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Cmc04g0110041 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0110041
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr04:29343214..29343753
RNA-Seq ExpressionCmc04g0110041
SyntenyCmc04g0110041
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7112891.1 hypothetical protein RHSIM_RhsimUnG0182300 [Rhododendron simsii]1.2e-5155.44Show/hide
Query:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE
        M+ EEAWSG R  VDHF+IFGC+AYAHIP QKR KLDDKGEKC+FLGVSDQSKAYKLYNP TKKI+ SRDV+FDE   W W  +V  +Q+ T+FDG +D+
Subjt:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE

Query:  SQKSAECDQLGSTDGLVNPTS--------LSTTSGNEE--------RPQRTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKD
            ++   + +   L NP +          TT   +E        R  R R++PAWM+DYEV GID+S+DPLT+FAL S  DPT+FE A+KD
Subjt:  SQKSAECDQLGSTDGLVNPTS--------LSTTSGNEE--------RPQRTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKD

KAF7147957.1 hypothetical protein RHSIM_Rhsim03G0172600 [Rhododendron simsii]2.3e-5355.96Show/hide
Query:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE
        M+ EEAWSG +  VDHF+IFGC+AYAHIP QKR KLDDKGEKC+FLGVSDQSKAYKLYNP TKKI+ SRDV+FDE   W W  +V ++Q+ T+FDG DD+
Subjt:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE

Query:  SQKSAECDQLGSTDGLVNPTS--------LSTTSGNEE--------RPQRTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKD
          K ++   + +  GL NP +          TT   +E        R  R R++PAWM+DYEV GID+S+DPLT+FAL S  DPT+FE A+K+
Subjt:  SQKSAECDQLGSTDGLVNPTS--------LSTTSGNEE--------RPQRTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKD

KAF7150925.1 hypothetical protein RHSIM_Rhsim02G0113200 [Rhododendron simsii]8.6e-5355.96Show/hide
Query:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE
        M+ EEAWSG R  VDHF+IFGC+AYAHIP QKR KLDDKGEKC+FLGVSDQSKAYKLYNP TKKI+ SRDV+FDE   W W  +V ++Q+ T+FDG DD+
Subjt:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE

Query:  SQKSAECDQLGSTDGLVNPTS--------LSTTSGNEE--------RPQRTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKD
          K ++   + +  GL  P +          TT   +E        R  R +++PAWM+DYEV GID+S+DPLT+FAL S  DPT+FE AI D
Subjt:  SQKSAECDQLGSTDGLVNPTS--------LSTTSGNEE--------RPQRTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKD

RVX03481.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]9.5e-5256.42Show/hide
Query:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE
        M+ +EAWS  +L VDHF+IFGCIAYAHIP +K  KLD+KGEKC+F  VSD+SKAYKL+NP T KII SRDVVFDE+N W WK++  K+ +  +FD  D++
Subjt:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE

Query:  SQKSAECDQLGSTDGLVNPTSLSTTSGNEERPQRTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKDPK
         Q+  E +Q       V     +  +   +RPQR RR+P WMT+YEV G+D+ +DPLTYFAL SY DPTIFE A+K+PK
Subjt:  SQKSAECDQLGSTDGLVNPTSLSTTSGNEERPQRTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKDPK

TYK16550.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.2e-5781.56Show/hide
Query:  EEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDD-ESQ
        EEAWSGWR KVD+FKIFGCIAYAHI  QKRTKLDDKGEKC+FLGV DQSKAYKLYNP TKKII +RDVVFD+E F QW K VA+KQ+STNFD IDD ESQ
Subjt:  EEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDD-ESQ

Query:  KSAECDQLGSTDGLVNPTSLSTTSGNEERPQRTRRKPAWMT
        K  E DQLGS DG +NP SLSTTS NEERPQRTRRKPAWMT
Subjt:  KSAECDQLGSTDGLVNPTSLSTTSGNEERPQRTRRKPAWMT

TrEMBL top hitse value%identityAlignment
A0A438E4G4 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-5055.87Show/hide
Query:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE
        M+ +EA S  +L VDHF+IFGCIAYAHIP +K  KLD+KGEKC+F  VSD+SKAYKL+NP T KII SRDVVFDE+N W WK++  K+ +  +FD  D++
Subjt:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE

Query:  SQKSAECDQLGSTDGLVNPTSLSTTSGNEERPQRTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKDPK
         Q+  E +Q       V     +  +   +RPQR RR+P WMT+YEV G+D+ +DPLTYFAL SY DPTIFE A+K+PK
Subjt:  SQKSAECDQLGSTDGLVNPTSLSTTSGNEERPQRTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKDPK

A0A438I5N6 Retrovirus-related Pol polyprotein from transposon TNT 1-947.3e-5052.6Show/hide
Query:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE
        ++ EEAW+G +  V+HF+IFGCIAYAHIP QKR KLDDKGEKC+FLGVS+ SKAYKLYNP TKKI+ SRD++FDE +FW+W  +  K+Q+  +FDG ++E
Subjt:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE

Query:  SQKSAECDQLGSTDGLVN--PTSLS---TTSGNEERPQ--------RTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKDPK
         ++     Q+ + +   N  PT+     TT   +E+ +        R R++PAWM+DYEV GID+S DPLT+FAL S  DPT FE A+K+ K
Subjt:  SQKSAECDQLGSTDGLVN--PTSLS---TTSGNEERPQ--------RTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKDPK

A0A438IWS5 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-5051.56Show/hide
Query:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE
        ++ +EAW+G +  V+HF+IFGCIAYAHIP QKR KLDDKGEKC+FLGVS+ SKAYKLYNP TKKI+ SRD++F E +FW+W  +  K+++  +FDG ++E
Subjt:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE

Query:  SQKSAECDQLGSTDGLVN--PTSLSTTSGNEE-----------RPQRTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKDPK
         ++     Q+ + +   N  PT++ T+    E              R R++PAWM+DYEVIGID+S DPLT+FAL SY DPT FE A+K+ K
Subjt:  SQKSAECDQLGSTDGLVN--PTSLSTTSGNEE-----------RPQRTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKDPK

A0A438J3D6 Retrovirus-related Pol polyprotein from transposon TNT 1-944.6e-5256.42Show/hide
Query:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE
        M+ +EAWS  +L VDHF+IFGCIAYAHIP +K  KLD+KGEKC+F  VSD+SKAYKL+NP T KII SRDVVFDE+N W WK++  K+ +  +FD  D++
Subjt:  MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDE

Query:  SQKSAECDQLGSTDGLVNPTSLSTTSGNEERPQRTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKDPK
         Q+  E +Q       V     +  +   +RPQR RR+P WMT+YEV G+D+ +DPLTYFAL SY DPTIFE A+K+PK
Subjt:  SQKSAECDQLGSTDGLVNPTSLSTTSGNEERPQRTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKDPK

A0A5D3CYW3 Retrovirus-related Pol polyprotein from transposon TNT 1-945.6e-5881.56Show/hide
Query:  EEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDD-ESQ
        EEAWSGWR KVD+FKIFGCIAYAHI  QKRTKLDDKGEKC+FLGV DQSKAYKLYNP TKKII +RDVVFD+E F QW K VA+KQ+STNFD IDD ESQ
Subjt:  EEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDD-ESQ

Query:  KSAECDQLGSTDGLVNPTSLSTTSGNEERPQRTRRKPAWMT
        K  E DQLGS DG +NP SLSTTS NEERPQRTRRKPAWMT
Subjt:  KSAECDQLGSTDGLVNPTSLSTTSGNEERPQRTRRKPAWMT

SwissProt top hitse value%identityAlignment
P04146 Copia protein8.7e-0838.36Show/hide
Query:  EAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEEN
        E W   +  + H ++FG   Y HI K K+ K DDK  K +F+G   +   +KL++   +K I +RDVV DE N
Subjt:  EAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEEN

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-1750Show/hide
Query:  EEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDE
        E  W+   +   H K+FGC A+AH+PK++RTKLDDK   C+F+G  D+   Y+L++P  KK+I SRDVVF E
Subjt:  EEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDE

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE19.7e-0740.62Show/hide
Query:  DHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENF
        D  ++FGC  Y  +    + KLDDK  +CVFLG S    AY   +  T ++  SR V FDE  F
Subjt:  DHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCGGAGGAAGCATGGAGCGGATGGAGGCTGAAGGTAGATCATTTCAAAATTTTTGGGTGTATTGCCTATGCCCATATTCCAAAACAAAAGCGAACAAAGCTAGA
TGACAAAGGAGAAAAGTGTGTCTTTCTTGGTGTAAGTGATCAATCAAAAGCTTACAAGCTTTATAATCCTTGCACTAAGAAAATTATAACCAGTCGTGATGTAGTTTTTG
ATGAAGAAAATTTTTGGCAATGGAAAAAAAGTGTTGCTAAAAAACAAATGTCCACAAATTTTGATGGAATTGATGATGAGTCACAAAAGTCAGCAGAATGTGATCAACTC
GGTTCAACAGATGGTCTGGTTAATCCAACAAGCTTGTCAACAACATCAGGCAATGAAGAAAGACCTCAACGTACTAGAAGAAAACCAGCATGGATGACAGACTATGAGGT
GATAGGAATCGATGAATCTAATGACCCGCTTACATATTTTGCTCTATGTTCCTATTCTGATCCTACGATTTTTGAAGAAGCTATTAAGGATCCAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCGGAGGAAGCATGGAGCGGATGGAGGCTGAAGGTAGATCATTTCAAAATTTTTGGGTGTATTGCCTATGCCCATATTCCAAAACAAAAGCGAACAAAGCTAGA
TGACAAAGGAGAAAAGTGTGTCTTTCTTGGTGTAAGTGATCAATCAAAAGCTTACAAGCTTTATAATCCTTGCACTAAGAAAATTATAACCAGTCGTGATGTAGTTTTTG
ATGAAGAAAATTTTTGGCAATGGAAAAAAAGTGTTGCTAAAAAACAAATGTCCACAAATTTTGATGGAATTGATGATGAGTCACAAAAGTCAGCAGAATGTGATCAACTC
GGTTCAACAGATGGTCTGGTTAATCCAACAAGCTTGTCAACAACATCAGGCAATGAAGAAAGACCTCAACGTACTAGAAGAAAACCAGCATGGATGACAGACTATGAGGT
GATAGGAATCGATGAATCTAATGACCCGCTTACATATTTTGCTCTATGTTCCTATTCTGATCCTACGATTTTTGAAGAAGCTATTAAGGATCCAAAATGA
Protein sequenceShow/hide protein sequence
MSSEEAWSGWRLKVDHFKIFGCIAYAHIPKQKRTKLDDKGEKCVFLGVSDQSKAYKLYNPCTKKIITSRDVVFDEENFWQWKKSVAKKQMSTNFDGIDDESQKSAECDQL
GSTDGLVNPTSLSTTSGNEERPQRTRRKPAWMTDYEVIGIDESNDPLTYFALCSYSDPTIFEEAIKDPK