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Cmc04g0116451 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0116451
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionreplication protein A 14 kDa subunit B
Genome locationCMiso1.1chr04:34028229..34031616
RNA-Seq ExpressionCmc04g0116451
SyntenyCmc04g0116451
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0016020 - membrane (cellular component)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149201.1 replication protein A 14 kDa subunit B [Cucumis sativus]4.6e-4995.28Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSE NGV+ GKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC FANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE

Query:  FKHLFI
        FK LFI
Subjt:  FKHLFI

XP_008442847.1 PREDICTED: replication protein A 14 kDa subunit B [Cucumis melo]2.6e-52100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE

Query:  FKHLFI
        FKHLFI
Subjt:  FKHLFI

XP_022983164.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]6.7e-4893.4Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE
        MDTSNPSVFVNAELLR+YVGRRVRAVIQV SEGNGVI GKSTDDNQITVKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE

Query:  FKHLFI
        FK LF+
Subjt:  FKHLFI

XP_023528146.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]3.9e-4894.34Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI GKSTDDNQITVKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE

Query:  FKHLFI
        FK LF+
Subjt:  FKHLFI

XP_038905423.1 replication protein A 14 kDa subunit B [Benincasa hispida]3.8e-5198.11Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVI GKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE

Query:  FKHLFI
        FKHLFI
Subjt:  FKHLFI

TrEMBL top hitse value%identityAlignment
A0A0A0LGP0 Uncharacterized protein2.2e-4995.28Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSE NGV+ GKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC FANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE

Query:  FKHLFI
        FK LFI
Subjt:  FKHLFI

A0A1S3B7E2 replication protein A 14 kDa subunit B1.3e-52100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE

Query:  FKHLFI
        FKHLFI
Subjt:  FKHLFI

A0A6J1FQS1 replication protein A 14 kDa subunit B-like7.2e-4893.4Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI GKSTD+NQI VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQ ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE

Query:  FKHLFI
        FK LFI
Subjt:  FKHLFI

A0A6J1J6J3 replication protein A 14 kDa subunit B-like3.2e-4893.4Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE
        MDTSNPSVFVNAELLR+YVGRRVRAVIQV SEGNGVI GKSTDDNQITVKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE

Query:  FKHLFI
        FK LF+
Subjt:  FKHLFI

A0A6J1L034 replication protein A 14 kDa subunit B-like7.2e-4893.4Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI GKSTD+NQI VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQ ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE

Query:  FKHLFI
        FK LFI
Subjt:  FKHLFI

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B6.1e-3665.09Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE
        MDTS+P+ FVN  LLR Y+G++VRAVIQV+    G ++GKSTDD QI VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+ ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE

Query:  FKHLFI
        F+HLFI
Subjt:  FKHLFI

Q9LXK1 Replication protein A 14 kDa subunit A4.8e-3361.68Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G ++GKSTDD QI V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+ ANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANG

Query:  EFKHLFI
        EFKHLFI
Subjt:  EFKHLFI

Q9SDK9 Replication protein A 14 kDa subunit2.1e-2851.89Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE
        MDTS P+ FVN E+L+++VGRRVR V+Q   E  G+++G+STD +Q+T+KG+   P+S +VE+IGIA+ +++IRA+V T+FG++FD + FN LC+ ANG+
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE

Query:  FKHLFI
         K LF+
Subjt:  FKHLFI

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein3.4e-3461.68Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G ++GKSTDD QI V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+ ANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANG

Query:  EFKHLFI
        EFKHLFI
Subjt:  EFKHLFI

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein3.4e-3461.68Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G ++GKSTDD QI V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+ ANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANG

Query:  EFKHLFI
        EFKHLFI
Subjt:  EFKHLFI

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein4.3e-3765.09Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE
        MDTS+P+ FVN  LLR Y+G++VRAVIQV+    G ++GKSTDD QI VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+ ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGE

Query:  FKHLFI
        F+HLFI
Subjt:  FKHLFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATGTTTATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCT
GAAGGCAATGGAGTCATACTTGGTAAATCAACGGATGACAACCAGATCACTGTCAAAGGTTCCCCGCCCTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGAATT
GCTGATACTGACAAATCCATTCGAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGATACATCTACCTTCAATCAACTATGCCAGTTTGCTAATGGGGAGTTC
AAACACTTGTTTATCTGA
mRNA sequenceShow/hide mRNA sequence
GTTAAAACTAGACTCATTACATAAGGTGTCGATTAATTTTTACTAATTCATATTCATTTTAACTTTTTTTTTTTTACATTAAGTTCTCTTTTCTCATAGTTTTTG
TTTTACCCTTTTTATAATATTGAAAAAGAAAAATGTATATGAAAAATCTGAAAATGATACCGTTCGTTGATTGCTCGTGCGAGCACGTGTAGACCGTCGGATGAA
GCAGACTATCTGTCTATAAATACCTATCTTCTCATTTCGTTTTTAGTCGAAGCTTCAATTTTGCCTCTTTCAAAAACCGCGCGCTTTTTCGATCGATTCGATTGC
CATTTCCGGCGAACTCTCCGATCGCTGAATCAGGAATATGGATATGTTTATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGT
TGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCTGAAGGCAATGGAGTCATACTTGGTAAATCAACGGATGACAACCAGATCACTGTCAAAGGTTCCCCGCC
CTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGAATTGCTGATACTGACAAATCCATTCGAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGATACATCTAC
CTTCAATCAACTATGCCAGTTTGCTAATGGGGAGTTCAAACACTTGTTTATCTGATTTTCAAGCCAGACATTCTTTAGCAAGCTCCCGTGACACGCCAAGTCGCC
AATGTTCTCTTCATGTTCTTCTGAAAGCATCCGAGATTTATCGTTCATACGGTATTGAACTTTTCAGGTAAGGGATGTATAAAATTTGAATATGCAAAGTATGTT
TGTGTTAGAATATACTAGAATGAACATTGCTTCAAAATGATAAAAAGAATTATATTTTAATCAATTTCGTTTGTAGTTTTTTAGGTTAGTAAGCCTTTGTGAATG
CAAATAAACTGAAAACCGATGATTACAAACTGACGAACTATAATCTTTAACTGAAGCTCAATGTTATGAAAAACATAATCTAGAGAATATATGCCAAC
Protein sequenceShow/hide protein sequence
MDMFMDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEF
KHLFI