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Cmc04g0113281 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0113281
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPectin lyase-like superfamily protein
Genome locationCMiso1.1chr04:31886249..31886515
RNA-Seq ExpressionCmc04g0113281
SyntenyCmc04g0113281
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045593.1 exopolygalacturonase-like [Cucumis melo var. makuwa]8.3e-3381.61Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        SLDSKNYHINLLGCKNLTFDHVTIT P NSPN DG H+SSS++INILNTNI  GD+CISVGDTNKQ+VIS++TC  GHGISIG LGK
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

KAA0045594.1 exopolygalacturonase-like [Cucumis melo var. makuwa]8.3e-3381.61Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        SLDSKNYHINLLGCKNLTFDHVTIT P NSPN DG H+SSS++INILNTNI  GD+CISVGDTNKQ+VIS++TC  GHGISIG LGK
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

KAA0045610.1 exopolygalacturonase-like [Cucumis melo var. makuwa]8.3e-3381.61Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        SLDSKNYHINLLGCKNLTFDHVTIT P NSPN DG H+SSS++INILNTNI  GD+CISVGDTNKQ+VIS++TC  GHGISIG LGK
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

XP_011652893.2 exopolygalacturonase [Cucumis sativus]4.8e-3382.76Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        SLDSKNYHINLLGCKNLT DHVTIT PENSPN DG H+SSS++INILNTNI  GD+CISVGDTNKQIVIS++TC  GHGISIG LGK
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

XP_016903689.1 PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]8.3e-3381.61Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        SLDSKNYHINLLGCKNLTFDHVTIT P NSPN DG H+SSS++INILNTNI  GD+CISVGDTNKQ+VIS++TC  GHGISIG LGK
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

TrEMBL top hitse value%identityAlignment
A0A0A0LX75 Uncharacterized protein4.7e-3483.91Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        SLDSKNYHINLLGCKNLTFDHVTIT PENSPN DG H+SSS++INILNTNI  GD+CISVGDTNKQIVIS++TC  GHGISIG LGK
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

A0A5A7TR51 Exopolygalacturonase-like4.0e-3381.61Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        SLDSKNYHINLLGCKNLTFDHVTIT P NSPN DG H+SSS++INILNTNI  GD+CISVGDTNKQ+VIS++TC  GHGISIG LGK
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

A0A5A7TRZ0 Exopolygalacturonase-like4.0e-3381.61Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        SLDSKNYHINLLGCKNLTFDHVTIT P NSPN DG H+SSS++INILNTNI  GD+CISVGDTNKQ+VIS++TC  GHGISIG LGK
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

A0A5D3BWP4 Exopolygalacturonase-like4.0e-3381.61Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        SLDSKNYHINLLGCKNLTFDHVTIT P NSPN DG H+SSS++INILNTNI  GD+CISVGDTNKQ+VIS++TC  GHGISIG LGK
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

A0A5D3DYI3 Exopolygalacturonase-like4.0e-3381.61Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        SLDSKNYHINLLGCKNLTFDHVTIT P NSPN DG H+SSS++INILNTNI  GD+CISVGDTNKQ+VIS++TC  GHGISIG LGK
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)4.7e-2356.32Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        +LDSKN+H+N++GCKNLTF+   I+  E S N DG H+  S  +NI+NT I  GD+CIS+GD +K I I+NITC  GHGIS+G LG+
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

Q05967 Polygalacturonase1.2e-2152.33Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLG
        +LDSK++H+N+  CKNLTF    ++ P NSPN DG H+S S  +NI ++N + GD+CISVGD  +Q+ I+ +TC  GHGIS+G LG
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLG

Q39766 Polygalacturonase2.0e-2154.02Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        S DSK +HIN+  CKN+T + + I  P+ SPN DG HM  S+ +NI+ ++I  GD+CIS+GD  K +VI  ITC  GHGISIG LGK
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

Q39786 Polygalacturonase2.0e-2154.02Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        S DSK +HIN+  CKN+T + + I  P+ SPN DG HM  S+ +NI+ ++I  GD+CIS+GD  K +VI  ITC  GHGISIG LGK
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

Q40312 Polygalacturonase8.6e-2556.32Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        S DSKN+H+ + GCKN+TFD  TIT P +SPN DG HM  S ++ ILNTNI  GD+C+S+GD +KQI +  + C  GHG+S+G LGK
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

Arabidopsis top hitse value%identityAlignment
AT3G07820.1 Pectin lyase-like superfamily protein1.1e-2251.72Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        S+D+KN+HIN+LG KN+T +++ I  PE+SPN DG H+  S  + ILN+ I+ GD+CISVGD  K + +  +TC  GHGIS+G LG+
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

AT3G07830.1 Pectin lyase-like superfamily protein1.1e-2249.43Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        S+D+KN+HIN++G KN+TFD+V I  P  SPN DG H+  S  ++I+N+ I+ GD+C+SVGD    +++ N+ C  GHGIS+G LG+
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

AT3G07840.1 Pectin lyase-like superfamily protein1.7e-2352.87Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        S+D+KN+HIN+LG KN+TFD+V +  P  SPN DG H+  S+ + ILN+ I  GD+CISVGD  K + + N+ C  GHGIS+G LG+
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

AT3G59850.1 Pectin lyase-like superfamily protein1.2e-1845.98Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        SL+S+ +H+ + GC N+  D V ++   NSPN DG H+ SS  ++ILN+ I+ GD+C+S+G     + I N+ C  GHGISIG LGK
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK

AT5G48140.1 Pectin lyase-like superfamily protein5.4e-2251.72Show/hide
Query:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK
        SLD+K++HIN++G KN+TF+ V I  P  SPN DG H+  S  I I+N+ I+ GD+C+SVGD  K +++  +TC  GHGISIG LG+
Subjt:  SLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTGGATAGCAAGAATTATCATATTAATCTTTTGGGTTGTAAGAATCTTACCTTTGACCACGTGACAATTACTACACCAGAGAACAGTCCCAACATCGATGGAAC
TCACATGAGTAGTTCAAAGGAGATTAACATTCTCAATACCAATATCACAGTCGGAGATAATTGTATATCGGTGGGAGATACCAACAAACAGATAGTTATTAGCAATATTA
CTTGCGAATCGGGGCATGGAATTAGCATAGGATATTTGGGAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATTGGATAGCAAGAATTATCATATTAATCTTTTGGGTTGTAAGAATCTTACCTTTGACCACGTGACAATTACTACACCAGAGAACAGTCCCAACATCGATGGAAC
TCACATGAGTAGTTCAAAGGAGATTAACATTCTCAATACCAATATCACAGTCGGAGATAATTGTATATCGGTGGGAGATACCAACAAACAGATAGTTATTAGCAATATTA
CTTGCGAATCGGGGCATGGAATTAGCATAGGATATTTGGGAAAATAG
Protein sequenceShow/hide protein sequence
MSLDSKNYHINLLGCKNLTFDHVTITTPENSPNIDGTHMSSSKEINILNTNITVGDNCISVGDTNKQIVISNITCESGHGISIGYLGK