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Cmc04g0113201 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0113201
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionSigma factor binding protein 2
Genome locationCMiso1.1chr04:31826698..31827877
RNA-Seq ExpressionCmc04g0113201
SyntenyCmc04g0113201
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651179.1 hypothetical protein Csa_002123, partial [Cucumis sativus]4.7e-3887.13Show/hide
Query:  MRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIVM-NDLEKKVVADQGEDDEQELLIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINP
        MRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEI+  +D+EKKVVA +GE+DEQELLIDSSCDDDF RSS+ESLEDILRRDVMENFGAISTSL NP
Subjt:  MRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIVM-NDLEKKVVADQGEDDEQELLIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINP

Query:  L
        L
Subjt:  L

XP_008443611.1 PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo]3.6e-70100Show/hide
Query:  MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQEL
        MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQEL
Subjt:  MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQEL

Query:  LIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPLV
        LIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPLV
Subjt:  LIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPLV

XP_011652185.1 uncharacterized protein LOC105434994 [Cucumis sativus]9.2e-5887.5Show/hide
Query:  MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIVM-NDLEKKVVADQGEDDEQ
        MDR+LLVSELTTT  K  KTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEI+  +D+EKKVVA +GE+DEQ
Subjt:  MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIVM-NDLEKKVVADQGEDDEQ

Query:  ELLIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPLV
        ELLIDSSCDDDF RSS+ESLEDILRRDVMENFGAISTSL NPLV
Subjt:  ELLIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPLV

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]9.3e-2655.63Show/hide
Query:  MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQEL
        MDR L+VSE+       KK TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK     +G+DDE+  
Subjt:  MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQEL

Query:  L----IDSSCDDDFWRSSFESLEDILRRD-VMENFGAISTSL
        L         +DDF  S +ES E++L R+ +MENF   S S+
Subjt:  L----IDSSCDDDFWRSSFESLEDILRRD-VMENFGAISTSL

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]1.1e-1545.16Show/hide
Query:  KKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLI--------DSSCDD
        +K+  RKRK C+   QPLKVVYISNPMRV  SA+EFR LVQ+LTG+DA        +P S  +   +   + + D  +DD+Q+LL+        DSS  D
Subjt:  KKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLI--------DSSCDD

Query:  DFWRSSFESLEDILRRDVMENFGA
        DF   S+ESLE I  RD+++   A
Subjt:  DFWRSSFESLEDILRRDVMENFGA

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein4.4e-5887.5Show/hide
Query:  MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIVM-NDLEKKVVADQGEDDEQ
        MDR+LLVSELTTT  K  KTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEI+  +D+EKKVVA +GE+DEQ
Subjt:  MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIVM-NDLEKKVVADQGEDDEQ

Query:  ELLIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPLV
        ELLIDSSCDDDF RSS+ESLEDILRRDVMENFGAISTSL NPLV
Subjt:  ELLIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPLV

A0A1S3B8H6 uncharacterized protein LOC1034871671.7e-70100Show/hide
Query:  MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQEL
        MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQEL
Subjt:  MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQEL

Query:  LIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPLV
        LIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPLV
Subjt:  LIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPLV

A0A5D3DPQ4 Sigma factor binding protein 21.7e-70100Show/hide
Query:  MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQEL
        MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQEL
Subjt:  MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQEL

Query:  LIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPLV
        LIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPLV
Subjt:  LIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPLV

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like4.5e-2655.63Show/hide
Query:  MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQEL
        MDR L+VSE+       KK TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK     +G+DDE+  
Subjt:  MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQEL

Query:  L----IDSSCDDDFWRSSFESLEDILRRD-VMENFGAISTSL
        L         +DDF  S +ES E++L R+ +MENF   S S+
Subjt:  L----IDSSCDDDFWRSSFESLEDILRRD-VMENFGAISTSL

A0A6J1FKR4 uncharacterized protein LOC1114466392.3e-1445.9Show/hide
Query:  KKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLI------DSSCDDDF
        +K+  R RK C+   QPLKVVYISNPMRV  SA+EFR LVQELTG+DA      KF P++    +   E  V   Q +DD+++LL+      DSS  D F
Subjt:  KKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLI------DSSCDDDF

Query:  WRSSFESLEDILRRDVMENFGA
           S+ES E I  RD+++   A
Subjt:  WRSSFESLEDILRRDVMENFGA

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic1.0e-0640Show/hide
Query:  TLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPSKFYPAS----CEIVMN
        TLL+++  ++++  +   ++++      +P+KV YISNPMRV T  S+FR LVQELTG+DA    P P+ F        CE  MN
Subjt:  TLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPSKFYPAS----CEIVMN

Q9LDH1 Sigma factor binding protein 1, chloroplastic2.4e-0850.65Show/hide
Query:  LTTTTTKKKKTT--------RKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCE
        LTTT+  KKK +        +K+K+   NK P+KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  S +
Subjt:  LTTTTTKKKKTT--------RKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCE

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein7.1e-0840Show/hide
Query:  TLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPSKFYPAS----CEIVMN
        TLL+++  ++++  +   ++++      +P+KV YISNPMRV T  S+FR LVQELTG+DA    P P+ F        CE  MN
Subjt:  TLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPSKFYPAS----CEIVMN

AT3G56710.1 sigma factor binding protein 11.7e-0950.65Show/hide
Query:  LTTTTTKKKKTT--------RKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCE
        LTTT+  KKK +        +K+K+   NK P+KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  S +
Subjt:  LTTTTTKKKKTT--------RKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGAACTTTACTGGTAAGTGAGCTGACGACGACGACGACGAAGAAGAAGAAAACAACACGGAAAAGGAAATCATGCGAAGAGAATAAGCAACCCCTTAAAGTTGT
ATACATATCCAACCCGATGAGGGTTCACACGAGCGCATCTGAATTTAGAGCCTTAGTCCAAGAACTAACGGGGCGAGATGCCGAGTTTCCCGACCCGAGCAAGTTCTATC
CAGCGTCGTGCGAGATCGTCATGAATGATCTTGAGAAGAAAGTAGTAGCAGATCAAGGAGAGGACGATGAGCAAGAACTGTTAATTGATTCGAGCTGTGATGATGACTTT
TGGAGGAGTTCATTTGAAAGCTTGGAGGATATTTTGAGGAGAGATGTGATGGAGAACTTTGGAGCCATCTCTACATCTTTAATCAATCCTTTGGTTTAG
mRNA sequenceShow/hide mRNA sequence
CCCTCTTCCTCTTTTTTTCTTTTCTTCTTTTGAAATATATAATCTTTAGTTTAATATTTGTTAAAAATATTCATTTCATCTTTCCAAAATTGTGTTGTATTATTATATTA
TACATTACAAAACCTTCGAAATTTGTAATAGAAGACAGGAGTACTTAATTTGTATATTTTTGCATAATTCAGAATATTTTTATTTTTATTTATGCGAAAAATAAAAGGAT
AAAATTGTAACTTTTTGATAGAATACAATATTTTAAACAAAATACAAAATATGTCTTTGTAGTCTAACCTTTTTTTCCTCCTTTGCTCTCAAAGAAGCCTCCTACCTACA
ATTTCGCAGCCACCAAACATTTTTCTTTCCCCATAAATTAACCCTCCAAAACTGCCTCTTTACGAACCCGAACTCGAAAGAAAAAAGACGAAAAAATGGATCGAACTTTA
CTGGTAAGTGAGCTGACGACGACGACGACGAAGAAGAAGAAAACAACACGGAAAAGGAAATCATGCGAAGAGAATAAGCAACCCCTTAAAGTTGTATACATATCCAACCC
GATGAGGGTTCACACGAGCGCATCTGAATTTAGAGCCTTAGTCCAAGAACTAACGGGGCGAGATGCCGAGTTTCCCGACCCGAGCAAGTTCTATCCAGCGTCGTGCGAGA
TCGTCATGAATGATCTTGAGAAGAAAGTAGTAGCAGATCAAGGAGAGGACGATGAGCAAGAACTGTTAATTGATTCGAGCTGTGATGATGACTTTTGGAGGAGTTCATTT
GAAAGCTTGGAGGATATTTTGAGGAGAGATGTGATGGAGAACTTTGGAGCCATCTCTACATCTTTAATCAATCCTTTGGTTTAGTATAATAATTGAGGTTTCATCTTTTA
TTCTCAGCTTTCATCTAATTTTGCTATGATCTTTTCAAGCCTGTCCAAAAATAAATGAAATGCACAATAATCCTGTAATGTGTTTAATGATTCTCTTAGCTAACTTCATA
ATTTCTAACCCTAAATCATATCCCCTTGAACTCTGCAGCTCTAATCTTTTCTTCTTCCAAACAAAAAACTCTTTTTTCATTTTCAATGTCGTAATATACTTGAACCCTGA
ATATTCACTTTTGAATCACTTTAAACTCTAATTTTGTTTGAGAATCGTCCATACATCTACTCTAATTTTTTATTTTATAA
Protein sequenceShow/hide protein sequence
MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLIDSSCDDDF
WRSSFESLEDILRRDVMENFGAISTSLINPLV