; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc05g0129571 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc05g0129571
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr05:7602261..7602797
RNA-Seq ExpressionCmc05g0129571
SyntenyCmc05g0129571
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.4e-8689.89Show/hide
Query:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP
        MKQ IAEYVDRCLICQQVKPVR R GGFLNPL V EWKWEHITMDFLFGLP TSSGHDGI VIVDRLTKT +FI IK TSTLDQLARLYVDKIVSQYGVP
Subjt:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP

Query:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY
        VSIVS+RDPRFTSKFWPSL K MGTGLKFSTSFHPQ D Q ERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+Y
Subjt:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY

KAA0051348.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-8691.01Show/hide
Query:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP
        MKQ IAEYVDRCLICQQVKPVR R  GFLNPL V EWKWEHITMDFLFGLP TSSGHDGI VIVDRLTKTA+FILIK TSTLDQLARLYVDKIVSQYGVP
Subjt:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP

Query:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY
        VSIVS RDPRFTSKFWPSL K MGTGLKFSTSFHPQ D Q ERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY
Subjt:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.4e-8689.89Show/hide
Query:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP
        MKQ IAEYVDRCLICQQVKPVR R GGFLNPL V EWKWEHITMDFLFGLP TSSGHDGI VIVDRLTKT +FI IK TSTLDQLARLYVDKIVSQYGVP
Subjt:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP

Query:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY
        VSIVS+RDPRFTSKFWPSL K MGTGLKFSTSFHPQ D Q ERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+Y
Subjt:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY

KAA0056425.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-8791.01Show/hide
Query:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP
        MKQ I EYVDRCLICQQVKPVR R GGFLNPL V EWKWEHITMDFLFGLP TSSGHDGI VIVDRLTKTA+FI IKATSTLDQLARLYVDKIVSQYGVP
Subjt:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP

Query:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY
        VSIVS+RDPRFTSKFWPSL K MGTGLKFSTSFHPQ D QFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+Y
Subjt:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY

TYK05214.1 reverse transcriptase [Cucumis melo var. makuwa]3.4e-8689.89Show/hide
Query:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP
        MKQ IAEYVDRCLICQQVKPVR R GGFLNPL V EWKWEHITMDFLFGLP TSSGHDGI VIVDRLTKT +FI IK TSTLDQLARLYVDKIVSQYGVP
Subjt:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP

Query:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY
        VSIVS+RDPRFTSKFWPSL K MGTGLKFSTSFHPQ D Q ERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+Y
Subjt:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY

TrEMBL top hitse value%identityAlignment
A0A5A7U2V7 Reverse transcriptase1.7e-8689.89Show/hide
Query:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP
        MKQ IAEYVDRCLICQQVKPVR R GGFLNPL V EWKWEHITMDFLFGLP TSSGHDGI VIVDRLTKT +FI IK TSTLDQLARLYVDKIVSQYGVP
Subjt:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP

Query:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY
        VSIVS+RDPRFTSKFWPSL K MGTGLKFSTSFHPQ D Q ERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+Y
Subjt:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY

A0A5A7U7T7 Reverse transcriptase5.7e-8791.01Show/hide
Query:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP
        MKQ IAEYVDRCLICQQVKPVR R  GFLNPL V EWKWEHITMDFLFGLP TSSGHDGI VIVDRLTKTA+FILIK TSTLDQLARLYVDKIVSQYGVP
Subjt:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP

Query:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY
        VSIVS RDPRFTSKFWPSL K MGTGLKFSTSFHPQ D Q ERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY
Subjt:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY

A0A5A7USD5 DNA/RNA polymerases superfamily protein8.8e-8891.01Show/hide
Query:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP
        MKQ I EYVDRCLICQQVKPVR R GGFLNPL V EWKWEHITMDFLFGLP TSSGHDGI VIVDRLTKTA+FI IKATSTLDQLARLYVDKIVSQYGVP
Subjt:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP

Query:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY
        VSIVS+RDPRFTSKFWPSL K MGTGLKFSTSFHPQ D QFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+Y
Subjt:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY

A0A5D3BHI1 Reverse transcriptase1.7e-8689.89Show/hide
Query:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP
        MKQ IAEYVDRCLICQQVKPVR R GGFLNPL V EWKWEHITMDFLFGLP TSSGHDGI VIVDRLTKT +FI IK TSTLDQLARLYVDKIVSQYGVP
Subjt:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP

Query:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY
        VSIVS+RDPRFTSKFWPSL K MGTGLKFSTSFHPQ D Q ERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+Y
Subjt:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY

A0A5D3BS67 Reverse transcriptase1.7e-8689.89Show/hide
Query:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP
        MKQ IAEYVDRCLICQQVKPVR R GGFLNPL V EWKWEHITMDFLFGLP TSSGHDGI VIVDRLTKT +FI IK TSTLDQLARLYVDKIVSQYGVP
Subjt:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP

Query:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY
        VSIVS+RDPRFTSKFWPSL K MGTGLKFSTSFHPQ D Q ERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+Y
Subjt:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein8.4e-2735.03Show/hide
Query:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP
        +++ I EYV  C  CQ  K    +  G L P+  SE  WE ++MDF+  LP  SSG++ + V+VDR +K A  +    + T +Q AR++  ++++ +G P
Subjt:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP

Query:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNS
          I+++ D  FTS+ W          +KFS  + PQ D Q ERT QT+E +LR        +W  H+ L++ +YNN+
Subjt:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNS

P0CT41 Transposon Tf2-12 polyprotein8.4e-2735.03Show/hide
Query:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP
        +++ I EYV  C  CQ  K    +  G L P+  SE  WE ++MDF+  LP  SSG++ + V+VDR +K A  +    + T +Q AR++  ++++ +G P
Subjt:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP

Query:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNS
          I+++ D  FTS+ W          +KFS  + PQ D Q ERT QT+E +LR        +W  H+ L++ +YNN+
Subjt:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNS

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.3e-3242.37Show/hide
Query:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP
        ++ +I +Y+  C+ CQ +K  R RL G L PL ++E +W  I+MDF+ GLP TS+  + ILV+VDR +K A FI  + T    QL  L    I S +G P
Subjt:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP

Query:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNS
         +I S+RD R T+  +  L K +G     S++ HPQ D Q ERTIQTL  +LRA V     +W  +LP +EF YN++
Subjt:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNS

Q99315 Transposon Ty3-G Gag-Pol polyprotein3.9e-3241.81Show/hide
Query:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP
        ++ +I +Y+  C+ CQ +K  R RL G L PL ++E +W  I+MDF+ GLP TS+  + ILV+VDR +K A FI  + T    QL  L    I S +G P
Subjt:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP

Query:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNS
         +I S+RD R T+  +  L K +G     S++ HPQ D Q ERTIQTL  +LRA       +W  +LP +EF YN++
Subjt:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNS

Q9UR07 Transposon Tf2-11 polyprotein8.4e-2735.03Show/hide
Query:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP
        +++ I EYV  C  CQ  K    +  G L P+  SE  WE ++MDF+  LP  SSG++ + V+VDR +K A  +    + T +Q AR++  ++++ +G P
Subjt:  MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVP

Query:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNS
          I+++ D  FTS+ W          +KFS  + PQ D Q ERT QT+E +LR        +W  H+ L++ +YNN+
Subjt:  VSIVSNRDPRFTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAAGCGATAGCTGAATATGTTGATAGATGTTTGATTTGTCAACAGGTTAAACCAGTAAGACTGAGGCTAGGAGGATTTCTTAATCCTTTGCTAGTGTCAGAGTG
GAAATGGGAGCATATTACTATGGATTTTCTATTTGGATTACCTTGTACATCTAGTGGACATGATGGTATATTGGTAATAGTAGACAGACTCACCAAGACGGCACAATTTA
TATTGATTAAAGCAACATCTACGTTAGACCAGCTAGCTAGATTATATGTTGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAAATAGGGATCCGAGG
TTTACTTCTAAATTTTGGCCTAGTTTACTGAAAGGAATGGGAACAGGGCTAAAGTTTAGTACATCATTTCATCCCCAAGCAGATAGTCAGTTCGAGAGGACCATCCAAAC
TTTAGAGGACATGTTGAGAGCATGTGTCCTTCAACTTAAAGGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATAGCTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAAGCGATAGCTGAATATGTTGATAGATGTTTGATTTGTCAACAGGTTAAACCAGTAAGACTGAGGCTAGGAGGATTTCTTAATCCTTTGCTAGTGTCAGAGTG
GAAATGGGAGCATATTACTATGGATTTTCTATTTGGATTACCTTGTACATCTAGTGGACATGATGGTATATTGGTAATAGTAGACAGACTCACCAAGACGGCACAATTTA
TATTGATTAAAGCAACATCTACGTTAGACCAGCTAGCTAGATTATATGTTGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAAATAGGGATCCGAGG
TTTACTTCTAAATTTTGGCCTAGTTTACTGAAAGGAATGGGAACAGGGCTAAAGTTTAGTACATCATTTCATCCCCAAGCAGATAGTCAGTTCGAGAGGACCATCCAAAC
TTTAGAGGACATGTTGAGAGCATGTGTCCTTCAACTTAAAGGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATAGCTATTAG
Protein sequenceShow/hide protein sequence
MKQAIAEYVDRCLICQQVKPVRLRLGGFLNPLLVSEWKWEHITMDFLFGLPCTSSGHDGILVIVDRLTKTAQFILIKATSTLDQLARLYVDKIVSQYGVPVSIVSNRDPR
FTSKFWPSLLKGMGTGLKFSTSFHPQADSQFERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSY