; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc05g0129171 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc05g0129171
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy1-copia retrotransposon protein
Genome locationCMiso1.1chr05:6866069..6867139
RNA-Seq ExpressionCmc05g0129171
SyntenyCmc05g0129171
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR036397 - Ribonuclease H superfamily
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036643.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.9e-15392.15Show/hide
Query:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI
        MN MLLSSGLSDNMWG+AVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVP PALKKTTVG KTFDCIFIGYAQNSAAY FMCLNDKTI
Subjt:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI

Query:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK
        NESRDAEFFEHVFPLKQSLYAPSLS RMHDPE   IVSE PVSE VDT +L CEL+ +RSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNL+LI+ED K
Subjt:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK

Query:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR
        TYQEALNSVDS MWKEAIKSELDSL MNHTWELVDLPMGNKPIRCKWI KRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR
Subjt:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR

KAA0038001.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.5e-14990.21Show/hide
Query:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI
        MN MLLSSGLSDN+WG+ VLSACF+LNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVP+PALKK+TVGSKTFDCIFIGYAQNS AY FMCLNDKTI
Subjt:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI

Query:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK
        NESRDAEFFEHVF LKQSLYAPSLSKRMHDPEN SIVSET VSE V+TS+LRCEL+L+RSKRQRTEKSF PDFLSTFIVERRDEID NFTNLYLIDEDPK
Subjt:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK

Query:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPV
        TYQE LNSV+ SMWKEAIKSELDSLVMNHTW+LVDLPMGNKPIRC+WI KRKTKPNG +ERYKARLVVVGYTQKQG+DYFDTYSPV
Subjt:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPV

TYJ97996.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.6e-14391.91Show/hide
Query:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI
        MN MLLSSGLS+NMWG+AVLSA F+LNRIPHKRLDKTPYELWKGHAP LSYLKVWGCLAKVP+PALKK+TVGSKTFDCIFI YAQNS AY FMC NDKTI
Subjt:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI

Query:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK
        NESRDAEFFEHVFPLKQSL APSLSKRMHDPENPSIVSETPVSETV+TS+LRCEL+L RSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK
Subjt:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK

Query:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYT
        TYQEALNSV+SSMWKEAIKSELDSLVMNHTW+LVDLPMGNKPIRCKWI KRKTKPNG IERYK RLVVVGYT
Subjt:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYT

TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.3e-18892.98Show/hide
Query:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI
        MN MLLSSGLSDNMWG+AVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVP PALKKTTVG KTFDCIFIGYAQNSAAY FMCLNDKTI
Subjt:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI

Query:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK
        NESRDAEFFEHVFPLKQSLYAPSLS RMHDPE   IVSE PVSETVDT +L CEL+ +RSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNL+LIDEDPK
Subjt:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK

Query:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALVA
        TYQEALNSVDS MWKEAIKSELDSL MNHTWELVDLPMGNKPIRCKWI KRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIAL A
Subjt:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALVA

Query:  IHNLLIYQMDVKTAFLNVDLEEEIYMTQPEGFKISGQENKVCKLKKSLYGLKQAPK
        IHNLLI+QMDVKTAFLN +LEEEIYMTQPEGFKISGQENKVCKL+KSLYGLKQAPK
Subjt:  IHNLLIYQMDVKTAFLNVDLEEEIYMTQPEGFKISGQENKVCKLKKSLYGLKQAPK

TYK12176.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.1e-13193.5Show/hide
Query:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI
        MN MLL+SGLSDNMWG+ VLSACFILNRIPHKRL+KTPYELWK HA NLSYLKVWGCLAKVP+PALKKTT+GSKTFDCIFIGY QNSAAY FMCLNDKTI
Subjt:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI

Query:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK
        NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTS+LRCEL+L+RSKRQRTEKSFG DFLSTFIVE+RDEIDCNFTNLYLIDEDPK
Subjt:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK

Query:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCK
        TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCK
Subjt:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCK

TrEMBL top hitse value%identityAlignment
A0A5A7T166 Ty1-copia retrotransposon protein1.4e-15392.15Show/hide
Query:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI
        MN MLLSSGLSDNMWG+AVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVP PALKKTTVG KTFDCIFIGYAQNSAAY FMCLNDKTI
Subjt:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI

Query:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK
        NESRDAEFFEHVFPLKQSLYAPSLS RMHDPE   IVSE PVSE VDT +L CEL+ +RSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNL+LI+ED K
Subjt:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK

Query:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR
        TYQEALNSVDS MWKEAIKSELDSL MNHTWELVDLPMGNKPIRCKWI KRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR
Subjt:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR

A0A5A7T8N6 Ty1-copia retrotransposon protein7.3e-15090.21Show/hide
Query:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI
        MN MLLSSGLSDN+WG+ VLSACF+LNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVP+PALKK+TVGSKTFDCIFIGYAQNS AY FMCLNDKTI
Subjt:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI

Query:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK
        NESRDAEFFEHVF LKQSLYAPSLSKRMHDPEN SIVSET VSE V+TS+LRCEL+L+RSKRQRTEKSF PDFLSTFIVERRDEID NFTNLYLIDEDPK
Subjt:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK

Query:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPV
        TYQE LNSV+ SMWKEAIKSELDSLVMNHTW+LVDLPMGNKPIRC+WI KRKTKPNG +ERYKARLVVVGYTQKQG+DYFDTYSPV
Subjt:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPV

A0A5D3BFX4 Ty1-copia retrotransposon protein1.7e-14391.91Show/hide
Query:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI
        MN MLLSSGLS+NMWG+AVLSA F+LNRIPHKRLDKTPYELWKGHAP LSYLKVWGCLAKVP+PALKK+TVGSKTFDCIFI YAQNS AY FMC NDKTI
Subjt:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI

Query:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK
        NESRDAEFFEHVFPLKQSL APSLSKRMHDPENPSIVSETPVSETV+TS+LRCEL+L RSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK
Subjt:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK

Query:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYT
        TYQEALNSV+SSMWKEAIKSELDSLVMNHTW+LVDLPMGNKPIRCKWI KRKTKPNG IERYK RLVVVGYT
Subjt:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYT

A0A5D3C5T2 Ty1-copia retrotransposon protein6.1e-18992.98Show/hide
Query:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI
        MN MLLSSGLSDNMWG+AVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVP PALKKTTVG KTFDCIFIGYAQNSAAY FMCLNDKTI
Subjt:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI

Query:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK
        NESRDAEFFEHVFPLKQSLYAPSLS RMHDPE   IVSE PVSETVDT +L CEL+ +RSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNL+LIDEDPK
Subjt:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK

Query:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALVA
        TYQEALNSVDS MWKEAIKSELDSL MNHTWELVDLPMGNKPIRCKWI KRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIAL A
Subjt:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALVA

Query:  IHNLLIYQMDVKTAFLNVDLEEEIYMTQPEGFKISGQENKVCKLKKSLYGLKQAPK
        IHNLLI+QMDVKTAFLN +LEEEIYMTQPEGFKISGQENKVCKL+KSLYGLKQAPK
Subjt:  IHNLLIYQMDVKTAFLNVDLEEEIYMTQPEGFKISGQENKVCKLKKSLYGLKQAPK

A0A5D3CP43 Ty1-copia retrotransposon protein1.5e-13193.5Show/hide
Query:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI
        MN MLL+SGLSDNMWG+ VLSACFILNRIPHKRL+KTPYELWK HA NLSYLKVWGCLAKVP+PALKKTT+GSKTFDCIFIGY QNSAAY FMCLNDKTI
Subjt:  MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI

Query:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK
        NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTS+LRCEL+L+RSKRQRTEKSFG DFLSTFIVE+RDEIDCNFTNLYLIDEDPK
Subjt:  NESRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPK

Query:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCK
        TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCK
Subjt:  TYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCK

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.0e-3928.98Show/hide
Query:  MLLSSGLSDNMWGKAVLSACFILNRIPHKRL---DKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI
        M+  + L  + WG+AVL+A +++NRIP + L    KTPYE+W    P L +L+V+G    V +   K+     K+F  IF+GY  N    L+  +N+K I
Subjt:  MLLSSGLSDNMWGKAVLSACFILNRIPHKRL---DKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTI

Query:  -------------------------------------------------NESRDAEFFEHVFPLKQS--LYAPSLSKRMHDPENPSIVSETPVSETVDTS
                                                         NES++ +  + +   K+S     P+ S+++   E P+   E    + +  S
Subjt:  -------------------------------------------------NESRDAEFFEHVFPLKQS--LYAPSLSKRMHDPENPSIVSETPVSETVDTS

Query:  DLRCELKLKRSKRQRTE------------------------KSFGPDFLS----TFIVERRDE----------------IDCNFTNLYLIDED-PKTYQE
            +  L  SK+++ +                        K  G D  +      I+ RR E                ++    N + I  D P ++ E
Subjt:  DLRCELKLKRSKRQRTE------------------------KSFGPDFLS----TFIVERRDE----------------IDCNFTNLYLIDED-PKTYQE

Query:  ALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALVAIHNL
             D S W+EAI +EL++  +N+TW +   P     +  +W+   K    G   RYKARLV  G+TQK  +DY +T++PV +I++ R +++LV  +NL
Subjt:  ALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALVAIHNL

Query:  LIYQMDVKTAFLNVDLEEEIYMTQPEGFKISGQENKVCKLKKSLYGLKQAPK
         ++QMDVKTAFLN  L+EEIYM  P+G  IS   + VCKL K++YGLKQA +
Subjt:  LIYQMDVKTAFLNVDLEEEIYMTQPEGFKISGQENKVCKLKKSLYGLKQAPK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-5535.2Show/hide
Query:  MLLSSGLSDNMWGKAVLSACFILNRIPHKRLD-KTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTINE
        ML  + L  + WG+AV +AC+++NR P   L  + P  +W     + S+LKV+GC A    P  ++T +  K+  CIFIGY      Y       K +  
Subjt:  MLLSSGLSDNMWGKAVLSACFILNRIPHKRLD-KTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTINE

Query:  SRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIV-----SETPVSETVDTSDLRCE-----------LKLKRSKRQRTEKSFGPDFLSTFIVERRDEID
        SRD  F E      +   A  +S+++ +   P+ V     S  P S    T ++  +            +L     +    + G +         R  ++
Subjt:  SRDAEFFEHVFPLKQSLYAPSLSKRMHDPENPSIV-----SETPVSETVDTSDLRCE-----------LKLKRSKRQRTEKSFGPDFLSTFIVERRDEID

Query:  CN---FTNLYLI--DEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFD
              T   LI  D +P++ +E L+  + +   +A++ E++SL  N T++LV+LP G +P++CKW+ K K   +  + RYKARLVV G+ QK+G+D+ +
Subjt:  CN---FTNLYLI--DEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFD

Query:  TYSPVTKITTIRALIALVAIHNLLIYQMDVKTAFLNVDLEEEIYMTQPEGFKISGQENKVCKLKKSLYGLKQAPK
         +SPV K+T+IR +++L A  +L + Q+DVKTAFL+ DLEEEIYM QPEGF+++G+++ VCKL KSLYGLKQAP+
Subjt:  TYSPVTKITTIRALIALVAIHNLLIYQMDVKTAFLNVDLEEEIYMTQPEGFKISGQENKVCKLKKSLYGLKQAPK

P92520 Uncharacterized mitochondrial protein AtMg008201.1e-1439.22Show/hide
Query:  IDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRA
        I ++PK+   AL       W +A++ ELD+L  N TW LV  P+    + CKW+ K K   +G ++R KARLV  G+ Q++G+ + +TYSPV +  TIR 
Subjt:  IDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRA

Query:  LI
        ++
Subjt:  LI

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.7e-3142.59Show/hide
Query:  DEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPI-RCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRA
        + +P+T   A+ ++    W+ A+ SE+++ + NHTW+LV  P  +  I  C+WI  +K   +G + RYKARLV  GY Q+ G+DY +T+SPV K T+IR 
Subjt:  DEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPI-RCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRA

Query:  LIALVAIHNLLIYQMDVKTAFLNVDLEEEIYMTQPEGFKISGQENKVCKLKKSLYGLKQAPK
        ++ +    +  I Q+DV  AFL   L +++YM+QP GF    + N VCKL+K+LYGLKQAP+
Subjt:  LIALVAIHNLLIYQMDVKTAFLNVDLEEEIYMTQPEGFKISGQENKVCKLKKSLYGLKQAPK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.1e-3041.36Show/hide
Query:  DEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPI-RCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRA
        + +P+T   A+ ++    W++A+ SE+++ + NHTW+LV  P  +  I  C+WI  +K   +G + RYKARLV  GY Q+ G+DY +T+SPV K T+IR 
Subjt:  DEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPI-RCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRA

Query:  LIALVAIHNLLIYQMDVKTAFLNVDLEEEIYMTQPEGFKISGQENKVCKLKKSLYGLKQAPK
        ++ +    +  I Q+DV  AFL   L +E+YM+QP GF    + + VC+L+K++YGLKQAP+
Subjt:  LIALVAIHNLLIYQMDVKTAFLNVDLEEEIYMTQPEGFKISGQENKVCKLKKSLYGLKQAPK

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.5e-3846.95Show/hide
Query:  EDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALI
        ++P TY EA   +   +W  A+  E+ ++   HTWE+  LP   KPI CKW+ K K   +G IERYKARLV  GYTQ++G+D+ +T+SPV K+T+++ ++
Subjt:  EDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALI

Query:  ALVAIHNLLIYQMDVKTAFLNVDLEEEIYMTQPEGFKI----SGQENKVCKLKKSLYGLKQAPK
        A+ AI+N  ++Q+D+  AFLN DL+EEIYM  P G+      S   N VC LKKS+YGLKQA +
Subjt:  ALVAIHNLLIYQMDVKTAFLNVDLEEEIYMTQPEGFKI----SGQENKVCKLKKSLYGLKQAPK

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)8.0e-1639.22Show/hide
Query:  IDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRA
        I ++PK+   AL       W +A++ ELD+L  N TW LV  P+    + CKW+ K K   +G ++R KARLV  G+ Q++G+ + +TYSPV +  TIR 
Subjt:  IDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRA

Query:  LI
        ++
Subjt:  LI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTCATGTTATTAAGCTCCGGCCTATCTGATAATATGTGGGGGAAAGCCGTGTTGTCTGCGTGTTTTATTCTTAACAGGATTCCCCACAAAAGGCTAGAC
AAAACTCCATACGAACTCTGGAAAGGACATGCACCAAATCTTTCCTACCTGAAGGTCTGGGGATGCTTGGCTAAGGTACCATATCCTGCATTGAAGAAAACTACG
GTAGGATCTAAAACCTTTGACTGCATTTTTATCGGGTATGCTCAAAATAGTGCTGCATATTTGTTTATGTGTTTAAATGACAAAACTATAAACGAATCTAGAGAT
GCAGAATTCTTTGAGCATGTTTTTCCGTTAAAACAATCATTGTATGCTCCTAGCCTATCTAAAAGAATGCATGATCCTGAAAACCCTTCAATCGTTAGTGAAACA
CCTGTTTCTGAAACTGTTGATACTTCAGACCTAAGATGTGAATTAAAACTTAAGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGC
ACCTTCATAGTGGAAAGGCGTGATGAAATTGACTGTAACTTCACAAACTTGTACTTAATAGATGAGGATCCCAAAACTTACCAAGAAGCGCTAAACTCTGTAGAT
TCAAGTATGTGGAAAGAGGCCATTAAAAGTGAATTGGACTCACTGGTCATGAATCATACATGGGAACTAGTGGACCTTCCTATGGGAAACAAGCCAATTAGATGT
AAGTGGATATTGAAAAGAAAAACAAAACCAAATGGATTAATAGAAAGATACAAAGCTAGATTAGTGGTAGTAGGATATACCCAGAAACAAGGTGTTGACTATTTT
GACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGCCTTGATTGCATTGGTCGCAATACATAACCTTCTTATTTACCAAATGGACGTAAAAACAGCCTTT
TTAAATGTTGACCTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACTGAAAAAGTCCCTATACGGT
CTCAAGCAAGCTCCCAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGTCATGTTATTAAGCTCCGGCCTATCTGATAATATGTGGGGGAAAGCCGTGTTGTCTGCGTGTTTTATTCTTAACAGGATTCCCCACAAAAGGCTAGAC
AAAACTCCATACGAACTCTGGAAAGGACATGCACCAAATCTTTCCTACCTGAAGGTCTGGGGATGCTTGGCTAAGGTACCATATCCTGCATTGAAGAAAACTACG
GTAGGATCTAAAACCTTTGACTGCATTTTTATCGGGTATGCTCAAAATAGTGCTGCATATTTGTTTATGTGTTTAAATGACAAAACTATAAACGAATCTAGAGAT
GCAGAATTCTTTGAGCATGTTTTTCCGTTAAAACAATCATTGTATGCTCCTAGCCTATCTAAAAGAATGCATGATCCTGAAAACCCTTCAATCGTTAGTGAAACA
CCTGTTTCTGAAACTGTTGATACTTCAGACCTAAGATGTGAATTAAAACTTAAGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGC
ACCTTCATAGTGGAAAGGCGTGATGAAATTGACTGTAACTTCACAAACTTGTACTTAATAGATGAGGATCCCAAAACTTACCAAGAAGCGCTAAACTCTGTAGAT
TCAAGTATGTGGAAAGAGGCCATTAAAAGTGAATTGGACTCACTGGTCATGAATCATACATGGGAACTAGTGGACCTTCCTATGGGAAACAAGCCAATTAGATGT
AAGTGGATATTGAAAAGAAAAACAAAACCAAATGGATTAATAGAAAGATACAAAGCTAGATTAGTGGTAGTAGGATATACCCAGAAACAAGGTGTTGACTATTTT
GACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGCCTTGATTGCATTGGTCGCAATACATAACCTTCTTATTTACCAAATGGACGTAAAAACAGCCTTT
TTAAATGTTGACCTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACTGAAAAAGTCCCTATACGGT
CTCAAGCAAGCTCCCAAGTAG
Protein sequenceShow/hide protein sequence
MNVMLLSSGLSDNMWGKAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPYPALKKTTVGSKTFDCIFIGYAQNSAAYLFMCLNDKTINESRD
AEFFEHVFPLKQSLYAPSLSKRMHDPENPSIVSETPVSETVDTSDLRCELKLKRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVD
SSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWILKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALVAIHNLLIYQMDVKTAF
LNVDLEEEIYMTQPEGFKISGQENKVCKLKKSLYGLKQAPK