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Cmc04g0110221 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0110221
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr04:29493800..29494243
RNA-Seq ExpressionCmc04g0110221
SyntenyCmc04g0110221
Gene Ontology termsGO:0000209 - protein polyubiquitination (biological process)
GO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0007034 - vacuolar transport (biological process)
GO:0015074 - DNA integration (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0005768 - endosome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004601 - peroxidase activity (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047225.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-4674.19Show/hide
Query:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA
        M+EH+ HLE+V EVLREHK+YANKKKC+FA+QRVEYLG+IVS +GV  DP+KI+SIKQ  VP+NVRE RGFLGLTGY RRF+Q+YGS+ APLTQLLKLGA
Subjt:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA

Query:  FRWSEEAQLAFERLKEAMMTLPVL
        F+W+++AQLAF RL+EAMMT P+L
Subjt:  FRWSEEAQLAFERLKEAMMTLPVL

KAA0061363.1 peroxidase 64 [Cucumis melo var. makuwa]2.4e-4580.53Show/hide
Query:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA
        MEEHIYHLELV EVLREHK+YANKKKC+FAFQ+VEYLG+IVS QGV  DPEK +SIKQW VP+NVRE  GFLGL GY RRFVQNYGS+ APLTQLLKL A
Subjt:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA

Query:  FRWSEEAQLAFER
        F+W+EEAQLAF+R
Subjt:  FRWSEEAQLAFER

KAA0068083.1 peroxidase 64 [Cucumis melo var. makuwa]2.1e-4982.26Show/hide
Query:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA
        +EEHIYHLELV EVLREHK+YAN KKC+FAFQ+VEYLG+IVS QGV  DPEKI+SIKQWLVP+NVRE RGFLGLTGY +RFVQNYGS+ APLTQLLKLGA
Subjt:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA

Query:  FRWSEEAQLAFERLKEAMMTLPVL
        F+W+EEA LAF+RLKE MMTLPVL
Subjt:  FRWSEEAQLAFERLKEAMMTLPVL

TYK21761.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]1.3e-4674.19Show/hide
Query:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA
        M+EH+ HLE+V EVLREHK+YANKKKC+FA+QRVEYLG+IVS +GV  DP+KI+SIKQ  VP+NVRE RGFLGLTGY RRF+Q+YGS+ APLTQLLKLGA
Subjt:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA

Query:  FRWSEEAQLAFERLKEAMMTLPVL
        F+W+++AQLAF RL+EAMMT P+L
Subjt:  FRWSEEAQLAFERLKEAMMTLPVL

TYK26068.1 E3 ubiquitin-protein ligase CHIP [Cucumis melo var. makuwa]3.1e-4881.45Show/hide
Query:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA
        +EEHIYHLELV EVLREHK+YAN KKC+FAFQ+VEYLG+IVS QGV  D EKI+SIKQWLVP+NVRE RGFLGLTGY +RFVQNYGS+ APLTQLLKLGA
Subjt:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA

Query:  FRWSEEAQLAFERLKEAMMTLPVL
        F+W+EEA LAF+RLKE MMTLPVL
Subjt:  FRWSEEAQLAFERLKEAMMTLPVL

TrEMBL top hitse value%identityAlignment
A0A5A7U0Q5 Reverse transcriptase6.2e-4774.19Show/hide
Query:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA
        M+EH+ HLE+V EVLREHK+YANKKKC+FA+QRVEYLG+IVS +GV  DP+KI+SIKQ  VP+NVRE RGFLGLTGY RRF+Q+YGS+ APLTQLLKLGA
Subjt:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA

Query:  FRWSEEAQLAFERLKEAMMTLPVL
        F+W+++AQLAF RL+EAMMT P+L
Subjt:  FRWSEEAQLAFERLKEAMMTLPVL

A0A5A7VJ08 Peroxidase 641.0e-4982.26Show/hide
Query:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA
        +EEHIYHLELV EVLREHK+YAN KKC+FAFQ+VEYLG+IVS QGV  DPEKI+SIKQWLVP+NVRE RGFLGLTGY +RFVQNYGS+ APLTQLLKLGA
Subjt:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA

Query:  FRWSEEAQLAFERLKEAMMTLPVL
        F+W+EEA LAF+RLKE MMTLPVL
Subjt:  FRWSEEAQLAFERLKEAMMTLPVL

A0A5D3CU29 Peroxidase 641.2e-4580.53Show/hide
Query:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA
        MEEHIYHLELV EVLREHK+YANKKKC+FAFQ+VEYLG+IVS QGV  DPEK +SIKQW VP+NVRE  GFLGL GY RRFVQNYGS+ APLTQLLKL A
Subjt:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA

Query:  FRWSEEAQLAFER
        F+W+EEAQLAF+R
Subjt:  FRWSEEAQLAFER

A0A5D3DDL8 Transposon Tf2-6 polyprotein6.2e-4774.19Show/hide
Query:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA
        M+EH+ HLE+V EVLREHK+YANKKKC+FA+QRVEYLG+IVS +GV  DP+KI+SIKQ  VP+NVRE RGFLGLTGY RRF+Q+YGS+ APLTQLLKLGA
Subjt:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA

Query:  FRWSEEAQLAFERLKEAMMTLPVL
        F+W+++AQLAF RL+EAMMT P+L
Subjt:  FRWSEEAQLAFERLKEAMMTLPVL

A0A5D3DR86 E3 ubiquitin-protein ligase CHIP1.5e-4881.45Show/hide
Query:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA
        +EEHIYHLELV EVLREHK+YAN KKC+FAFQ+VEYLG+IVS QGV  D EKI+SIKQWLVP+NVRE RGFLGLTGY +RFVQNYGS+ APLTQLLKLGA
Subjt:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA

Query:  FRWSEEAQLAFERLKEAMMTLPVL
        F+W+EEA LAF+RLKE MMTLPVL
Subjt:  FRWSEEAQLAFERLKEAMMTLPVL

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.8e-1734.13Show/hide
Query:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLK--L
        ++EH+  L LVFE L +  +     KC F  Q   +LG++++  G+  +PEKI++I+++ +P+  +E + FLGLTGY R+F+ N+  +  P+T+ LK  +
Subjt:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLK--L

Query:  GAFRWSEEAQLAFERLKEAMMTLPVL
             + E   AF++LK  +   P+L
Subjt:  GAFRWSEEAQLAFERLKEAMMTLPVL

P20825 Retrovirus-related Pol polyprotein from transposon 2972.5e-1634.13Show/hide
Query:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA
        + EH+  ++LVF  L +  +     KC F  +   +LG+IV+  G+  +P K+K+I  + +P+  +E R FLGLTGY R+F+ NY  +  P+T  LK   
Subjt:  MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGA

Query:  FRWSEEAQL--AFERLKEAMMTLPVL
           +++ +   AFE+LK  ++  P+L
Subjt:  FRWSEEAQL--AFERLKEAMMTLPVL

P92523 Uncharacterized mitochondrial protein AtMg008602.3e-3051.67Show/hide
Query:  HLELVFEVLREHKIYANKKKCNFAFQRVEYLG--YIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGAFRWS
        HL +V ++  +H+ YAN+KKC F   ++ YLG  +I+S +GV ADP K++++  W  P N  E RGFLGLTGY RRFV+NYG +  PLT+LLK  + +W+
Subjt:  HLELVFEVLREHKIYANKKKCNFAFQRVEYLG--YIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGAFRWS

Query:  EEAQLAFERLKEAMMTLPVL
        E A LAF+ LK A+ TLPVL
Subjt:  EEAQLAFERLKEAMMTLPVL

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.9e-1635.48Show/hide
Query:  EEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGAF
        EEH  HL+ V E L+   +   KKKC FA +  E+LGY +  Q +     K  +I+ +  P  V++ + FLG+  Y RRF+ N   +  P+ QL      
Subjt:  EEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGAF

Query:  RWSEEAQLAFERLKEAMMTLPVLL
        +W+E+   A E+LK A+   PVL+
Subjt:  RWSEEAQLAFERLKEAMMTLPVLL

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.9e-1634.68Show/hide
Query:  EEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGAF
        EEH  HL+ V E L+   +   KKKC FA +  E+LGY +  Q +     K  +I+ +  P  V++ + FLG+  Y RRF+ N   +  P+ QL      
Subjt:  EEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGAF

Query:  RWSEEAQLAFERLKEAMMTLPVLL
        +W+E+   A ++LK+A+   PVL+
Subjt:  RWSEEAQLAFERLKEAMMTLPVLL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.6e-3151.67Show/hide
Query:  HLELVFEVLREHKIYANKKKCNFAFQRVEYLG--YIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGAFRWS
        HL +V ++  +H+ YAN+KKC F   ++ YLG  +I+S +GV ADP K++++  W  P N  E RGFLGLTGY RRFV+NYG +  PLT+LLK  + +W+
Subjt:  HLELVFEVLREHKIYANKKKCNFAFQRVEYLG--YIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGAFRWS

Query:  EEAQLAFERLKEAMMTLPVL
        E A LAF+ LK A+ TLPVL
Subjt:  EEAQLAFERLKEAMMTLPVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGCATATATATCATTTAGAATTGGTATTTGAAGTATTACGTGAACATAAGATCTATGCTAATAAGAAGAAGTGCAATTTCGCATTTCAGAGAGTGGAG
TACCTTGGCTATATCGTTTCAAGTCAAGGAGTAGGGGCTGACCCGGAGAAGATCAAATCCATTAAACAGTGGCTAGTGCCTTCAAATGTGAGAGAATTTAGGGGA
TTTTTGGGGCTCACTGGTTACAATCGAAGGTTTGTACAAAATTATGGGTCCGTTACTGCTCCATTAACTCAGTTGTTGAAATTAGGGGCTTTTAGGTGGAGTGAA
GAAGCTCAATTGGCTTTTGAAAGACTGAAGGAAGCCATGATGACATTACCGGTGTTGCTTTACCAGATTTTAATCTTCCATTTGAAGTGGAAACTGATGCATTTG
GCCATGGTATTGGAGCGGTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAGCATATATATCATTTAGAATTGGTATTTGAAGTATTACGTGAACATAAGATCTATGCTAATAAGAAGAAGTGCAATTTCGCATTTCAGAGAGTGGAG
TACCTTGGCTATATCGTTTCAAGTCAAGGAGTAGGGGCTGACCCGGAGAAGATCAAATCCATTAAACAGTGGCTAGTGCCTTCAAATGTGAGAGAATTTAGGGGA
TTTTTGGGGCTCACTGGTTACAATCGAAGGTTTGTACAAAATTATGGGTCCGTTACTGCTCCATTAACTCAGTTGTTGAAATTAGGGGCTTTTAGGTGGAGTGAA
GAAGCTCAATTGGCTTTTGAAAGACTGAAGGAAGCCATGATGACATTACCGGTGTTGCTTTACCAGATTTTAATCTTCCATTTGAAGTGGAAACTGATGCATTTG
GCCATGGTATTGGAGCGGTTTTAA
Protein sequenceShow/hide protein sequence
MEEHIYHLELVFEVLREHKIYANKKKCNFAFQRVEYLGYIVSSQGVGADPEKIKSIKQWLVPSNVREFRGFLGLTGYNRRFVQNYGSVTAPLTQLLKLGAFRWSE
EAQLAFERLKEAMMTLPVLLYQILIFHLKWKLMHLAMVLERF