; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0110681 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0110681
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
Genome locationCMiso1.1chr04:29934787..29935410
RNA-Seq ExpressionCmc04g0110681
SyntenyCmc04g0110681
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031556.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-8580.68Show/hide
Query:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN
        MIHESDLVCRQST+M+RRTFAILC L RNVAGLSSTEI+DV+EMVAMFLHVLAHDVKNR+IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV VTSN
Subjt:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN

Query:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA
         NDQRWKCFE                          NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVL VCDTKGDFVYVL+GWE SA DSRILRDA
Subjt:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA

Query:  ISQENGL
        IS+ENGL
Subjt:  ISQENGL

KAA0052321.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-8480.19Show/hide
Query:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN
        MIHESDLVCRQST+M+RRTFAILC L RNVAGLSSTEI+DV+EMVAMFLHVLAHDVKNR+IQ+EFVRSGETVSRHFNIVLLAVLRLYEELIKRPV VTSN
Subjt:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN

Query:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA
         NDQRWKCFE                          NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVL VCD KGDFVYVL+GWE SA DSRILRDA
Subjt:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA

Query:  ISQENGL
        ISQENGL
Subjt:  ISQENGL

KAA0056561.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-8580.68Show/hide
Query:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN
        MIHESDLVCRQST+M+RRTFAILC L RNVAGLSSTEI+DV+EMVAMFLHVLAHDVKNR+IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV VTSN
Subjt:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN

Query:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA
         NDQRWKCFE                          NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVL VCDTKGDFVYVL+GWE SA DSRILRDA
Subjt:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA

Query:  ISQENGL
        IS+ENGL
Subjt:  ISQENGL

KAA0064809.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-8480.19Show/hide
Query:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN
        MIHE DLVCRQST+M+RRTFAILC L RNVAGLSSTEI+DV+EMVAMFLHVLAHDVKNR+IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV VTSN
Subjt:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN

Query:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA
         NDQRWKCFE                          NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVL VCDTKGDFVYVL+GWE SA DSRILRDA
Subjt:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA

Query:  ISQENGL
        IS+ENGL
Subjt:  ISQENGL

TYK27061.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-8580.68Show/hide
Query:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN
        MIHESDLVCRQST+M+RRTFAILC L RNVAGLSSTEI+DV+EMVAMFLHVLAHDVKNR+IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV VTSN
Subjt:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN

Query:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA
         NDQRWKCFE                          NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVL VCDTKGDFVYVL+GWE SA DSRILRDA
Subjt:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA

Query:  ISQENGL
        IS+ENGL
Subjt:  ISQENGL

TrEMBL top hitse value%identityAlignment
A0A5A7UFM2 Retrotransposon protein8.1e-8580.19Show/hide
Query:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN
        MIHESDLVCRQST+M+RRTFAILC L RNVAGLSSTEI+DV+EMVAMFLHVLAHDVKNR+IQ+EFVRSGETVSRHFNIVLLAVLRLYEELIKRPV VTSN
Subjt:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN

Query:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA
         NDQRWKCFE                          NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVL VCD KGDFVYVL+GWE SA DSRILRDA
Subjt:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA

Query:  ISQENGL
        ISQENGL
Subjt:  ISQENGL

A0A5A7UST8 Retrotransposon protein1.6e-8580.68Show/hide
Query:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN
        MIHESDLVCRQST+M+RRTFAILC L RNVAGLSSTEI+DV+EMVAMFLHVLAHDVKNR+IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV VTSN
Subjt:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN

Query:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA
         NDQRWKCFE                          NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVL VCDTKGDFVYVL+GWE SA DSRILRDA
Subjt:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA

Query:  ISQENGL
        IS+ENGL
Subjt:  ISQENGL

A0A5A7VH63 Retrotransposon protein6.2e-8580.19Show/hide
Query:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN
        MIHE DLVCRQST+M+RRTFAILC L RNVAGLSSTEI+DV+EMVAMFLHVLAHDVKNR+IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV VTSN
Subjt:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN

Query:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA
         NDQRWKCFE                          NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVL VCDTKGDFVYVL+GWE SA DSRILRDA
Subjt:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA

Query:  ISQENGL
        IS+ENGL
Subjt:  ISQENGL

A0A5D3D7X8 Retrotransposon protein1.6e-8580.68Show/hide
Query:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN
        MIHESDLVCRQST+M+RRTFAILC L RNVAGLSSTEI+DV+EMVAMFLHVLAHDVKNR+IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV VTSN
Subjt:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN

Query:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA
         NDQRWKCFE                          NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVL VCDTKGDFVYVL+GWE SA DSRILRDA
Subjt:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA

Query:  ISQENGL
        IS+ENGL
Subjt:  ISQENGL

A0A5D3DTQ4 Retrotransposon protein1.6e-8580.68Show/hide
Query:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN
        MIHESDLVCRQST+M+RRTFAILC L RNVAGLSSTEI+DV+EMVAMFLHVLAHDVKNR+IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV VTSN
Subjt:  MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSN

Query:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA
         NDQRWKCFE                          NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVL VCDTKGDFVYVL+GWE SA DSRILRDA
Subjt:  YNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA

Query:  ISQENGL
        IS+ENGL
Subjt:  ISQENGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein3.7e-1327.14Show/hide
Query:  IHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSNY
        + +    C Q  +M+   F  LC + +    L  T  I ++E VAMFL +  H+   R +   F R+ ETV R F  VL A   L  + I+ P       
Subjt:  IHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSNY

Query:  NDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA
          +R        ++VD           QR        +GA+DGT++ V V    +  +  R    + N++ +CD K  F Y+ +G   S  D+ +L+ A
Subjt:  NDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDA

AT5G28730.1 unknown protein1.6e-0826.6Show/hide
Query:  IHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSNY
        I+ +++ C+   +M+   F  LC +     GL S+  I +DE VA+FL + A +   R I   F  + ET+ R F+ VL A+ RL               
Subjt:  IHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSNY

Query:  NDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDAI
                      V+Y  P +   L + +   LQ+     D  Y          P      G  + NVL +CD    F Y   G   S  D+R+L  AI
Subjt:  NDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDAI

Query:  SQE
        S +
Subjt:  SQE

AT5G28950.1 unknown protein5.7e-1445.71Show/hide
Query:  QNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDAISQEN
        ++C+GA+D T+I   V     P+FR RKG+I+ N+L  C+   +F+YVLSGWE SA DS++L DA+++ +
Subjt:  QNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDAISQEN

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)4.1e-2029.65Show/hide
Query:  CRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSNYNDQRWKC
        C ++ +M++  F  LC L +    L  T  I ++  +A+FL ++ H+++ R +Q  F  SGET+SRHFN VL AV+                        
Subjt:  CRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSNYNDQRWKC

Query:  FEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDAISQENGL
             I  D+  P   S  ++      ++C+G +D  +I V V   ++  FR   G +  NVL        F YVL+GWE SA+D ++L  A+++ N L
Subjt:  FEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDAISQENGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCAGATGAATAGGCGAACATTCGCAATTCTATGCCGTTTACCTAGAAATGTGGCTGGTCTTTCTTCAACTGA
AATTATCGATGTTGACGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCATCATCCAACGGGAATTTGTACGGTCCGGTGAGACAGTATCTC
GACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCTGGTAACAAGTAACTATAATGATCAACGTTGGAAGTGTTTCGAG
GTGGGCATCATAGAAGTTGACTATAATTCACCTTTACGTACATCGCACTTAATTCAACGTGTTTGTTTCAACCTGCAGAACTGCCTTGGCGCGTTAGACGGGACGTACAT
AAAGGTCAACGTCCCCGCAGGAGATCGGCCTACATTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTGAGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCC
TCTCCGGTTGGGAAGAATCCGCAACAGACTCGCGGATCCTACGTGATGCGATTTCACAAGAAAATGGACTATAA
mRNA sequenceShow/hide mRNA sequence
ATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCAGATGAATAGGCGAACATTCGCAATTCTATGCCGTTTACCTAGAAATGTGGCTGGTCTTTCTTCAACTGA
AATTATCGATGTTGACGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCATCATCCAACGGGAATTTGTACGGTCCGGTGAGACAGTATCTC
GACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCTGGTAACAAGTAACTATAATGATCAACGTTGGAAGTGTTTCGAG
GTGGGCATCATAGAAGTTGACTATAATTCACCTTTACGTACATCGCACTTAATTCAACGTGTTTGTTTCAACCTGCAGAACTGCCTTGGCGCGTTAGACGGGACGTACAT
AAAGGTCAACGTCCCCGCAGGAGATCGGCCTACATTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTGAGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCC
TCTCCGGTTGGGAAGAATCCGCAACAGACTCGCGGATCCTACGTGATGCGATTTCACAAGAAAATGGACTATAA
Protein sequenceShow/hide protein sequence
MIHESDLVCRQSTQMNRRTFAILCRLPRNVAGLSSTEIIDVDEMVAMFLHVLAHDVKNRIIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVLVTSNYNDQRWKCFE
VGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLRVCDTKGDFVYVLSGWEESATDSRILRDAISQENGL