CuGenDBv2

Gene ID	Cmc05g0130541
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr05:9031019..9031627
RNA-Seq Expression	Cmc05g0130541
Synteny	Cmc05g0130541
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

1.0e-102

94.55

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
        MSFGLTNAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSF GHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW

Query:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA
         RPSTV EVR+FLGLAGYYRRFVEN SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP GSGSFVIYSDA KKGLGCVLMQQGKVV YA
Subjt:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA

Query:  SR
        SR
Subjt:  SR

KAA0053234.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

9.2e-104

95.05

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
        MSFGLTNAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSF GHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW

Query:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA
         RPSTV EVR+FLGLAGYYRRFVEN SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP GSGSFVIYSDAFKKGLGCVLMQQGKVV YA
Subjt:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA

Query:  SR
        SR
Subjt:  SR

KAA0060217.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

6.0e-103

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
        MSFGLTNAPAVFMDLMNRVFREFL TFMIVFIDDILIYSKTEVEHEEHLRMVLQTLR+NKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW

Query:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA
        PRPSTVGEVRNFLGL GY RRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQ  +   A
Subjt:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA

KAA0062245.1 pol protein [Cucumis melo var. makuwa]

1.7e-102

94.06

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
        MSFGLTNAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSF GHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW

Query:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA
         RPST+ EVR+FLGLAGYYRRFVEN SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP GSGSFVIYSDA KKGLGCVLMQQGKVV YA
Subjt:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA

Query:  SR
        SR
Subjt:  SR

KAA0062265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.7e-103

94.55

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
        MSFGLTNAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSF GHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW

Query:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA
         +PSTV EVR+FLGLAGYYRRFVEN SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP GSGSFVIYSDAFKKGLGCVLMQQGKVV YA
Subjt:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA

Query:  SR
        SR
Subjt:  SR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T190 Reverse transcriptase

8.4e-103

94.55

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
        MSFGLTNAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKF KCEFWLKQVSF GHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW

Query:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA
         RPSTV EVR+FLGLAGYYRRFVEN SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP GSGSFVIYSDA KKGLGCVLMQQGKVV YA
Subjt:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA

Query:  SR
        SR
Subjt:  SR

A0A5A7U330 Reverse transcriptase

4.9e-103

94.55

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
        MSFGLTNAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSF GHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW

Query:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA
         RPSTV EVR+FLGLAGYYRRFVEN SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP GSGSFVIYSDA KKGLGCVLMQQGKVV YA
Subjt:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA

Query:  SR
        SR
Subjt:  SR

A0A5A7UDB1 Reverse transcriptase

4.5e-104

95.05

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
        MSFGLTNAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSF GHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW

Query:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA
         RPSTV EVR+FLGLAGYYRRFVEN SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP GSGSFVIYSDAFKKGLGCVLMQQGKVV YA
Subjt:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA

Query:  SR
        SR
Subjt:  SR

A0A5A7V8N8 Ty3-gypsy retrotransposon protein

1.3e-103

94.55

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
        MSFGLTNAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSF GHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW

Query:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA
         +PSTV EVR+FLGLAGYYRRFVEN SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP GSGSFVIYSDAFKKGLGCVLMQQGKVV YA
Subjt:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA

Query:  SR
        SR
Subjt:  SR

A0A5D3DDC1 Ty3-gypsy retrotransposon protein

2.9e-103

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
        MSFGLTNAPAVFMDLMNRVFREFL TFMIVFIDDILIYSKTEVEHEEHLRMVLQTLR+NKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW

Query:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA
        PRPSTVGEVRNFLGL GY RRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQ  +   A
Subjt:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYA

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

5.5e-35

37.93

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
        M FGL NAPA F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    L  +  KCEF  ++ +F GHV++  G+  +P KIEA+ ++
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW

Query:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTY
        P P+   E++ FLGL GYYR+F+ N + IA P+T+  +K      +    DS F+ LK  +   P+L VP  +  F + +DA    LG VL Q G  ++Y
Subjt:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTY

Query:  ASR
         SR
Subjt:  ASR

P0CT41 Transposon Tf2-12 polyprotein

3.5e-29

34.72

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
        M +G++ APA F   +N +  E  ++ ++ ++DDILI+SK+E EH +H++ VLQ L++  L    +KCEF   QV F G+ +S+ G +     I+ V +W
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW

Query:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQ
         +P    E+R FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL     S   ++ +DA    +G VL Q+
Subjt:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQ

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

1.1e-30

33.64

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
        + FGL NA ++F   ++ V RE +     V++DD++I+S+ E +H  H+  VL+ L D  +     K  F+ + V + G +VSK G   DP K++A+  +
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW

Query:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAPV-LTVPYGSGSFVIYSDAFKKGLGC
        P P  V +VR+FLGLA YYR F+++ + IA P+T + +           K  P  +++   ++FQ L+  L +  V L  P     F + +DA   G+G 
Subjt:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAPV-LTVPYGSGSFVIYSDAFKKGLGC

Query:  VLMQQGKVVTYASR
        VL Q+G+ +T  SR
Subjt:  VLMQQGKVVTYASR

P20825 Retrovirus-related Pol polyprotein from transposon 297

3.8e-36

37.44

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
        M FGL NAPA F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L D  L  +  KCEF  K+ +F GH+V+  G+  +P K++A+  +
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW

Query:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTY
        P P+   E+R FLGL GYYR+F+ N + IA P+T   +K       K    ++F+ LK  ++  P+L +P     FV+ +DA    LG VL Q G  +++
Subjt:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTY

Query:  ASR
         SR
Subjt:  ASR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

6.3e-31

32.72

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW
        + FGL NAPA+F  +++ + RE +     V+IDDI+++S+    H ++LR+VL +L    L     K  F   QV F G++V+  G+  DP K+ A++  
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRW

Query:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCV
        P P++V E++ FLG+  YYR+F+++ +++A PLT LTR              P    +    SF +LK  L ++ +L  P  +  F + +DA    +G V
Subjt:  PRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCV

Query:  LMQ----QGKVVTYASR
        L Q    + + + Y SR
Subjt:  LMQ----QGKVVTYASR

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

3.7e-26

45.16

Show/hide

Query:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQG--HVVSKAGVSVDPAKIEAVTRWPRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVW
        HL MVLQ    ++ YA   KC F   Q+++ G  H++S  GVS DPAK+EA+  WP P    E+R FLGL GYYRRFV+N  +I  PLT+L +K +   W
Subjt:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQG--HVVSKAGVSVDPAKIEAVTRWPRPSTVGEVRNFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVW

Query:  SKACEDSFQNLKQKLVTAPVLTVP
        ++    +F+ LK  + T PVL +P
Subjt:  SKACEDSFQNLKQKLVTAPVLTVP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGATTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTATGATCGTATTTATTGATGATATTTTGAT
ATATTCCAAGACAGAGGTCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACCCTTAGAGATAATAAATTGTATGCAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGC
AGGTATCCTTTCAAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCCGTTGGCCCCGACCTTCCACGGTCGGTGAGGTTCGT
AACTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTAGAGAACATTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAAGGAGCTCCTTTTGTTTGGAGCAA
GGCATGTGAGGATAGTTTCCAAAACCTTAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTTATGGTTCAGGGAGTTTTGTGATTTACAGTGATGCTTTTAAGA
AAGGTTTGGGTTGTGTATTGATGCAACAAGGTAAGGTAGTAACTTATGCTTCTCGTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFQGHVVSKAGVSVDPAKIEAVTRWPRPSTVGEVR
NFLGLAGYYRRFVENISRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPYGSGSFVIYSDAFKKGLGCVLMQQGKVVTYASR

Cmc05g0130541 (gene) of Melon (Charmono) v1.1 genome