CuGenDBv2

Gene ID	Cmc05g0126421
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	protein PALE CRESS, chloroplastic
Genome location	CMiso1.1chr05:3606913..3615280
RNA-Seq Expression	Cmc05g0126421
Synteny	Cmc05g0126421
Gene Ontology terms	GO:0009658 - chloroplast organization (biological process) GO:0009965 - leaf morphogenesis (biological process) GO:0010239 - chloroplast mRNA processing (biological process) GO:0042254 - ribosome biogenesis (biological process) GO:0071482 - cellular response to light stimulus (biological process) GO:2000762 - regulation of phenylpropanoid metabolic process (biological process) GO:0009501 - amyloplast (cellular component) GO:0009509 - chromoplast (cellular component) GO:0009513 - etioplast (cellular component) GO:0009537 - proplastid (cellular component) GO:0016592 - mediator complex (cellular component) GO:0042644 - chloroplast nucleoid (cellular component) GO:0019843 - rRNA binding (molecular function) GO:0043621 - protein self-association (molecular function)
InterPro domains	IPR034563 - Protein PALE CRESS

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140086.1 protein PALE CRESS, chloroplastic [Cucumis sativus]

1.2e-78

88.77

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Query:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL
        MEAQ+LCLRFSSLP LLSTTPIL KLWTS SS   SSGLVLRRS SKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKV+EY EIGMRL
Subjt:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL

Query:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR
        KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVE  E+++ E+    R
Subjt:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR

XP_008449384.1 PREDICTED: protein PALE CRESS, chloroplastic [Cucumis melo]

1.1e-85

94.12

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Query:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL
        MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL
Subjt:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL

Query:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR
        KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVE  E+++ E+    R
Subjt:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR

XP_022995861.1 protein PALE CRESS, chloroplastic [Cucurbita maxima]

5.4e-66

80.21

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Query:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL
        M AQVL LR S +P L S +P L KL TS   K YSS  VLRRS SKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEE+RKV+EY EIGMRL
Subjt:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL

Query:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR
        K FPEEDVRKARKLVSSFIRA EEVEEKIEEAAEKGELTELVLLVIWNRLDLAR DDEKDA+RSLDLLYRRVE  E+++ E++   R
Subjt:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR

XP_023534033.1 protein PALE CRESS, chloroplastic [Cucurbita pepo subsp. pepo]

4.6e-65

79.68

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Query:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL
        M AQVL LR S +P L S +P L KL TS   K YSS  VLRRS SKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEE+RKV+EY EIGMRL
Subjt:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL

Query:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR
        K FPEEDV KARKLVSSFIRA EEVEEKIEEAAEKGELTELVLLVIWNRLDLAR DDEKDA+RSLDLLYRRVE  E+++ E++   R
Subjt:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR

XP_038888470.1 protein PALE CRESS, chloroplastic isoform X1 [Benincasa hispida]

1.3e-75

86.1

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Query:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL
        MEAQVLCLRFS +P LLST+ IL KLWTSR  KHYSSG VLRRS SKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKV+EY EIGMRL
Subjt:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL

Query:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR
        K FPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLAR DDEKDA+RSLDLLYRRVE  E+++ E+    R
Subjt:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJC6 Uncharacterized protein

6.0e-79

88.77

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Query:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL
        MEAQ+LCLRFSSLP LLSTTPIL KLWTS SS   SSGLVLRRS SKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKV+EY EIGMRL
Subjt:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL

Query:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR
        KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVE  E+++ E+    R
Subjt:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR

A0A1S3BMU2 protein PALE CRESS, chloroplastic

5.1e-86

94.12

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Query:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL
        MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL
Subjt:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL

Query:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR
        KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVE  E+++ E+    R
Subjt:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR

A0A5D3E2R9 Protein PALE CRESS

5.1e-86

94.12

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Query:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL
        MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL
Subjt:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL

Query:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR
        KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVE  E+++ E+    R
Subjt:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR

A0A6J1DYX0 protein PALE CRESS, chloroplastic

6.5e-65

78.07

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Query:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL
        MEA VL LR   +P L S +  L KL TS  SK +S G VLR S SKEEPLIDGLPKE+YDDEWQARQREKTKELHRRRQEEDEEE+RKV+EY EIGMRL
Subjt:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL

Query:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR
        K FPEEDV KARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLAR DDEKDA+RSLDLLYRRVE  E+++ E+    R
Subjt:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR

A0A6J1K329 protein PALE CRESS, chloroplastic

2.6e-66

80.21

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Query:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL
        M AQVL LR S +P L S +P L KL TS   K YSS  VLRRS SKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEE+RKV+EY EIGMRL
Subjt:  MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRL

Query:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR
        K FPEEDVRKARKLVSSFIRA EEVEEKIEEAAEKGELTELVLLVIWNRLDLAR DDEKDA+RSLDLLYRRVE  E+++ E++   R
Subjt:  KEFPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSR

SwissProt top hits

e value

%identity

Alignment

Q39089 Protein PALE CRESS, chloroplastic

3.3e-50

66.47

Show/hide

Query:  SLPQLLSTTPILSKLWTSRSSKHYSSGLVLRR-SFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRLKEFPEEDVRK
        S P+++S T    KL T  S    S+    RR S + +E L++G+P EYYDDEWQARQREKTKEL R ++EE+EEE+RK++EY EIG RLKEFPE+D+RK
Subjt:  SLPQLLSTTPILSKLWTSRSSKHYSSGLVLRR-SFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRLKEFPEEDVRK

Query:  ARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESN
        ARKLVSSFIRAAEEVEE+IEEAAEKGEL ELVL++IWNRLDLAR DDEKDA+RSLDLLYRRVE  E+++ +++
Subjt:  ARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESN

Arabidopsis top hits

e value

%identity

Alignment

AT2G48120.1 pale cress protein (PAC)

2.4e-51

66.47

Show/hide

Query:  SLPQLLSTTPILSKLWTSRSSKHYSSGLVLRR-SFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRLKEFPEEDVRK
        S P+++S T    KL T  S    S+    RR S + +E L++G+P EYYDDEWQARQREKTKEL R ++EE+EEE+RK++EY EIG RLKEFPE+D+RK
Subjt:  SLPQLLSTTPILSKLWTSRSSKHYSSGLVLRR-SFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRLKEFPEEDVRK

Query:  ARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESN
        ARKLVSSFIRAAEEVEE+IEEAAEKGEL ELVL++IWNRLDLAR DDEKDA+RSLDLLYRRVE  E+++ +++
Subjt:  ARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESN

AT2G48120.2 pale cress protein (PAC)

1.1e-45

63.01

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Query:  SLPQLLSTTPILSKLWTSRSSKHYSSGLVLRR-SFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRLKEFPEEDVRK
        S P+++S T    KL T  S    S+    RR S + +E L++G+P EYYDD      REKTKEL R ++EE+EEE+RK++EY EIG RLKEFPE+D+RK
Subjt:  SLPQLLSTTPILSKLWTSRSSKHYSSGLVLRR-SFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRLKEFPEEDVRK

Query:  ARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESN
        ARKLVSSFIRAAEEVEE+IEEAAEKGEL ELVL++IWNRLDLAR DDEKDA+RSLDLLYRRVE  E+++ +++
Subjt:  ARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGGCACAGGTACTTTGCCTGAGGTTCTCATCACTTCCACAATTGCTCTCCACTACCCCAATCTTATCAAAGCTTTGGACATCTCGTTCCTCCAAGCACTAT
TCATCTGGTCTTGTTTTACGGAGGAGCTTCAGCAAAGAAGAGCCGCTTATTGATGGGCTCCCTAAAGAGTATTACGATGATGAATGGCAAGCTCGGCAAAGAGAG
AAGACGAAGGAGTTACATCGAAGGCGTCAAGAGGAAGATGAAGAAGAGGACAGAAAGGTACAAGAATATCATGAAATTGGAATGCGTCTGAAAGAATTTCCAGAA
GAAGATGTCAGAAAAGCTCGAAAACTGGTTTCAAGCTTTATTAGAGCTGCTGAAGAAGTTGAAGAGAAAATTGAGGAAGCTGCCGAGAAAGGGGAACTAACAGAG
CTTGTTCTGTTAGTTATATGGAATCGGCTTGATTTAGCACGTTGTGATGATGAAAAGGATGCAGTTAGAAGTCTTGATCTGCTATATCGAAGGGTGGAGTACATG
GAAGTTATACGATCTGAATCAAACAAGAGAAGTCGAAACTGA

mRNA sequence

Show/hide mRNA sequence

TGAAAGAATTTGTGTAATTTTAATTTTTAGGGATAATATCTCAAAGAAGTTTTAGAGGGATAATGATATTTTCTTCTTGCCTTTGTGTTGTTGGCTTTGATGGGG
CGTTCTTATTTTCCAGCTTCCTTTCTTTGTTTGGGAAACTAGAAAATGGAGGCACAGGTACTTTGCCTGAGGTTCTCATCACTTCCACAATTGCTCTCCACTACC
CCAATCTTATCAAAGCTTTGGACATCTCGTTCCTCCAAGCACTATTCATCTGGTCTTGTTTTACGGAGGAGCTTCAGCAAAGAAGAGCCGCTTATTGATGGGCTC
CCTAAAGAGTATTACGATGATGAATGGCAAGCTCGGCAAAGAGAGAAGACGAAGGAGTTACATCGAAGGCGTCAAGAGGAAGATGAAGAAGAGGACAGAAAGGTA
CAAGAATATCATGAAATTGGAATGCGTCTGAAAGAATTTCCAGAAGAAGATGTCAGAAAAGCTCGAAAACTGGTTTCAAGCTTTATTAGAGCTGCTGAAGAAGTT
GAAGAGAAAATTGAGGAAGCTGCCGAGAAAGGGGAACTAACAGAGCTTGTTCTGTTAGTTATATGGAATCGGCTTGATTTAGCACGTTGTGATGATGAAAAGGAT
GCAGTTAGAAGTCTTGATCTGCTATATCGAAGGGTGGAGTACATGGAAGTTATACGATCTGAATCAAACAAGAGAAGTCGAAACTGAAACATTCTCAGTTTCTGA
CCACTAATAAACCAAGGAAGTGATCCTCCAAAATGTCCAACCAAACTGAAGAAATCTTCCAAAATGTCCAACCAAACAGAGGGAGGAGACTAATCTTGCAAGCCT
TGAAGAGGTCTTCTAAAAAAACAAAAACTCTGCTAGGTTTTCTATAAC

Protein sequence

Show/hide protein sequence

MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEDRKVQEYHEIGMRLKEFPE
EDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVEYMEVIRSESNKRSRN

Cmc05g0126421 (gene) of Melon (Charmono) v1.1 genome