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Cmc05g0126541 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc05g0126541
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCMiso1.1chr05:3733978..3734517
RNA-Seq ExpressionCmc05g0126541
SyntenyCmc05g0126541
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031744753.1 uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]8.2e-6374.86Show/hide
Query:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV
        LLSET KLGAKPSGTPMMPN QLVKE +LCKDPERY+RLVGKLNYLTVTRPDIAYSV+V                  ILCYLKAA GRGILYK H HTRV
Subjt:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV

Query:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL
        ECFS+ADWA S++DRRSTS YCVFVGGNLVSWKS+KQNVVS SSAESEY+    SV EIVWIHQ+LS IGFSI V  KL
Subjt:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL

XP_031744754.1 uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus]8.2e-6374.86Show/hide
Query:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV
        LLSET KLGAKPSGTPMMPN QLVKE +LCKDPERY+RLVGKLNYLTVTRPDIAYSV+V                  ILCYLKAA GRGILYK H HTRV
Subjt:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV

Query:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL
        ECFS+ADWA S++DRRSTS YCVFVGGNLVSWKS+KQNVVS SSAESEY+    SV EIVWIHQ+LS IGFSI V  KL
Subjt:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL

XP_031744755.1 uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus]8.2e-6374.86Show/hide
Query:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV
        LLSET KLGAKPSGTPMMPN QLVKE +LCKDPERY+RLVGKLNYLTVTRPDIAYSV+V                  ILCYLKAA GRGILYK H HTRV
Subjt:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV

Query:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL
        ECFS+ADWA S++DRRSTS YCVFVGGNLVSWKS+KQNVVS SSAESEY+    SV EIVWIHQ+LS IGFSI V  KL
Subjt:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL

XP_031744756.1 uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus]8.2e-6374.86Show/hide
Query:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV
        LLSET KLGAKPSGTPMMPN QLVKE +LCKDPERY+RLVGKLNYLTVTRPDIAYSV+V                  ILCYLKAA GRGILYK H HTRV
Subjt:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV

Query:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL
        ECFS+ADWA S++DRRSTS YCVFVGGNLVSWKS+KQNVVS SSAESEY+    SV EIVWIHQ+LS IGFSI V  KL
Subjt:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL

XP_031744758.1 uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus]8.2e-6374.86Show/hide
Query:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV
        LLSET KLGAKPSGTPMMPN QLVKE +LCKDPERY+RLVGKLNYLTVTRPDIAYSV+V                  ILCYLKAA GRGILYK H HTRV
Subjt:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV

Query:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL
        ECFS+ADWA S++DRRSTS YCVFVGGNLVSWKS+KQNVVS SSAESEY+    SV EIVWIHQ+LS IGFSI V  KL
Subjt:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL

TrEMBL top hitse value%identityAlignment
A0A5A7SQ84 Putative mitochondrial protein2.8e-5668.33Show/hide
Query:  GLLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTR
        G   +T KL AKPSGTPMM N  LVKE KLCKDPERY+RLVGKLNYLT+TRPDIAY V+V                  ILCY KAA GRGILYK H HTR
Subjt:  GLLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTR

Query:  VECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL
        VECFS+ADWA S++DRRSTS YCVFVGG LVSWKS+KQNVVS SSA+SEY+    SV EI WIHQ+LS IGFSI V  KL
Subjt:  VECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL

A0A5A7UHS1 Retrovirus-related Pol polyprotein from transposon TNT 1-946.6e-5871.1Show/hide
Query:  KLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRVECFSNA
        KLG KPSGTPMM N QLVKE +LCKDP+RY RLVGKLNYLTVTRPDIAYSV+V                  ILCYLKAASGRGILYK H HT+V+CFS+A
Subjt:  KLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRVECFSNA

Query:  DWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL
        DW  S++DRRS S YCVFVGGNLVSWKS+KQNVVSCSSA+SEY+    SV EIVWIHQ+LS IGFSI V  KL
Subjt:  DWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL

A0A5D3C204 Putative mitochondrial protein2.4e-5271.15Show/hide
Query:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV
        LLSET KLGAKPSGT MMPN QLVKE KLCKDPERY+RLVGKLNYLT+T+PDIAYSV+V                  ILCYLKAA GRGILYK H HTRV
Subjt:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV

Query:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYKSVSEIV
        ECFS+ADWA S++D  S+S YCVFVGGNLVSWKS+KQNVVS SSAESEY+++++ V
Subjt:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYKSVSEIV

A0A5D3CID2 Putative mitochondrial protein8.6e-5872.25Show/hide
Query:  KLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRVECFSNA
        KL AKPSGTPMMPN QLVKE KLCKDPERY+RLVGKLNYLTVTRPDIAYSV+V                  ILCYLKAA G GIL K H HTRVECFS+A
Subjt:  KLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRVECFSNA

Query:  DWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL
        DWA S++DRRST  YCVFVGGNLVSWKS+KQNVVSC SAES+Y+    SV EIVWIHQ+LS IGFSI V  KL
Subjt:  DWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL

A0A5D3DZU1 Retrovirus-related Pol polyprotein from transposon TNT 1-946.6e-5871.1Show/hide
Query:  KLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRVECFSNA
        KLG KPSGTPMM N QLVKE +LCKDP+RY RLVGKLNYLTVTRPDIAYSV+V                  ILCYLKAASGRGILYK H HT+V+CFS+A
Subjt:  KLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRVECFSNA

Query:  DWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL
        DW  S++DRRS S YCVFVGGNLVSWKS+KQNVVSCSSA+SEY+    SV EIVWIHQ+LS IGFSI V  KL
Subjt:  DWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYK----SVSEIVWIHQVLSNIGFSIIVLTKL

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.4e-0928.4Show/hide
Query:  PMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTV-TRPDIAYSVNV------------------ILCYLKAASGRGILYKGH--EHTRVECFSNADWARSQ
        P   N++L+   + C  P R   L+G L Y+ + TRPD+  +VN+                  +L YLK      +++K +     ++  + ++DWA S+
Subjt:  PMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTV-TRPDIAYSVNV------------------ILCYLKAASGRGILYKGH--EHTRVECFSNADWARSQ

Query:  KDRRSTSEYCV-FVGGNLVSWKSEKQNVVSCSSAESEY----KSVSEIVWIHQVLSNIGFSI
         DR+ST+ Y       NL+ W +++QN V+ SS E+EY    ++V E +W+  +L++I   +
Subjt:  KDRRSTSEYCV-FVGGNLVSWKSEKQNVVSCSSAESEY----KSVSEIVWIHQVLSNIGFSI

P0CV72 Secreted RxLR effector protein 1619.9e-1135.16Show/hide
Query:  YKRLVGKLNYL-TVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRVECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKS
        Y   VG + YL  VTRPD+A +V V                  +L YL++    G+ +      ++  +S+ADWA   + RRSTS Y   + G  VSW+S
Subjt:  YKRLVGKLNYL-TVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRVECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKS

Query:  EKQNVVSCSSAESEYKSVS----EIVWI
        +KQ  V+ SS E EY ++S    E VW+
Subjt:  EKQNVVSCSSAESEYKSVS----EIVWI

P92519 Uncharacterized mitochondrial protein AtMg008102.2e-1831.68Show/hide
Query:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV
        +L+    L  KP  TP+              DP  ++ +VG L YLT+TRPDI+Y+VN+                  +L Y+K     G+    +    V
Subjt:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV

Query:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYKSV----SEIVW
        + F ++DWA     RRST+ +C F+G N++SW +++Q  VS SS E+EY+++    +E+ W
Subjt:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYKSV----SEIVW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.4e-2036.78Show/hide
Query:  LLSETRKLGAKPSGTPMMPNHQL-VKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVN------------------VILCYLKAASGRGILYKGHEHTR
        LL+ T  + AKP  TPM P+ +L +       DP  Y+ +VG L YL  TRPDI+Y+VN                   IL YL      GI  K      
Subjt:  LLSETRKLGAKPSGTPMMPNHQL-VKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVN------------------VILCYLKAASGRGILYKGHEHTR

Query:  VECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYKSV----SEIVWIHQVLSNIGFSI
        +  +S+ADWA  + D  ST+ Y V++G + +SW S+KQ  V  SS E+EY+SV    SE+ WI  +L+ +G  +
Subjt:  VECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYKSV----SEIVWIHQVLSNIGFSI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE28.9e-2035.63Show/hide
Query:  LLSETRKLGAKPSGTPMMPNHQL-VKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVN------------------VILCYLKAASGRGILYKGHEHTR
        LL+ T  L AKP  TPM  + +L +       DP  Y+ +VG L YL  TRPD++Y+VN                   +L YL      GI  K      
Subjt:  LLSETRKLGAKPSGTPMMPNHQL-VKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVN------------------VILCYLKAASGRGILYKGHEHTR

Query:  VECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYKSV----SEIVWIHQVLSNIGFSI
        +  +S+ADWA    D  ST+ Y V++G + +SW S+KQ  V  SS E+EY+SV    SE+ WI  +L+ +G  +
Subjt:  VECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYKSV----SEIVWIHQVLSNIGFSI

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.1e-2438.79Show/hide
Query:  LLSETRKLGAKPSGTPMMPNHQL-VKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVN------------------VILCYLKAASGRGILYKGHEHTR
        LL ET  LG KPS  PM P+            D + Y+RL+G+L YL +TR DI+++VN                   IL Y+K   G+G+ Y      +
Subjt:  LLSETRKLGAKPSGTPMMPNHQL-VKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVN------------------VILCYLKAASGRGILYKGHEHTR

Query:  VECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYKSVS----EIVWIHQ
        ++ FS+A +   +  RRST+ YC+F+G +L+SWKS+KQ VVS SSAE+EY+++S    E++W+ Q
Subjt:  VECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYKSVS----EIVWIHQ

ATMG00810.1 DNA/RNA polymerases superfamily protein1.6e-1931.68Show/hide
Query:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV
        +L+    L  KP  TP+              DP  ++ +VG L YLT+TRPDI+Y+VN+                  +L Y+K     G+    +    V
Subjt:  LLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNV------------------ILCYLKAASGRGILYKGHEHTRV

Query:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYKSV----SEIVW
        + F ++DWA     RRST+ +C F+G N++SW +++Q  VS SS E+EY+++    +E+ W
Subjt:  ECFSNADWARSQKDRRSTSEYCVFVGGNLVSWKSEKQNVVSCSSAESEYKSV----SEIVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTTTGGTTTGTTGTCTGAGACAAGAAAATTAGGAGCCAAACCAAGTGGTACTCCGATGATGCCAAATCATCAACTTGTTAAAGAAAAAAAATTATGTAAAGATCC
TGAGAGATATAAGAGATTAGTTGGGAAGTTGAACTACTTAACAGTGACTCGACCAGACATTGCTTATTCTGTAAATGTGATTCTGTGTTATTTGAAAGCTGCTTCTGGAC
GTGGGATCTTATACAAAGGTCATGAACATACGAGAGTTGAATGTTTTTCTAATGCTGATTGGGCGAGATCTCAAAAGGATAGAAGATCGACCTCTGAATATTGTGTCTTT
GTAGGCGGAAACTTGGTATCATGGAAGAGTGAGAAACAAAATGTTGTTTCTTGTTCGAGTGCTGAGTCAGAATATAAATCTGTGAGCGAAATAGTATGGATTCACCAAGT
ATTATCTAATATAGGCTTCAGTATTATAGTGCTAACTAAATTATAG
mRNA sequenceShow/hide mRNA sequence
ATGTACTTTGGTTTGTTGTCTGAGACAAGAAAATTAGGAGCCAAACCAAGTGGTACTCCGATGATGCCAAATCATCAACTTGTTAAAGAAAAAAAATTATGTAAAGATCC
TGAGAGATATAAGAGATTAGTTGGGAAGTTGAACTACTTAACAGTGACTCGACCAGACATTGCTTATTCTGTAAATGTGATTCTGTGTTATTTGAAAGCTGCTTCTGGAC
GTGGGATCTTATACAAAGGTCATGAACATACGAGAGTTGAATGTTTTTCTAATGCTGATTGGGCGAGATCTCAAAAGGATAGAAGATCGACCTCTGAATATTGTGTCTTT
GTAGGCGGAAACTTGGTATCATGGAAGAGTGAGAAACAAAATGTTGTTTCTTGTTCGAGTGCTGAGTCAGAATATAAATCTGTGAGCGAAATAGTATGGATTCACCAAGT
ATTATCTAATATAGGCTTCAGTATTATAGTGCTAACTAAATTATAG
Protein sequenceShow/hide protein sequence
MYFGLLSETRKLGAKPSGTPMMPNHQLVKEKKLCKDPERYKRLVGKLNYLTVTRPDIAYSVNVILCYLKAASGRGILYKGHEHTRVECFSNADWARSQKDRRSTSEYCVF
VGGNLVSWKSEKQNVVSCSSAESEYKSVSEIVWIHQVLSNIGFSIIVLTKL