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Cmc05g0129151 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc05g0129151
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr05:6849272..6849826
RNA-Seq ExpressionCmc05g0129151
SyntenyCmc05g0129151
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0007033 - vacuole organization (biological process)
GO:0015074 - DNA integration (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004601 - peroxidase activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051400.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]9.4e-6377.7Show/hide
Query:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS
        M CQ NK+ ALSP GLL+PLEIPD IWS+ISMDFI+GLPKS G EVILVVVDRLSKY HF+ LKHPYTAKTVA+ FVKE+VKLHG+PKSIVSDR+K+FLS
Subjt:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS

Query:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRR
        HFW EMF L+ TKL+RS++YHPQ++GQTEVVN+ VEAYLRCFCGE+ R
Subjt:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRR

KAA0052373.1 peroxidase 64 [Cucumis melo var. makuwa]5.5e-6379.86Show/hide
Query:  CQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSHF
        CQ NKT ALSPAGLLMPLEIPD IWS+ISMDFI+GLPKSEG +VILVVVDRLSKYGHF+ LKHP+TAK VA+ FVKEV++LHGYP+SIVSDR+KVFLSHF
Subjt:  CQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSHF

Query:  WQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGER
        W+E+F L+ TKL+RS++YHPQS+GQTEVVN+ VE YLRCFCGER
Subjt:  WQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGER

TYK15990.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]9.4e-6377.18Show/hide
Query:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS
        M CQ NK+ ALSPAGLL+PLEIPD IWS+ISMDFI+GLPKS G EVILVVVDRLSKY HF+ LKHPYTAKTVA+ FVKEVV+LHG+PKSIVSDR+K+F+S
Subjt:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS

Query:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRRN
        HFW EMF L+ TKL+RS++YHPQ++GQTEVVN+ VEAYLRCFCGE+ R+
Subjt:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRRN

TYK16931.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.2e-6377.85Show/hide
Query:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS
        M CQ NK+ ALSPAGLL+PLEIPD IWS+ISMDFI+GLPKS G EVILVVVDRLSKY HF+ LKHPYTAKTVA+ FVKEVV+LHG+PKSIVSDR+K+FLS
Subjt:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS

Query:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRRN
        HFW EMF L+ TKL+RS++YHPQ++GQTEVVN+ VEAYLRCFCGE+ R+
Subjt:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRRN

TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]9.4e-6377.18Show/hide
Query:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS
        M CQ NK+ ALSPAGLL+PLEIPD IWS+ISMDFI+GLPKS G EVILVVVDRLSKY HF+ LKHPYTAKTVA+ FVKEVV+LHG+PKSIVSDR+K+F+S
Subjt:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS

Query:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRRN
        HFW EMF L+ TKL+RS++YHPQ++GQTEVVN+ VEAYLRCFCGE+ R+
Subjt:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRRN

TrEMBL top hitse value%identityAlignment
A0A5A7U2S1 Ty3/gypsy retrotransposon protein4.5e-6377.18Show/hide
Query:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS
        M CQ NK+ ALSPAGLL+PLEIPD IWS+ISMDFI+GLPKS G EVILVVVDRLSKY HF+ LKHPYTAKTVA+ FVKEVV+LHG+PKSIVSDR+K+F+S
Subjt:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS

Query:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRRN
        HFW EMF L+ TKL+RS++YHPQ++GQTEVVN+ VEAYLRCFCGE+ R+
Subjt:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRRN

A0A5A7U8A5 Putative retroelement pol polyprotein4.5e-6377.7Show/hide
Query:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS
        M CQ NK+ ALSP GLL+PLEIPD IWS+ISMDFI+GLPKS G EVILVVVDRLSKY HF+ LKHPYTAKTVA+ FVKE+VKLHG+PKSIVSDR+K+FLS
Subjt:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS

Query:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRR
        HFW EMF L+ TKL+RS++YHPQ++GQTEVVN+ VEAYLRCFCGE+ R
Subjt:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRR

A0A5D3CD19 Peroxidase 642.7e-6379.86Show/hide
Query:  CQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSHF
        CQ NKT ALSPAGLLMPLEIPD IWS+ISMDFI+GLPKSEG +VILVVVDRLSKYGHF+ LKHP+TAK VA+ FVKEV++LHGYP+SIVSDR+KVFLSHF
Subjt:  CQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSHF

Query:  WQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGER
        W+E+F L+ TKL+RS++YHPQS+GQTEVVN+ VE YLRCFCGER
Subjt:  WQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGER

A0A5D3CXB1 Ty3/gypsy retrotransposon protein4.5e-6377.18Show/hide
Query:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS
        M CQ NK+ ALSPAGLL+PLEIPD IWS+ISMDFI+GLPKS G EVILVVVDRLSKY HF+ LKHPYTAKTVA+ FVKEVV+LHG+PKSIVSDR+K+F+S
Subjt:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS

Query:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRRN
        HFW EMF L+ TKL+RS++YHPQ++GQTEVVN+ VEAYLRCFCGE+ R+
Subjt:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRRN

A0A5D3CY75 Ty3/gypsy retrotransposon protein1.6e-6377.85Show/hide
Query:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS
        M CQ NK+ ALSPAGLL+PLEIPD IWS+ISMDFI+GLPKS G EVILVVVDRLSKY HF+ LKHPYTAKTVA+ FVKEVV+LHG+PKSIVSDR+K+FLS
Subjt:  MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLS

Query:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRRN
        HFW EMF L+ TKL+RS++YHPQ++GQTEVVN+ VEAYLRCFCGE+ R+
Subjt:  HFWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRRN

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein7.6e-2338.03Show/hide
Query:  TCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSH
        TCQ NK+    P G L P+   +  W  +SMDFI  LP+S G+  + VVVDR SK    +      TA+  A  F + V+   G PK I++D + +F S 
Subjt:  TCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSH

Query:  FWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFC
         W++     +  +  S  Y PQ++GQTE  N+ VE  LRC C
Subjt:  FWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFC

P0CT35 Transposon Tf2-2 polyprotein7.6e-2338.03Show/hide
Query:  TCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSH
        TCQ NK+    P G L P+   +  W  +SMDFI  LP+S G+  + VVVDR SK    +      TA+  A  F + V+   G PK I++D + +F S 
Subjt:  TCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSH

Query:  FWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFC
         W++     +  +  S  Y PQ++GQTE  N+ VE  LRC C
Subjt:  FWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFC

P0CT36 Transposon Tf2-3 polyprotein7.6e-2338.03Show/hide
Query:  TCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSH
        TCQ NK+    P G L P+   +  W  +SMDFI  LP+S G+  + VVVDR SK    +      TA+  A  F + V+   G PK I++D + +F S 
Subjt:  TCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSH

Query:  FWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFC
         W++     +  +  S  Y PQ++GQTE  N+ VE  LRC C
Subjt:  FWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFC

P0CT41 Transposon Tf2-12 polyprotein7.6e-2338.03Show/hide
Query:  TCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSH
        TCQ NK+    P G L P+   +  W  +SMDFI  LP+S G+  + VVVDR SK    +      TA+  A  F + V+   G PK I++D + +F S 
Subjt:  TCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSH

Query:  FWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFC
         W++     +  +  S  Y PQ++GQTE  N+ VE  LRC C
Subjt:  FWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFC

Q9UR07 Transposon Tf2-11 polyprotein7.6e-2338.03Show/hide
Query:  TCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSH
        TCQ NK+    P G L P+   +  W  +SMDFI  LP+S G+  + VVVDR SK    +      TA+  A  F + V+   G PK I++D + +F S 
Subjt:  TCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSH

Query:  FWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFC
         W++     +  +  S  Y PQ++GQTE  N+ VE  LRC C
Subjt:  FWQEMFWLSDTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFC

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATGTCAACACAACAAAACACTAGCCTTATCTCCTGCGGGTTTACTCATGCCATTGGAAATTCCAGATACAATTTGGAGTGAGATATCTATGGATTTTATTGATGG
TCTACCGAAATCTGAAGGACATGAGGTCATATTGGTTGTTGTCGATAGGCTGAGTAAGTATGGTCACTTTATTGCTTTGAAACATCCTTACACTGCAAAGACCGTGGCTG
ATGCTTTTGTTAAAGAGGTAGTTAAGTTACATGGCTATCCTAAATCTATAGTTTCTGATCGTAACAAAGTCTTTTTGAGTCATTTTTGGCAAGAGATGTTTTGGCTGTCA
GATACAAAACTGAGCAGAAGTACAGCTTATCATCCTCAATCTAATGGACAGACAGAGGTAGTCAATAGAGGAGTGGAAGCTTATTTGCGTTGTTTTTGTGGTGAGAGACG
AAGGAATGGTTGCGTTGGCTGCATTGGGCCGAGTATTGGTATAATACTACGTACCCACGGTCTATTGGCATCACTCCTTTTCAAACAGTGTATGGTCGACTTCCCCCACC
GCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACATGTCAACACAACAAAACACTAGCCTTATCTCCTGCGGGTTTACTCATGCCATTGGAAATTCCAGATACAATTTGGAGTGAGATATCTATGGATTTTATTGATGG
TCTACCGAAATCTGAAGGACATGAGGTCATATTGGTTGTTGTCGATAGGCTGAGTAAGTATGGTCACTTTATTGCTTTGAAACATCCTTACACTGCAAAGACCGTGGCTG
ATGCTTTTGTTAAAGAGGTAGTTAAGTTACATGGCTATCCTAAATCTATAGTTTCTGATCGTAACAAAGTCTTTTTGAGTCATTTTTGGCAAGAGATGTTTTGGCTGTCA
GATACAAAACTGAGCAGAAGTACAGCTTATCATCCTCAATCTAATGGACAGACAGAGGTAGTCAATAGAGGAGTGGAAGCTTATTTGCGTTGTTTTTGTGGTGAGAGACG
AAGGAATGGTTGCGTTGGCTGCATTGGGCCGAGTATTGGTATAATACTACGTACCCACGGTCTATTGGCATCACTCCTTTTCAAACAGTGTATGGTCGACTTCCCCCACC
GCTAA
Protein sequenceShow/hide protein sequence
MTCQHNKTLALSPAGLLMPLEIPDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFIALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSHFWQEMFWLS
DTKLSRSTAYHPQSNGQTEVVNRGVEAYLRCFCGERRRNGCVGCIGPSIGIILRTHGLLASLLFKQCMVDFPHR