   +Y +L  + G
Subjt:  NIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFG

AT4G02210.2 unknown protein

1.0e-05

23.38

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Query:  NIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFG
        N     + +R K ++R F+A+  +      GF W++E++ + A+  V+ D++K+H+  +  + +   +Y +L  + G
Subjt:  NIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFG

Sequences

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CDS sequence

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ATGGCCTTCAAGATCCCAGGTTGTAATATCCATGCTTCAACGATCAATAGCCGAATCAAATTGATGAAGAGAATGTTCCATGCACTTGCGGAGATGCGTGGCCCAACGTG
CAGTGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGACGATTGGGTCAAGAGTCATCAGACGGTGAAGGGCCTCCTTAATAAGTCGT
TTTTCCACTATGACGAACTGTCGTACGTGTTTGGCAAAGATCGTGCAACGGGAGGCCGGGCCAAGAGTTTTGCGGACGTTGGATCAAACGATCCTGCTGGGTATGACGCA
TTTGCCGCTGACGCAGTGCCGGATACAGACTTATCGCCAATGTACAGTTAG

mRNA sequence

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Protein sequence

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MAFKIPGCNIHASTINSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKDRATGGRAKSFADVGSNDPAGYDA
FAADAVPDTDLSPMYS

Cmc04g0109711 (gene) of Melon (Charmono) v1.1 genome