; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0115101 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0115101
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionserine/arginine-rich SC35-like splicing factor SCL33
Genome locationCMiso1.1chr04:33164446..33167748
RNA-Seq ExpressionCmc04g0115101
SyntenyCmc04g0115101
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651124.1 hypothetical protein Csa_000954 [Cucumis sativus]8.9e-36100Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

XP_011652066.1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucumis sativus]8.9e-36100Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

XP_011652068.1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucumis sativus]8.9e-36100Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

XP_031739396.1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucumis sativus]8.9e-36100Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

XP_031739397.1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucumis sativus]8.9e-36100Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

TrEMBL top hitse value%identityAlignment
A0A0A0LGW4 RRM domain-containing protein4.3e-36100Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

A0A1S3B7U0 serine/arginine-rich SC35-like splicing factor SCL332.1e-3598.67Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGRSYSYSPSPPRSYGRRYRSPSPR RGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

A0A5A7TQD2 Serine/arginine-rich SC35-like splicing factor SCL33 isoform X12.1e-3598.67Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGRSYSYSPSPPRSYGRRYRSPSPR RGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

A0A6J1DCY5 serine/arginine-rich SC35-like splicing factor SCL336.9e-3496Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGRSYSYSPSPPRSYGRR+RSPSPR RGGR RDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

A0A6J1G9Y1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X31.7e-3294.67Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGRSYSYSPSPPRSYGRR RS SPRG GGR RDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

SwissProt top hitse value%identityAlignment
O75494 Serine/arginine-rich splicing factor 105.3e-0757.89Show/hide
Query:  TSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYS
        TSL VRN+  D R EDLR  FGR+GP+ D+Y+P D+Y+
Subjt:  TSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYS

Q1PDV2 Serine/arginine-rich SC35-like splicing factor SCL281.6e-1153.41Show/hide
Query:  RGRSYSYSPSPPRSYGRRYRSPSPRGRGG----RRRDLPTS----------LLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        R RS SYSP P      R RSP PR R G    R R+ P+S          LL+RNL  D RP DLR  F RFGPLKDIYLPR+YY+G
Subjt:  RGRSYSYSPSPPRSYGRRYRSPSPRGRGG----RRRDLPTS----------LLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

Q8L3X8 Serine/arginine-rich SC35-like splicing factor SCL302.6e-1452.94Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSP----------RGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MR  S  Y   P R YG R RSP P           G GGRR     SLLVRN+  DCRPE+LR  F RFGP++D+Y+PRDYYSG
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSP----------RGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

Q9LHP2 Serine/arginine-rich SC35-like splicing factor SCL30A1.5e-2577.92Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR--GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGR  SY+PSPPR YGRR RSPSPRGR  G R  DLPTSLLVRNLRHDCR EDLR  F +FGP+KDIYLPRDYY+G
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR--GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

Q9SEU4 Serine/arginine-rich SC35-like splicing factor SCL332.7e-2781.58Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGR  SY+PSPPR YGRR RSPSPRGR GGR RDLPTSLLVRNLRHDCR EDLR  F +FGP+KDIYLPRDYY+G
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

Arabidopsis top hitse value%identityAlignment
AT1G55310.1 SC35-like splicing factor 331.9e-2881.58Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGR  SY+PSPPR YGRR RSPSPRGR GGR RDLPTSLLVRNLRHDCR EDLR  F +FGP+KDIYLPRDYY+G
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

AT1G55310.2 SC35-like splicing factor 331.9e-2881.58Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGR  SY+PSPPR YGRR RSPSPRGR GGR RDLPTSLLVRNLRHDCR EDLR  F +FGP+KDIYLPRDYY+G
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

AT1G55310.3 SC35-like splicing factor 331.9e-2881.58Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGR  SY+PSPPR YGRR RSPSPRGR GGR RDLPTSLLVRNLRHDCR EDLR  F +FGP+KDIYLPRDYY+G
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

AT3G13570.1 SC35-like splicing factor 30A1.1e-2677.92Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR--GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MRGR  SY+PSPPR YGRR RSPSPRGR  G R  DLPTSLLVRNLRHDCR EDLR  F +FGP+KDIYLPRDYY+G
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR--GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG

AT3G55460.1 SC35-like splicing factor 301.9e-1552.94Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSP----------RGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG
        MR  S  Y   P R YG R RSP P           G GGRR     SLLVRN+  DCRPE+LR  F RFGP++D+Y+PRDYYSG
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSP----------RGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGTAGAAGTTACAGTTACAGTCCATCACCACCAAGAAGTTATGGCAGGAGATATCGTAGTCCTAGTCCAAGGGGTCGTGGAGGTCGTAGAAGGGACCTGCCAAC
AAGTCTTTTGGTTAGGAACTTGAGGCACGACTGCAGGCCAGAGGACCTACGTGGATTATTTGGGCGGTTTGGTCCTCTTAAGGACATTTACTTGCCACGAGATTATTATT
CTGGGTAG
mRNA sequenceShow/hide mRNA sequence
TCCAACAATTTTGCTCTTCCAGCCAGCTTGAACGAGGCGCCTCCGTTTGCTTCATCGGTTCTCCGATTCTCAGGAAATCGAAAATGAGAGGTAGAAGTTACAGTTACAGT
CCATCACCACCAAGAAGTTATGGCAGGAGATATCGTAGTCCTAGTCCAAGGGGTCGTGGAGGTCGTAGAAGGGACCTGCCAACAAGTCTTTTGGTTAGGAACTTGAGGCA
CGACTGCAGGCCAGAGGACCTACGTGGATTATTTGGGCGGTTTGGTCCTCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGGTAGGGTACTTTGGAAGATTGTT
ATATTGATTTTCTATGCATTTGGTGCGTATGCATGTATGGATGTTTTTCCTGGATGTTTTAACTCATTTTAGTCCTTTAGTTTTGGACGCATCTGATCTACTTTACATAT
TTGTAAATATGTTTTTATTGATGGTTGTTCCTAGTGATTGCTTAATGGTGTGGAAATGGTCATCTGTTTTCAATTATTTGGTTTTCCAATAATAACATACAATCTGTTTA
TGGAGTTTGGTTGTTTTTATTGAAAGTACTAGTGTTGAAGACAACCAATGAAGTAATAAGAGTATCTTGTGGAAGACAAGAAGCAAGTAATTTGTTTATTGTGTTGAAGA
CATTCAAGTAAGTTCTGATGACTTAATGTGTACATGAAGATTCGGTGGAAGTTGGGTTAGAGTACATTGAGAAGAAGTTCAAGTCTTGAAGAATTTCATCTCAATTTTTT
CTTAGCCACTCAGAAGAGAACCACGTGGTTTTGGATTCGTTCAGTTCGTTGATGCCGCTGATGCTGCTGATGCCAAGTATGAATTGGATGGCGAAGTTCTCCTGGGTCAT
GAACTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCTGAAGAGATGAGAGCAAGAGACTCATCAAGGGGTCGGTCCTACAGTTACAGCCGCCGGCATTCACCGTT
GCGATATTCACGATCACCGCACTATGATCGAAAATATTCCCGTAGTCCTGAGTATTATTCCCCTGCACGGTCCAGACGATATTCAAGGTCGCCTAGGGGCCGCAGATACA
GGGAGCAATCCTACTTAAGGTCACCATATGATCCAAGGGGCCGCAGTTACAGCCGAAGCAGGAGCCGTAGCTATAGCCGAAGTTATTCTAGGTAAGTAAAAGTACTTAAT
CGAAGTTTTAAGAAGAAGCCAGCCAGCTGATGTTTCTGAAGACCCAGAAACTATGATTTTAATTATGTTTGGAATTTGGATTTCGGAGGCTTTTGTATATGTCTTCTTAG
AAAATTCTTGTTTTAGAGATGACTGATTTTTATGCTCTTAGTTGAACAAATTTATGAGCTTTATGGCTGTTTTCTTCATGTAAAATGAAACTTTGGAATTTTAGACTTTT
CTCTAAAATACTCCCCAACATTTCTATCAAAGATCATGTCTTAATGTTTGTCTGCTAGTGAGATTAACATTGAGACTGTATGCTAAAA
Protein sequenceShow/hide protein sequence
MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG