CuGenDBv2

Gene ID	Cmc05g0129531
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr05:7498454..7499116
RNA-Seq Expression	Cmc05g0129531
Synteny	Cmc05g0129531
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR025724 - GAG-pre-integrase domain IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ADJ18449.1 gag/pol protein, partial [Bryonia dioica]

2.6e-91

76.58

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Query:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK
        ++SA+ V DL LFF DRY++LK+VLY P MKRNLIS +CILEH+Y I FE+NE FI  KGI +CSAI E+NLYKLRPTRAN VLNTEMFR  +TQNK QK
Subjt:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK

Query:  VSSNAFLWHLRLGHI--NRIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVY
        VSSNA+LWHLRLGHI  NRI RLVKSG+L+QLEDNSLPPC+ C+EGKMTK SFT KGLRAK PLELVHSDLCGPMNVK R G+E F SFIDD+SRYGHVY
Subjt:  VSSNAFLWHLRLGHI--NRIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVY

Query:  LIQNKSDSFEKFKEYKAEVENE
        L+ +KS+SFEKFKEYKAEVENE
Subjt:  LIQNKSDSFEKFKEYKAEVENE

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

3.3e-78

65.02

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Query:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK
        +ISA+ V D KLFF ++++ L+N+   P++KRNL+S SC++EHMY I F +NEAFI+  G+H+CSA LE+NLY LRP  A  VLN EMFR A+TQNK Q+
Subjt:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK

Query:  VS--SNAFLWHLRLGHIN--RIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGH
        +S  +N +LWHLRLGHIN  RIGRLVK+GLL++L+D SLPPC+ C+EGKMTK  FT KG RAK PLEL+HSDLCGPMNVK R GFE F SFIDDYSRYG+
Subjt:  VS--SNAFLWHLRLGHIN--RIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGH

Query:  VYLIQNKSDSFEKFKEYKAEVEN
        +YL+++KS++ EKFKEYK EVEN
Subjt:  VYLIQNKSDSFEKFKEYKAEVEN

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-77

64.57

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Query:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK
        +ISA+ V D KLFF ++++ L+N+   P++KRNL+S SC++EHMY I F +NEAFI+  G+H+CSA LE+NLY LRP  A  VLN EMFR A+TQNK Q+
Subjt:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK

Query:  VS--SNAFLWHLRLGHIN--RIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGH
        +S  +N +LWHLRLGHIN  RIGRLVK GLL++L+D SLPPC+ C+EGKMTK  FT KG RAK PLEL+HSDLCGPMNVK R  FE F SFIDDYSRYG+
Subjt:  VS--SNAFLWHLRLGHIN--RIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGH

Query:  VYLIQNKSDSFEKFKEYKAEVEN
        +YL+++KS++ EKFKEYK EVEN
Subjt:  VYLIQNKSDSFEKFKEYKAEVEN

KAA0050872.1 gag/pol protein [Cucumis melo var. makuwa]

1.5e-78

72.52

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Query:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK
        M+SAK V DLKLFFNDRYI+ KNVLYAPQMKRNLIS SC+LE MY+I FEINEAFIF K                                A TQNK QK
Subjt:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK

Query:  VSSNAFLWHLRLGHI--NRIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVY
        VS NAFLWHLRLGHI  N IGRLVKSGLLSQLEDNSLPPCD C+EGKMT+ SFTRKGLRAKTPLELVHSDLCGPMNVK R G++ F SFID+YSRYGHVY
Subjt:  VSSNAFLWHLRLGHI--NRIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVY

Query:  LIQNKSDSFEKFKEYKAEVENE
        LIQNK DSFEKFKEYKAEVENE
Subjt:  LIQNKSDSFEKFKEYKAEVENE

TYK08480.1 gag/pol protein [Cucumis melo var. makuwa]

1.5e-78

72.52

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Query:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK
        M+SAK V DLKLFFNDRYI+ KNVLYAPQMKRNLIS SC+LE MY+I FEINEAFIF K                                A TQNK QK
Subjt:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK

Query:  VSSNAFLWHLRLGHI--NRIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVY
        VS NAFLWHLRLGHI  N IGRLVKSGLLSQLEDNSLPPCD C+EGKMT+ SFTRKGLRAKTPLELVHSDLCGPMNVK R G++ F SFID+YSRYGHVY
Subjt:  VSSNAFLWHLRLGHI--NRIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVY

Query:  LIQNKSDSFEKFKEYKAEVENE
        LIQNK DSFEKFKEYKAEVENE
Subjt:  LIQNKSDSFEKFKEYKAEVENE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2V9 Gag/pol protein

1.0e-77

64.57

Show/hide

Query:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK
        +ISA+ V D KLFF ++++ L+N+   P++KRNL+S SC++EHMY I F +NEAFI+  G+H+CSA LE+NLY LRP  A  VLN EMFR A+TQNK Q+
Subjt:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK

Query:  VS--SNAFLWHLRLGHIN--RIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGH
        +S  +N +LWHLRLGHIN  RIGRLVK GLL++L+D SLPPC+ C+EGKMTK  FT KG RAK PLEL+HSDLCGPMNVK R  FE F SFIDDYSRYG+
Subjt:  VS--SNAFLWHLRLGHIN--RIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGH

Query:  VYLIQNKSDSFEKFKEYKAEVEN
        +YL+++KS++ EKFKEYK EVEN
Subjt:  VYLIQNKSDSFEKFKEYKAEVEN

A0A5A7TZD0 Gag/pol protein

1.6e-78

65.02

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Query:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK
        +ISA+ V D KLFF ++++ L+N+   P++KRNL+S SC++EHMY I F +NEAFI+  G+H+CSA LE+NLY LRP  A  VLN EMFR A+TQNK Q+
Subjt:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK

Query:  VS--SNAFLWHLRLGHIN--RIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGH
        +S  +N +LWHLRLGHIN  RIGRLVK+GLL++L+D SLPPC+ C+EGKMTK  FT KG RAK PLEL+HSDLCGPMNVK R GFE F SFIDDYSRYG+
Subjt:  VS--SNAFLWHLRLGHIN--RIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGH

Query:  VYLIQNKSDSFEKFKEYKAEVEN
        +YL+++KS++ EKFKEYK EVEN
Subjt:  VYLIQNKSDSFEKFKEYKAEVEN

A0A5A7U4V3 Gag/pol protein

7.1e-79

72.52

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Query:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK
        M+SAK V DLKLFFNDRYI+ KNVLYAPQMKRNLIS SC+LE MY+I FEINEAFIF K                                A TQNK QK
Subjt:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK

Query:  VSSNAFLWHLRLGHI--NRIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVY
        VS NAFLWHLRLGHI  N IGRLVKSGLLSQLEDNSLPPCD C+EGKMT+ SFTRKGLRAKTPLELVHSDLCGPMNVK R G++ F SFID+YSRYGHVY
Subjt:  VSSNAFLWHLRLGHI--NRIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVY

Query:  LIQNKSDSFEKFKEYKAEVENE
        LIQNK DSFEKFKEYKAEVENE
Subjt:  LIQNKSDSFEKFKEYKAEVENE

A0A5D3CAW3 Gag/pol protein

7.1e-79

72.52

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Query:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK
        M+SAK V DLKLFFNDRYI+ KNVLYAPQMKRNLIS SC+LE MY+I FEINEAFIF K                                A TQNK QK
Subjt:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK

Query:  VSSNAFLWHLRLGHI--NRIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVY
        VS NAFLWHLRLGHI  N IGRLVKSGLLSQLEDNSLPPCD C+EGKMT+ SFTRKGLRAKTPLELVHSDLCGPMNVK R G++ F SFID+YSRYGHVY
Subjt:  VSSNAFLWHLRLGHI--NRIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVY

Query:  LIQNKSDSFEKFKEYKAEVENE
        LIQNK DSFEKFKEYKAEVENE
Subjt:  LIQNKSDSFEKFKEYKAEVENE

E2GK51 Gag/pol protein (Fragment)

1.2e-91

76.58

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Query:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK
        ++SA+ V DL LFF DRY++LK+VLY P MKRNLIS +CILEH+Y I FE+NE FI  KGI +CSAI E+NLYKLRPTRAN VLNTEMFR  +TQNK QK
Subjt:  MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQK

Query:  VSSNAFLWHLRLGHI--NRIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVY
        VSSNA+LWHLRLGHI  NRI RLVKSG+L+QLEDNSLPPC+ C+EGKMTK SFT KGLRAK PLELVHSDLCGPMNVK R G+E F SFIDD+SRYGHVY
Subjt:  VSSNAFLWHLRLGHI--NRIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVY

Query:  LIQNKSDSFEKFKEYKAEVENE
        L+ +KS+SFEKFKEYKAEVENE
Subjt:  LIQNKSDSFEKFKEYKAEVENE

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

4.5e-14

30.09

Show/hide

Query:  NDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQKVSSNAFLWHLRLGH
        ND  I L++VL+  +   NL+S   + E    I F+ +   I   G+ V   +    +    P     V+N + + I        K  +N  LWH R GH
Subjt:  NDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQKVSSNAFLWHLRLGH

Query:  INRIGRLVKSGLLSQLEDNSL--------PPCDFCIEGKMTKISFTRKGLRAKT----PLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVYLIQN
        I+  G+L++    +   D SL          C+ C+ GK  ++ F  K L+ KT    PL +VHSD+CGP+          F  F+D ++ Y   YLI+ 
Subjt:  INRIGRLVKSGLLSQLEDNSL--------PPCDFCIEGKMTKISFTRKGLRAKT----PLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVYLIQN

Query:  KSDSFEKFKEYKAEVE
        KSD F  F+++ A+ E
Subjt:  KSDSFEKFKEYKAEVE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.5e-22

31.71

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Query:  IMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKG-IHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQKVSSNAFLWHLRLGHINR
        ++LK+V + P ++ NLIS   +    Y+ YF  N+ +   KG + +   +    LY+         LN     I            +  LWH R+GH++ 
Subjt:  IMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKG-IHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQKVSSNAFLWHLRLGHINR

Query:  IGR--LVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVYLIQNKSDSFEKFKEYKA
         G   L K  L+S  +  ++ PCD+C+ GK  ++SF     R    L+LV+SD+CGPM ++   G + F +FIDD SR   VY+++ K   F+ F+++ A
Subjt:  IGR--LVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVYLIQNKSDSFEKFKEYKA

Query:  EVENE
         VE E
Subjt:  EVENE

P93293 Uncharacterized mitochondrial protein AtMg00300

3.7e-08

37.8

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Query:  NKTQKVSSNAFLWHLRLGHINRIGR--LVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNV
        N  +       LWH RL H+++ G   LVK G L   + +SL  C+ CI GK  +++F+      K PL+ VHSDL G  +V
Subjt:  NKTQKVSSNAFLWHLRLGHINRIGR--LVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNV

Arabidopsis top hits

e value

%identity

Alignment

ATMG00300.1 Gag-Pol-related retrotransposon family protein

2.6e-09

37.8

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Query:  NKTQKVSSNAFLWHLRLGHINRIGR--LVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNV
        N  +       LWH RL H+++ G   LVK G L   + +SL  C+ CI GK  +++F+      K PL+ VHSDL G  +V
Subjt:  NKTQKVSSNAFLWHLRLGHINRIGR--LVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATCTCAGCTAAAGTAGTGAGAGACTTAAAGTTGTTTTTTAATGATAGATATATCATGCTCAAGAATGTCTTGTATGCACCTCAAATGAAGAGAAATTTAATATCTTT
CTCTTGTATATTAGAACATATGTACAAAATATATTTTGAAATTAATGAAGCGTTCATTTTTCATAAAGGAATTCATGTTTGTTCTGCTATACTTGAAGACAACTTGTATA
AGTTAAGACCAACACGAGCAAATTTTGTCTTAAATACTGAAATGTTTAGAATAGCTGATACTCAGAATAAAACACAAAAGGTTTCTTCCAATGCCTTTTTATGGCACTTA
AGACTTGGTCACATAAATAGGATTGGGAGATTGGTTAAGAGTGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACCTCCATGTGATTTCTGTATTGAAGGAAAAATGAC
CAAAATATCTTTTACTAGAAAAGGTCTTAGAGCCAAAACACCATTAGAGCTTGTACATTCGGACCTCTGTGGACCAATGAATGTCAAAGATCGGGTAGGATTTGAAAATT
TCACTAGTTTTATTGATGATTATTCAAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAAAATGAA
TAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MISAKVVRDLKLFFNDRYIMLKNVLYAPQMKRNLISFSCILEHMYKIYFEINEAFIFHKGIHVCSAILEDNLYKLRPTRANFVLNTEMFRIADTQNKTQKVSSNAFLWHL
RLGHINRIGRLVKSGLLSQLEDNSLPPCDFCIEGKMTKISFTRKGLRAKTPLELVHSDLCGPMNVKDRVGFENFTSFIDDYSRYGHVYLIQNKSDSFEKFKEYKAEVENE

Cmc05g0129531 (gene) of Melon (Charmono) v1.1 genome