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Cmc04g0111861 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0111861
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonuclease T(2)
Genome locationCMiso1.1chr04:30895551..30895826
RNA-Seq ExpressionCmc04g0111861
SyntenyCmc04g0111861
Gene Ontology termsGO:0006401 - RNA catabolic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR001568 - Ribonuclease T2-like
IPR018188 - Ribonuclease T2, His active site 1
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAA10891.1 ribonuclease (RNase LC1) [Luffa aegyptiaca]2.8e-2866.29Show/hide
Query:  MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKVNWFQTS
        M   KR++V  VFVLTILFP+VKSQTFD+FW VQ WPPA+C+ Q GRCVG+G RSFTIHG+WPQKGG SV NC G +FDFTK++  +++
Subjt:  MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKVNWFQTS

XP_004147499.1 ribonuclease MC [Cucumis sativus]5.2e-3891.67Show/hide
Query:  MEKTKR-DVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKV
        MEKTK  DVVFFVFVLTILFPIVKSQTFD+FWFVQQWPPA+CTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNC+GN FDFTK+
Subjt:  MEKTKR-DVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKV

XP_008443402.1 PREDICTED: ribonuclease MC-like [Cucumis melo]1.3e-4198.8Show/hide
Query:  MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKV
        MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTK+
Subjt:  MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKV

XP_022155091.1 ribonuclease MC-like [Momordica charantia]1.3e-2865.17Show/hide
Query:  MEKTKRDVVF-FVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKVNWFQT
        M+ ++R++VF FV  +TI  PIVKSQTFD+FWFVQQWPPA+C+ Q GRCVG+G R+FTIHG+WPQKGG SV NC G  FDFTK++  +T
Subjt:  MEKTKRDVVF-FVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKVNWFQT

XP_038905534.1 ribonuclease MC-like [Benincasa hispida]1.6e-3483.13Show/hide
Query:  MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKV
        M  TKR++V  VF LTILFPIV+SQTFD+FWFVQQWPPA+C LQSGRCVGRGTRSFTIHGLWPQKGG SVTNC+GNSFDFTK+
Subjt:  MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKV

TrEMBL top hitse value%identityAlignment
A0A0A0LC37 Ribonuclease T(2)2.5e-3891.67Show/hide
Query:  MEKTKR-DVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKV
        MEKTK  DVVFFVFVLTILFPIVKSQTFD+FWFVQQWPPA+CTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNC+GN FDFTK+
Subjt:  MEKTKR-DVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKV

A0A1S3B8Q3 Ribonuclease T(2)6.4e-4298.8Show/hide
Query:  MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKV
        MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTK+
Subjt:  MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKV

A0A6J1CKH7 Ribonuclease T(2)2.4e-2868.24Show/hide
Query:  TKRDVV-FFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKVNWFQ
        +KR+VV  F   +TI FP+VKSQ FDNFWFVQQWPPA+C  Q GRCVG+G R+FT+HGLWPQKGG SV NCSG  FDFT+V+  Q
Subjt:  TKRDVV-FFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKVNWFQ

A0A6J1DQN7 ribonuclease MC-like6.2e-2965.17Show/hide
Query:  MEKTKRDVVF-FVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKVNWFQT
        M+ ++R++VF FV  +TI  PIVKSQTFD+FWFVQQWPPA+C+ Q GRCVG+G R+FTIHG+WPQKGG SV NC G  FDFTK++  +T
Subjt:  MEKTKRDVVF-FVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKVNWFQT

Q40115 Ribonuclease (RNase LC1)1.4e-2866.29Show/hide
Query:  MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKVNWFQTS
        M   KR++V  VFVLTILFP+VKSQTFD+FW VQ WPPA+C+ Q GRCVG+G RSFTIHG+WPQKGG SV NC G +FDFTK++  +++
Subjt:  MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKVNWFQTS

SwissProt top hitse value%identityAlignment
P23540 Ribonuclease MC2.1e-1862.5Show/hide
Query:  FDNFWFVQQWPPAICTLQ-SGRCVGRGTRSFTIHGLWPQKGGRSVTNC-SGNSFDFTKVNWFQT
        FD+FWFVQQWPPA+C+ Q SG C G G R+FTIHGLWPQ  G S+TNC  G+ FD TK++  Q+
Subjt:  FDNFWFVQQWPPAICTLQ-SGRCVGRGTRSFTIHGLWPQKGGRSVTNC-SGNSFDFTKVNWFQT

P42813 Ribonuclease 11.4e-0637.65Show/hide
Query:  LTILFPIV-----KSQTFDNFWFVQQWPPAICTLQSGRCV---GRGTRSFTIHGLWPQ-KGGRSVTNCSGNS-FDFTKVNWFQTS
        L ++ P V      S+ FD F+FVQQWP + C  Q   C    G+    F IHGLWP  K G   +NC  +  FD + ++   TS
Subjt:  LTILFPIV-----KSQTFDNFWFVQQWPPAICTLQSGRCV---GRGTRSFTIHGLWPQ-KGGRSVTNCSGNS-FDFTKVNWFQTS

P42815 Ribonuclease 31.1e-0641.46Show/hide
Query:  FFVFVLTILFPIVKS--QTFDNFWFVQQWPPAICTLQSGRC---VGRGTRSFTIHGLWPQ-KGGRSVTNCSGNS-FDFTKVN
        FF+F+L +    V+S  Q FD F+FV QWP A C  +   C    G+    F IHGLWP  K G    NC+ +S FD  +V+
Subjt:  FFVFVLTILFPIVKS--QTFDNFWFVQQWPPAICTLQSGRC---VGRGTRSFTIHGLWPQ-KGGRSVTNCSGNS-FDFTKVN

P80022 Extracellular ribonuclease LE7.1e-0641.38Show/hide
Query:  SQTFDNFWFVQQWPPAICTLQSGRC---VGRGTRSFTIHGLWPQKG-GRSVTNCSGNS
        ++ FD F+FVQQWP + C  +   C    G+    F IHGLWP    G   +NC  NS
Subjt:  SQTFDNFWFVQQWPPAICTLQSGRC---VGRGTRSFTIHGLWPQKG-GRSVTNCSGNS

P80196 Intracellular ribonuclease LX4.4e-0838.27Show/hide
Query:  MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRC---VGRGTRSFTIHGLWPQ-KGGRSVTNCSGNS
        M+  K+ ++  + V  +L   V SQ FD F+FVQQWP + C  +   C    G+    F+IHGLWP  K G+   NC   S
Subjt:  MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRC---VGRGTRSFTIHGLWPQ-KGGRSVTNCSGNS

Arabidopsis top hitse value%identityAlignment
AT1G14210.1 Ribonuclease T2 family protein1.2e-0534.48Show/hide
Query:  RDVVFFVFVLTILFPIVKSQT---FDNFWFVQQWPPAICTLQSGRC---VGRGTRSFTIHGLWPQ-KGGRSVTNC-SGNSFDFTKVN
        R ++    ++     +  SQT   F+ F++V  WP AIC  Q G C    G     F IHGLWPQ   G     C   N FD +K++
Subjt:  RDVVFFVFVLTILFPIVKSQT---FDNFWFVQQWPPAICTLQSGRC---VGRGTRSFTIHGLWPQ-KGGRSVTNC-SGNSFDFTKVN

AT1G14220.1 Ribonuclease T2 family protein1.9e-0636.14Show/hide
Query:  DVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCV---GRGTRSFTIHGLWPQ-KGGRSVTNCSGNS-FDFTKVN
        +V+  + V   LF     + FD F+FV QWP A C      C    G+    F IHGLWP   GG   +NC  +S FD ++++
Subjt:  DVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCV---GRGTRSFTIHGLWPQ-KGGRSVTNCSGNS-FDFTKVN

AT1G26820.1 ribonuclease 37.8e-0841.46Show/hide
Query:  FFVFVLTILFPIVKS--QTFDNFWFVQQWPPAICTLQSGRC---VGRGTRSFTIHGLWPQ-KGGRSVTNCSGNS-FDFTKVN
        FF+F+L +    V+S  Q FD F+FV QWP A C  +   C    G+    F IHGLWP  K G    NC+ +S FD  +V+
Subjt:  FFVFVLTILFPIVKS--QTFDNFWFVQQWPPAICTLQSGRC---VGRGTRSFTIHGLWPQ-KGGRSVTNCSGNS-FDFTKVN

AT2G02990.1 ribonuclease 11.0e-0737.65Show/hide
Query:  LTILFPIV-----KSQTFDNFWFVQQWPPAICTLQSGRCV---GRGTRSFTIHGLWPQ-KGGRSVTNCSGNS-FDFTKVNWFQTS
        L ++ P V      S+ FD F+FVQQWP + C  Q   C    G+    F IHGLWP  K G   +NC  +  FD + ++   TS
Subjt:  LTILFPIV-----KSQTFDNFWFVQQWPPAICTLQSGRCV---GRGTRSFTIHGLWPQ-KGGRSVTNCSGNS-FDFTKVNWFQTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAAACAAAGAGAGATGTTGTGTTCTTCGTATTTGTCTTAACCATTTTGTTTCCTATCGTTAAATCGCAAACTTTCGATAATTTTTGGTTTGTTCAACAA
TGGCCACCAGCTATTTGTACTTTACAATCAGGGCGATGTGTAGGACGAGGGACTCGATCCTTCACAATCCATGGTTTGTGGCCTCAAAAGGGAGGAAGATCTGTG
ACTAATTGTAGTGGCAATTCATTTGACTTCACTAAGGTAAATTGGTTTCAAACATCCAAAATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAAACAAAGAGAGATGTTGTGTTCTTCGTATTTGTCTTAACCATTTTGTTTCCTATCGTTAAATCGCAAACTTTCGATAATTTTTGGTTTGTTCAACAA
TGGCCACCAGCTATTTGTACTTTACAATCAGGGCGATGTGTAGGACGAGGGACTCGATCCTTCACAATCCATGGTTTGTGGCCTCAAAAGGGAGGAAGATCTGTG
ACTAATTGTAGTGGCAATTCATTTGACTTCACTAAGGTAAATTGGTTTCAAACATCCAAAATATAA
Protein sequenceShow/hide protein sequence
MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKVNWFQTSKI