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Cmc04g0116991 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0116991
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTRASH domain-containing protein
Genome locationCMiso1.1chr04:34368869..34370223
RNA-Seq ExpressionCmc04g0116991
SyntenyCmc04g0116991
Gene Ontology termsNA
InterPro domainsIPR000988 - Ribosomal protein L24e-related


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043915.1 putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa]4.1e-4398.91Show/hide
Query:  MKGCDTGKHEFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        MKGCDTGKHEFERKRN+PERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
Subjt:  MKGCDTGKHEFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE

KAG6596547.1 putative ribosome biogenesis protein RLP24, partial [Cucurbita argyrosperma subsp. sororia]1.7e-2064.65Show/hide
Query:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRN+PERYDRN  EE L+AIKKIDKV A RE+RHIA RM+GKK K L+E                 LKED SLTLPKI+VKVV SQ E NQPMEE
Subjt:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE

XP_022976358.1 probable ribosome biogenesis protein RLP24 [Cucurbita maxima]2.2e-2065.66Show/hide
Query:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEE----------------DLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRN+PERYDRN  EE L+AIKKIDKV A RESRHIA RM+GKKAK L E                 LKED SLTLPKIKV V PSQ E NQ MEE
Subjt:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEE----------------DLKEDRSLTLPKIKVKVVPSQGEHNQPMEE

XP_038905540.1 probable ribosome biogenesis protein RLP24 isoform X1 [Benincasa hispida]7.6e-2167.68Show/hide
Query:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEE----------------DLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRN+PERYDRN  EE LKAIKKIDKV A RESRHIA R +GKKAK L E                 LKED SLTLPKIKVKVVPSQ E NQ MEE
Subjt:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEE----------------DLKEDRSLTLPKIKVKVVPSQGEHNQPMEE

XP_038905541.1 probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida]7.6e-2167.68Show/hide
Query:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEE----------------DLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRN+PERYDRN  EE LKAIKKIDKV A RESRHIA R +GKKAK L E                 LKED SLTLPKIKVKVVPSQ E NQ MEE
Subjt:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEE----------------DLKEDRSLTLPKIKVKVVPSQGEHNQPMEE

TrEMBL top hitse value%identityAlignment
A0A5A7TR87 Putative ribosome biogenesis protein RLP242.0e-4398.91Show/hide
Query:  MKGCDTGKHEFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        MKGCDTGKHEFERKRN+PERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
Subjt:  MKGCDTGKHEFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE

A0A6J1C1W9 probable ribosome biogenesis protein RLP241.1e-2065.66Show/hide
Query:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRN+PERYDRN  EE L+AIKKIDKV A RESRHIA RM+GKKAK L+E                 LKED SLTLPKIKVKV  SQ E NQ MEE
Subjt:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE

A0A6J1GEZ5 probable ribosome biogenesis protein RLP242.4e-2063.64Show/hide
Query:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRN+PERYDRN  EE L+AIKKIDKV A RE+RHIA RM+GKK K L+E                 LKED SLTLPKI+VKV  SQ E NQPMEE
Subjt:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE

A0A6J1ILW2 probable ribosome biogenesis protein RLP241.1e-2065.66Show/hide
Query:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEE----------------DLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRN+PERYDRN  EE L+AIKKIDKV A RESRHIA RM+GKKAK L E                 LKED SLTLPKIKV V PSQ E NQ MEE
Subjt:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEE----------------DLKEDRSLTLPKIKVKVVPSQGEHNQPMEE

A0A6J1KWV2 probable ribosome biogenesis protein RLP242.4e-2063.64Show/hide
Query:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRN+PERYDRN  EE L+AIKKIDKV A RE+RHIA RM+GKK K L+E                 LKED SLTLPKI+VKV  SQ E NQPMEE
Subjt:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE

SwissProt top hitse value%identityAlignment
O22165 Probable ribosome biogenesis protein RLP241.1e-1146.67Show/hide
Query:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DRSLTL------PKIKVKVVPSQGEHNQPMEE
        EFE+KRN+PERYDRN  E  L AIKKI K+   RE++HI  R++  K K L +D+KE D+++ +       KIKV V   +   N+ MEE
Subjt:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DRSLTL------PKIKVKVVPSQGEHNQPMEE

Arabidopsis top hitse value%identityAlignment
AT2G44860.1 Ribosomal protein L24e family protein8.1e-1346.67Show/hide
Query:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DRSLTL------PKIKVKVVPSQGEHNQPMEE
        EFE+KRN+PERYDRN  E  L AIKKI K+   RE++HI  R++  K K L +D+KE D+++ +       KIKV V   +   N+ MEE
Subjt:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DRSLTL------PKIKVKVVPSQGEHNQPMEE

AT2G44860.2 Ribosomal protein L24e family protein8.1e-1346.67Show/hide
Query:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DRSLTL------PKIKVKVVPSQGEHNQPMEE
        EFE+KRN+PERYDRN  E  L AIKKI K+   RE++HI  R++  K K L +D+KE D+++ +       KIKV V   +   N+ MEE
Subjt:  EFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DRSLTL------PKIKVKVVPSQGEHNQPMEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGATGTGACACAGGTAAACATGAGTTTGAGAGGAAGCGCAATAAACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCATTGAAGGCTATAAAGAAGATTGA
TAAAGTCATAGCGATTAGGGAATCAAGACACATTGCATGGAGAATGCGTGGAAAGAAAGCAAAGGGGCTTGAAGAGGATCTGAAGGAGGATCGTTCCCTCACCCTTCCAA
AGATCAAAGTCAAGGTGGTACCATCACAAGGAGAGCACAATCAGCCTATGGAAGAATGA
mRNA sequenceShow/hide mRNA sequence
CCTGTTCTAACTTGGCCCGTTTGTAATTTGTTGTTTCGTATGCTTATTAGACTGTAGAAATAGATATGTTTTTCGTTGGGGTCTTAAATTAGTGATGATGGGGAGAACCA
CATGATCAAGATGAAGAGAAATCACCGTAAAGTAAAATGGACCAAGGCATATAGGAGGTTGCATGAAAGGATGTGACACAGGTAAACATGAGTTTGAGAGGAAGCGCAAT
AAACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCATTGAAGGCTATAAAGAAGATTGATAAAGTCATAGCGATTAGGGAATCAAGACACATTGCATGGAGAATGCG
TGGAAAGAAAGCAAAGGGGCTTGAAGAGGATCTGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCATCACAAGGAGAGCACAATCAGCCTA
TGGAAGAATGAGTTTGTTACTTTTCTTATCTCACTATTTCAAATATTTACTTTTATCACATATCTTCAACTACCACATTTCTTGCACAGCGGCAGATTGCCATTGTCTGT
CCTTACACACGCATGGTTCTTCTGTAGAAGTTCAATTTGAAAACGCTTAATCATCTTTTATGTTCATCTCAATCTGATTTTTCTTATTAGCAAGCATGGAATGAGTCTTG
CTGTGCCCTCTCTCTTTCTTCCTCCCTTCATAGCTTCATCCCAAGCTTTCGAAGAGTTTCTTTTCCGATGTTCTGGCTGCCCTTTGGTTCTTGTTTTTTATTTTGTTTCA
AATCCACCTTTACAGTAAGACATTGATAGGATGGGTTGGGACTTGAAATTTCAAGTTGTATTAATTACTCTAAATAAGCTTTTCGACTAGTTAGGTGGTATGTCCCGTGA
GAATCGTTGAAGTACACGTAAGTTAGTCCGGACACTCACAAATATACATTATGGATGAGTATGTCTCTACAAAGTGTGGCACTGAAATTAGTAACTTTCACAAGATTGAG
TATTGTCTTAGTTTGGATATTGCATTTTAAAACATTGACTTTTTTATTTCCATAGGGCAACCTCCTTTTTTCTTTCTCCTTTTTCTTTTAGATAATGTCAACTATTTGAA
TCAGTTGTTTTTATTATTCCCTTGAAGAAAATAAAGTCGGTCTTTATATATTTGTTTATAAAAAGGAAAGTTTAATGTAAGGCCTCTTTTGTTCCATAGGTCACATTCAT
TTTTTTTTATATGAAAGTTGTTTATTATATATCTTGAAACATAATTTTGAA
Protein sequenceShow/hide protein sequence
MKGCDTGKHEFERKRNKPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE