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Cmc05g0125491 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc05g0125491
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr05:2569726..2570265
RNA-Seq ExpressionCmc05g0125491
SyntenyCmc05g0125491
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]7.9e-9194.41Show/hide
Query:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ
        +MEGPLLGIADVTKPFEVETDAS+YALGGVLLQNGHPI YESRKLN AERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFFTQPKLT KQ
Subjt:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ

Query:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
        ARWQEFLAEFDFEFEHKK S+NQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDHAAQNVMNL KAGKTR
Subjt:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR

KAA0057281.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-96100Show/hide
Query:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ
        MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ
Subjt:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ

Query:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
        ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
Subjt:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR

KAA0060348.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-9195.53Show/hide
Query:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ
        MMEGPLLGIADVTKPFEVETDAS+YALGGVLLQNGHPI YE RKLNVAERRYTVSEKEMLAVVHCLRAWRQYLL S+FVVKTDNSATCHFFTQPKLTLKQ
Subjt:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ

Query:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
        ARWQEFLA+FDFEFEHKK S+NQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
Subjt:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]7.9e-9194.41Show/hide
Query:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ
        +MEGPLLGIADVTKPFEVETDAS+YALGGVLLQNGHPI YESRKLN AERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFFTQPKLT KQ
Subjt:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ

Query:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
        ARWQEFLAEFDFEFEHKK S+NQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDHAAQNVMNL KAGKTR
Subjt:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR

TYK01597.1 reverse transcriptase [Cucumis melo var. makuwa]2.6e-9498.32Show/hide
Query:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ
        MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFFTQPKLT KQ
Subjt:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ

Query:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
        ARWQEFLAEFDFEFEHKK SNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
Subjt:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR

TrEMBL top hitse value%identityAlignment
A0A5A7UUV5 Reverse transcriptase1.4e-96100Show/hide
Query:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ
        MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ
Subjt:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ

Query:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
        ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
Subjt:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR

A0A5A7UYM0 Reverse transcriptase1.0e-9195.53Show/hide
Query:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ
        MMEGPLLGIADVTKPFEVETDAS+YALGGVLLQNGHPI YE RKLNVAERRYTVSEKEMLAVVHCLRAWRQYLL S+FVVKTDNSATCHFFTQPKLTLKQ
Subjt:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ

Query:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
        ARWQEFLA+FDFEFEHKK S+NQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
Subjt:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR

A0A5D3BQE4 Reverse transcriptase1.3e-9498.32Show/hide
Query:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ
        MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFFTQPKLT KQ
Subjt:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ

Query:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
        ARWQEFLAEFDFEFEHKK SNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
Subjt:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR

A0A5D3BRZ6 Reverse transcriptase3.8e-9194.41Show/hide
Query:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ
        +MEGPLLGIADVTKPFEVETDAS+YALGGVLLQNGHPI YESRKLN AERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFFTQPKLT KQ
Subjt:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ

Query:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
        ARWQEFLAEFDFEFEHKK S+NQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDHAAQNVMNL KAGKTR
Subjt:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR

A0A5D3C4R1 Reverse transcriptase3.8e-9194.41Show/hide
Query:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ
        +MEGPLLGIADVTKPFEVETDAS+YALGGVLLQNGHPI YESRKLN AERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFFTQPKLT KQ
Subjt:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ

Query:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR
        ARWQEFLAEFDFEFEHKK S+NQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDHAAQNVMNL KAGKTR
Subjt:  ARWQEFLAEFDFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.69.6e-2343.75Show/hide
Query:  EGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQAR
        E P+L + D TK F + TDAS+ ALG VL Q+GHP++Y SR LN  E  Y+  EKE+LA+V   + +R YLLG  F + +D+      +       K  R
Subjt:  EGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQAR

Query:  WQEFLAEFDFEFEHKKRSNNQAADALSR
        W+  L+EFDF+ ++ K   N  ADALSR
Subjt:  WQEFLAEFDFEFEHKKRSNNQAADALSR

P0CT34 Transposon Tf2-1 polyprotein6.7e-1638.57Show/hide
Query:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNG-----HPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGS--TFVVKTDNSATCHFFT-
        ++  P+L   D +K   +ETDAS+ A+G VL Q       +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL  +   F + TD+       T 
Subjt:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNG-----HPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGS--TFVVKTDNSATCHFFT-

Query:  --QPKLTLKQARWQEFLAEFDFEFEHKKRSNNQAADALSR
          +P+   + ARWQ FL +F+FE  ++  S N  ADALSR
Subjt:  --QPKLTLKQARWQEFLAEFDFEFEHKKRSNNQAADALSR

P0CT41 Transposon Tf2-12 polyprotein6.7e-1638.57Show/hide
Query:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNG-----HPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGS--TFVVKTDNSATCHFFT-
        ++  P+L   D +K   +ETDAS+ A+G VL Q       +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL  +   F + TD+       T 
Subjt:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNG-----HPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGS--TFVVKTDNSATCHFFT-

Query:  --QPKLTLKQARWQEFLAEFDFEFEHKKRSNNQAADALSR
          +P+   + ARWQ FL +F+FE  ++  S N  ADALSR
Subjt:  --QPKLTLKQARWQEFLAEFDFEFEHKKRSNNQAADALSR

P20825 Retrovirus-related Pol polyprotein from transposon 2973.1e-2141.54Show/hide
Query:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ
        ++  P+L + D  K F + TDASN ALG VL QNGHPI++ SR LN  E  Y+  EKE+LA+V   + +R YLLG  F++ +D+          +   K 
Subjt:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQ

Query:  ARWQEFLAEFDFEFEHKKRSNNQAADALSR
         RW+  L+E+ F+ ++ K   N  ADALSR
Subjt:  ARWQEFLAEFDFEFEHKKRSNNQAADALSR

Q9UR07 Transposon Tf2-11 polyprotein6.7e-1638.57Show/hide
Query:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNG-----HPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGS--TFVVKTDNSATCHFFT-
        ++  P+L   D +K   +ETDAS+ A+G VL Q       +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL  +   F + TD+       T 
Subjt:  MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNG-----HPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGS--TFVVKTDNSATCHFFT-

Query:  --QPKLTLKQARWQEFLAEFDFEFEHKKRSNNQAADALSR
          +P+   + ARWQ FL +F+FE  ++  S N  ADALSR
Subjt:  --QPKLTLKQARWQEFLAEFDFEFEHKKRSNNQAADALSR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGAGGGGCCACTTCTAGGGATTGCGGATGTGACCAAACCTTTTGAAGTCGAGACAGATGCGTCTAATTATGCGTTGGGGGGTGTGCTCCTACAGAATGGACACCC
GATTACATACGAAAGTCGAAAATTAAATGTAGCCGAAAGGAGGTATACTGTGTCCGAAAAAGAAATGCTCGCAGTAGTACATTGTTTGAGGGCCTGGAGACAATACCTAC
TAGGTTCGACGTTTGTAGTGAAGACGGACAACAGTGCAACCTGCCACTTCTTTACCCAGCCAAAGTTGACTTTGAAACAAGCAAGATGGCAGGAATTTCTGGCCGAGTTC
GACTTTGAATTTGAACACAAGAAGAGGTCGAACAACCAGGCTGCTGATGCCCTAAGTCGAAAACAAGAACATGCTGCCATATGCCTATTAGCTCACCTCCGGGGGAGCGA
GATTGGCGGGTCGGTTAGAGACACCTTGAGAGAGTTCCTACAGAAGGATCATGCCGCTCAGAATGTCATGAATTTAGTGAAGGCGGGCAAAACACGATAG
mRNA sequenceShow/hide mRNA sequence
ATGATGGAGGGGCCACTTCTAGGGATTGCGGATGTGACCAAACCTTTTGAAGTCGAGACAGATGCGTCTAATTATGCGTTGGGGGGTGTGCTCCTACAGAATGGACACCC
GATTACATACGAAAGTCGAAAATTAAATGTAGCCGAAAGGAGGTATACTGTGTCCGAAAAAGAAATGCTCGCAGTAGTACATTGTTTGAGGGCCTGGAGACAATACCTAC
TAGGTTCGACGTTTGTAGTGAAGACGGACAACAGTGCAACCTGCCACTTCTTTACCCAGCCAAAGTTGACTTTGAAACAAGCAAGATGGCAGGAATTTCTGGCCGAGTTC
GACTTTGAATTTGAACACAAGAAGAGGTCGAACAACCAGGCTGCTGATGCCCTAAGTCGAAAACAAGAACATGCTGCCATATGCCTATTAGCTCACCTCCGGGGGAGCGA
GATTGGCGGGTCGGTTAGAGACACCTTGAGAGAGTTCCTACAGAAGGATCATGCCGCTCAGAATGTCATGAATTTAGTGAAGGCGGGCAAAACACGATAG
Protein sequenceShow/hide protein sequence
MMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAERRYTVSEKEMLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTLKQARWQEFLAEF
DFEFEHKKRSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTR