; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0110671 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0110671
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
Genome locationCMiso1.1chr04:29924110..29924802
RNA-Seq ExpressionCmc04g0110671
SyntenyCmc04g0110671
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036923.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-7781.15Show/hide
Query:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF
        MIHESDLVCR+STRMD+RTFAILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS ETVSR+FNIVL  V+RLYE  +KR  P    
Subjt:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF

Query:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQNNDASY
           NC GALD TYIKVNVPAGDR TFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDA+SQENGLQVPKG  Y     DA Y
Subjt:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQNNDASY

KAA0037743.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-7778.28Show/hide
Query:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYV--
        MIHESDLVCR+STRMD+RTFAILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHD+KNRVIQREFVRS ETVSR+FNIVL  V+RLYE  IKR  P    
Subjt:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYV--

Query:  -----YFNLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQNNDASY
             +   +NC GALD+TYIKVNVPAGDR TFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDA+SQENGLQVPKG  Y     DA Y
Subjt:  -----YFNLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQNNDASY

KAA0042501.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-7781.15Show/hide
Query:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF
        MIHESDLVCR+STRMD+RTFAILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS ETVSRYFNIVL  V+RLYE  IKR  P    
Subjt:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF

Query:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQNNDASY
           NC GALD TYIKVNVPAGDR TFRT KG+IATNVLGVCDTKGDFVYVL GW+GSAADSRILRDA+S+ENGLQVPKG  Y     DA Y
Subjt:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQNNDASY

KAA0047370.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-7785.71Show/hide
Query:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF
        MIHESD+VCR+S RMD+RTF ILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS ETVSR+FNIVL  VV+LYE  IKR  P +Y 
Subjt:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF

Query:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQ
        NLQNC GALD TYIKVNVP GDRSTFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDALSQENGLQ
Subjt:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQ

TYK14046.1 retrotransposon protein [Cucumis melo var. makuwa]3.7e-8184.32Show/hide
Query:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF
        MIHESD+VCR+S RMD+RTF ILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS ETVSR+FNIVL  VV+LYE  IKR  P +Y 
Subjt:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF

Query:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQ
        NLQNC GALD TYIKVNVP GDRSTFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDALSQENGLQVPKG  Y  Q
Subjt:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQ

TrEMBL top hitse value%identityAlignment
A0A5A7T1V5 Retrotransposon protein1.2e-7781.15Show/hide
Query:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF
        MIHESDLVCR+STRMD+RTFAILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS ETVSR+FNIVL  V+RLYE  +KR  P    
Subjt:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF

Query:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQNNDASY
           NC GALD TYIKVNVPAGDR TFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDA+SQENGLQVPKG  Y     DA Y
Subjt:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQNNDASY

A0A5A7T441 Retrotransposon protein1.2e-7778.28Show/hide
Query:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYV--
        MIHESDLVCR+STRMD+RTFAILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHD+KNRVIQREFVRS ETVSR+FNIVL  V+RLYE  IKR  P    
Subjt:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYV--

Query:  -----YFNLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQNNDASY
             +   +NC GALD+TYIKVNVPAGDR TFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDA+SQENGLQVPKG  Y     DA Y
Subjt:  -----YFNLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQNNDASY

A0A5A7TLQ0 Retrotransposon protein1.6e-7781.15Show/hide
Query:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF
        MIHESDLVCR+STRMD+RTFAILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS ETVSRYFNIVL  V+RLYE  IKR  P    
Subjt:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF

Query:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQNNDASY
           NC GALD TYIKVNVPAGDR TFRT KG+IATNVLGVCDTKGDFVYVL GW+GSAADSRILRDA+S+ENGLQVPKG  Y     DA Y
Subjt:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQNNDASY

A0A5A7TW41 Retrotransposon protein5.4e-7885.71Show/hide
Query:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF
        MIHESD+VCR+S RMD+RTF ILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS ETVSR+FNIVL  VV+LYE  IKR  P +Y 
Subjt:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF

Query:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQ
        NLQNC GALD TYIKVNVP GDRSTFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDALSQENGLQ
Subjt:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQ

A0A5D3CUG9 Retrotransposon protein1.8e-8184.32Show/hide
Query:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF
        MIHESD+VCR+S RMD+RTF ILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS ETVSR+FNIVL  VV+LYE  IKR  P +Y 
Subjt:  MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYF

Query:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQ
        NLQNC GALD TYIKVNVP GDRSTFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDALSQENGLQVPKG  Y  Q
Subjt:  NLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein1.2e-1326.53Show/hide
Query:  IHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVV-------------VRLYE
        + +    C +  RM    F  LC++L+T   L  T  + +EE VAMFL +  H+   R +   F R+ ETV R F  VL                  LY 
Subjt:  IHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVV-------------VRLYE

Query:  VFIKRSAPYVYFNLQNCF-GALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYF
        +  +      Y+   + F GA+D T++ V V    +  +     + + N++ +CD K  F Y+  G  GS  D+ +L+ A   ++   +P    Y+
Subjt:  VFIKRSAPYVYFNLQNCF-GALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYF

AT5G28730.1 unknown protein4.3e-1128.8Show/hide
Query:  IHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYFN
        I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL + A +   R I   F  + ET+ R F+ VL  + RL   +I+   P     
Subjt:  IHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYFN

Query:  LQNCFGAL--DKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYF
        L+     L  D  Y                 G  + NVL +CD    F Y   G  GS  D+R+L  A+S +    VP    Y+
Subjt:  LQNCFGAL--DKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYF

AT5G28950.1 unknown protein4.1e-1442.53Show/hide
Query:  RSAPYVYFNLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQ-ENGLQVPK
        R +  +Y   ++C GA+D T+I   V      +FR  KGDI+ N+L  C+   +F+YVL+GW+GSA DS++L DAL++  N L VP+
Subjt:  RSAPYVYFNLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQ-ENGLQVPK

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)5.6e-2736.36Show/hide
Query:  CRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVF---------IKRSAPYVY
        C ++ RMDK  F  LC LL+T   L  T  + +E  +A+FL ++ H+++ R +Q  F  S ET+SR+FN VL  V+ + + F         ++   PY  
Subjt:  CRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVF---------IKRSAPYVY

Query:  FNLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQN
           ++C G +D  +I V V   ++  FR   G +  NVL        F YVLAGW+GSA+D ++L  AL++ N LQVP+G  Y   N
Subjt:  FNLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACACGAGTCTGATCTTGTGTGTCGCAAAAGCACACGAATGGACAAGCGAACATTCGCAATTCTATGCCACTTACTTAGGACTGTATCTGGTCTTTCATCGACAGA
GATTGTCGATGTCGAGGAAATGGTTGCAATGTTCTTGCACGTCCTTGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCAGTGAGACAGTATCTC
GATATTTTAACATCGTATTGTTCGTTGTGGTTCGACTGTATGAGGTGTTTATAAAGAGATCTGCTCCGTATGTTTATTTCAACCTGCAGAATTGCTTTGGTGCGTTAGAC
AAGACGTATATAAAGGTCAACGTCCCTGCAGGAGATCGGTCTACATTCAGAACGTGTAAGGGGGATATTGCCACAAACGTTCTGGGGGTGTGCGACACGAAAGGTGATTT
CGTTTATGTCCTCGCCGGTTGGAAAGGATCCGCAGCAGACTCGCGGATTCTACGTGATGCCCTTTCACAAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTATTTTT
TCCAAAACAACGATGCTTCCTACTTACGTATTCAAAGCGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATACACGAGTCTGATCTTGTGTGTCGCAAAAGCACACGAATGGACAAGCGAACATTCGCAATTCTATGCCACTTACTTAGGACTGTATCTGGTCTTTCATCGACAGA
GATTGTCGATGTCGAGGAAATGGTTGCAATGTTCTTGCACGTCCTTGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCAGTGAGACAGTATCTC
GATATTTTAACATCGTATTGTTCGTTGTGGTTCGACTGTATGAGGTGTTTATAAAGAGATCTGCTCCGTATGTTTATTTCAACCTGCAGAATTGCTTTGGTGCGTTAGAC
AAGACGTATATAAAGGTCAACGTCCCTGCAGGAGATCGGTCTACATTCAGAACGTGTAAGGGGGATATTGCCACAAACGTTCTGGGGGTGTGCGACACGAAAGGTGATTT
CGTTTATGTCCTCGCCGGTTGGAAAGGATCCGCAGCAGACTCGCGGATTCTACGTGATGCCCTTTCACAAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTATTTTT
TCCAAAACAACGATGCTTCCTACTTACGTATTCAAAGCGCTTAA
Protein sequenceShow/hide protein sequence
MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYFNLQNCFGALD
KTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQNNDASYLRIQSA