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Cmc05g0126201 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc05g0126201
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTransposon Tf2-6 polyprotein
Genome locationCMiso1.1chr05:3395491..3395790
RNA-Seq ExpressionCmc05g0126201
SyntenyCmc05g0126201
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041543.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]3.9e-4796.91Show/hide
Query:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG
        MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLL KNAFHWNEEATIAFELLKTSMTTTPVL LPDWSLPFVLET+ASGIGLGTMLSQNG
Subjt:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG

KAA0057348.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]8.4e-42100Show/hide
Query:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDAS
        MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDAS
Subjt:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDAS

KAE8637598.1 hypothetical protein CSA_022681 [Cucumis sativus]1.0e-3981.44Show/hide
Query:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG
        M+N P+PKD+TGLRGFLGLTGYYRRFVK YGEIAAPLTKLLQKNAFHWNEEATIAF+ LK +MTT PVL LPDWS PF +ETDASG+GLG +LSQ+G
Subjt:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG

XP_031742100.1 uncharacterized protein LOC116404055 [Cucumis sativus]1.0e-3981.44Show/hide
Query:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG
        M+N P+PKD+TGLRGFLGLTGYYRRFVK YGEIAAPLTKLLQKNAFHWNEEATIAF+ LK +MTT PVL LPDWS PF +ETDASG+GLG +LSQ+G
Subjt:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG

XP_031745419.1 uncharacterized protein LOC116405630 [Cucumis sativus]1.0e-3981.44Show/hide
Query:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG
        M+N P+PKD+TGLRGFLGLTGYYRRFVK YGEIAAPLTKLLQKNAFHWNEEATIAF+ LK +MTT PVL LPDWS PF +ETDASG+GLG +LSQ+G
Subjt:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG

TrEMBL top hitse value%identityAlignment
A0A5A7TEH1 Transposon Tf2-6 polyprotein1.9e-4796.91Show/hide
Query:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG
        MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLL KNAFHWNEEATIAFELLKTSMTTTPVL LPDWSLPFVLET+ASGIGLGTMLSQNG
Subjt:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG

A0A5A7TII1 Uncharacterized protein1.2e-3880.41Show/hide
Query:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG
        M+  PQPKD+TGLRGFLGLTGYYRRFVK YGEIAAPLTKLLQKNAF W+E AT+AFE LK++MTT PVL LPDWSLPF++ETDASG GLG +LSQNG
Subjt:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG

A0A5A7TLY4 Retrotransposable element Tf21.2e-3881.44Show/hide
Query:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG
        M+  PQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKN+F W+EEAT+AFE LK +MTT PVL LPDWSLPF++E DASG GLG +LSQNG
Subjt:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG

A0A5A7UQF1 Retrotransposable element Tf24.1e-42100Show/hide
Query:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDAS
        MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDAS
Subjt:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDAS

A0A5D3CPQ1 Transposon Ty3-G Gag-Pol polyprotein4.2e-3982.29Show/hide
Query:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQN
        M+  PQPKD+TGLRGFLGLTGYYRRFVK YGEIAAPLTKLLQKNAF W+EEAT+AFE LKT+MTT PVL LPDWSLPF++ETDASG GLG +LSQN
Subjt:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQN

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.4e-1544.21Show/hide
Query:  PQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKN--AFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG
        P P     ++ FLGLTGYYR+F+  + +IA P+TK L+KN      N E   AF+ LK  ++  P+L +PD++  F L TDAS + LG +LSQ+G
Subjt:  PQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKN--AFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG

P10273 Gag-Pol polyprotein2.1e-1137.37Show/hide
Query:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNA-FHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDA-SGIGLGTMLSQNG
        +++ P PK+   +R FLG  GY R ++ G+ E+AAPL  L +    F W  E  +AFE +K ++ ++P L LPD + PF L  D  SG   G ++ + G
Subjt:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNA-FHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDA-SGIGLGTMLSQNG

P10401 Retrovirus-related Pol polyprotein from transposon gypsy2.7e-1138.68Show/hide
Query:  PQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLL------------QKNAFHWNEEATIAFELLKTSMTTTPV-LTLPDWSLPFVLETDASGIGLGT
        P+P  V  +R FLGL  YYR F+K +  IA P+T +L            +K    +NE    AF+ L+  + +  V L  PD+  PF L TDAS  G+G 
Subjt:  PQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLL------------QKNAFHWNEEATIAFELLKTSMTTTPV-LTLPDWSLPFVLETDASGIGLGT

Query:  MLSQNG
        +LSQ G
Subjt:  MLSQNG

P20825 Retrovirus-related Pol polyprotein from transposon 2972.8e-1645.45Show/hide
Query:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNE--EATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG
        +++ P P     +R FLGLTGYYR+F+  Y +IA P+T  L+K      +  E   AFE LK  +   P+L LPD+   FVL TDAS + LG +LSQNG
Subjt:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNE--EATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNG

P92523 Uncharacterized mitochondrial protein AtMg008601.8e-2363.29Show/hide
Query:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFV
        M+  P+PK+ T LRGFLGLTGYYRRFVK YG+I  PLT+LL+KN+  W E A +AF+ LK ++TT PVL LPD  LPFV
Subjt:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFV

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.3e-2463.29Show/hide
Query:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFV
        M+  P+PK+ T LRGFLGLTGYYRRFVK YG+I  PLT+LL+KN+  W E A +AF+ LK ++TT PVL LPD  LPFV
Subjt:  MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAAATTGTCCACAACCCAAGGATGTGACAGGATTAAGGGGTTTCCTAGGCTTGACGGGGTATTATAGAAGGTTTGTGAAGGGCTATGGTGAAATTGCAGCCCCATT
AACCAAACTCCTACAGAAGAATGCATTCCATTGGAATGAAGAAGCCACAATAGCCTTTGAACTGCTTAAAACTTCCATGACTACCACACCCGTACTAACTCTCCCGGATT
GGTCTTTGCCCTTTGTGCTGGAAACGGATGCTTCAGGTATTGGTTTGGGAACGATGTTGTCACAAAATGGCATCCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGATAAATTGTCCACAACCCAAGGATGTGACAGGATTAAGGGGTTTCCTAGGCTTGACGGGGTATTATAGAAGGTTTGTGAAGGGCTATGGTGAAATTGCAGCCCCATT
AACCAAACTCCTACAGAAGAATGCATTCCATTGGAATGAAGAAGCCACAATAGCCTTTGAACTGCTTAAAACTTCCATGACTACCACACCCGTACTAACTCTCCCGGATT
GGTCTTTGCCCTTTGTGCTGGAAACGGATGCTTCAGGTATTGGTTTGGGAACGATGTTGTCACAAAATGGCATCCAATAG
Protein sequenceShow/hide protein sequence
MINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFHWNEEATIAFELLKTSMTTTPVLTLPDWSLPFVLETDASGIGLGTMLSQNGIQ