| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0033501.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 4.8e-79 | 77.03 | Show/hide |
Query: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
M+SIKVIPS E NLNE STSHQVEIHSNLKD NPSSSDQLPT+A PSFHPQEEEEEENAEDLTNYSLTRDRGR+TIRPPSRFARADCIANSS ETI+DEP
Subjt: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
Query: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTI
YSY+DAL SRHNNQWKEAMN ELNSLYK DT +LVE PHGKSIIPCKWVFKKKMIG LND KHTSIRILL I
Subjt: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTI
Query: VACENLELE
VACENLELE
Subjt: VACENLELE
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| KAA0039651.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] | 5.6e-96 | 99.44 | Show/hide |
Query: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
Subjt: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
Query: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGV
YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKE V
Subjt: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGV
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| KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 2.9e-76 | 77.03 | Show/hide |
Query: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
M+SIKVIP AE NLNEPSTSHQVEIHSNLK+ NPSSSDQLPT+A PSF+ QEEEEEENAEDLTNYSLTRDRGR+TI+PPSRFARADCI NSSIETIED+P
Subjt: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
Query: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTI
SY+DA LYK PHGK IIPCKWVFKKKMIG LNDKVKFKARLVAKGF+QKEGVDYNEIF PVVKHTSIRILL I
Subjt: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTI
Query: VACENLELE
VACENLELE
Subjt: VACENLELE
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| KAA0062923.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] | 2.2e-76 | 83.24 | Show/hide |
Query: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
M+ IKVIPS E NLNE ST+HQVEIHSNLKDSNPS SDQLPT+ PSFHP EEEE+EN EDLT+YSLT DR R+TIRP SRFARA+CIANSSIETIEDEP
Subjt: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
Query: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGV
YSY+DAL SRH+NQWKEAMNDELNSLYKNDTWE VE PHGK IIPCKWVFKKKMIG LN+KVKFKARLVAKGF+QK V
Subjt: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGV
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| TYK27723.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 1.2e-77 | 87.01 | Show/hide |
Query: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
M+SIKVIP AE N NEPSTSHQVEIHSNLK+ NPSSSDQLPT+A PSF+ QEEEEE+NAEDLTNYSLTRDRGR+TIRPPSRFARADCIANSS ETIEDE
Subjt: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
Query: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKE
SY+DAL S+HNNQWKEAMNDELNSLYKNDTWELVE PHGKSIIPCK VFKKKMIG LNDKVKFKARLVAKGF+Q E
Subjt: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKE
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SVP7 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.3e-79 | 77.03 | Show/hide |
Query: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
M+SIKVIPS E NLNE STSHQVEIHSNLKD NPSSSDQLPT+A PSFHPQEEEEEENAEDLTNYSLTRDRGR+TIRPPSRFARADCIANSS ETI+DEP
Subjt: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
Query: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTI
YSY+DAL SRHNNQWKEAMN ELNSLYK DT +LVE PHGKSIIPCKWVFKKKMIG LND KHTSIRILL I
Subjt: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTI
Query: VACENLELE
VACENLELE
Subjt: VACENLELE
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| A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.4e-76 | 77.03 | Show/hide |
Query: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
M+SIKVIP AE NLNEPSTSHQVEIHSNLK+ NPSSSDQLPT+A PSF+ QEEEEEENAEDLTNYSLTRDRGR+TI+PPSRFARADCI NSSIETIED+P
Subjt: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
Query: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTI
SY+DA LYK PHGK IIPCKWVFKKKMIG LNDKVKFKARLVAKGF+QKEGVDYNEIF PVVKHTSIRILL I
Subjt: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTI
Query: VACENLELE
VACENLELE
Subjt: VACENLELE
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| A0A5D3BAM8 Retrotransposon protein, putative, Ty1-copia subclass | 2.7e-96 | 99.44 | Show/hide |
Query: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
Subjt: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
Query: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGV
YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKE V
Subjt: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGV
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| A0A5D3CYI6 Retrotransposon protein, putative, Ty1-copia subclass | 1.1e-76 | 83.24 | Show/hide |
Query: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
M+ IKVIPS E NLNE ST+HQVEIHSNLKDSNPS SDQLPT+ PSFHP EEEE+EN EDLT+YSLT DR R+TIRP SRFARA+CIANSSIETIEDEP
Subjt: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
Query: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGV
YSY+DAL SRH+NQWKEAMNDELNSLYKNDTWE VE PHGK IIPCKWVFKKKMIG LN+KVKFKARLVAKGF+QK V
Subjt: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGV
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| A0A5D3DVM0 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 5.7e-78 | 87.01 | Show/hide |
Query: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
M+SIKVIP AE N NEPSTSHQVEIHSNLK+ NPSSSDQLPT+A PSF+ QEEEEE+NAEDLTNYSLTRDRGR+TIRPPSRFARADCIANSS ETIEDE
Subjt: MDSIKVIPSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEP
Query: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKE
SY+DAL S+HNNQWKEAMNDELNSLYKNDTWELVE PHGKSIIPCK VFKKKMIG LNDKVKFKARLVAKGF+Q E
Subjt: YSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKE
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 9.2e-17 | 30.61 | Show/hide |
Query: LKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSL---TRDRG---------RKTIRPPSRFARADCIANSSI----ETIEDEPYSYKDALCSRHN
L +S D ++ S +P E E E AE L + T++ G R +P + D N + D P S+ +
Subjt: LKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSL---TRDRG---------RKTIRPPSRFARADCIANSSI----ETIEDEPYSYKDALCSRHN
Query: NQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTIVACENLEL
+ W+EA+N ELN+ N+TW + + P K+I+ +WVF K L + +++KARLVA+GF QK +DY E F+PV + +S R +L++V NL++
Subjt: NQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTIVACENLEL
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.9e-22 | 38.24 | Show/hide |
Query: IPSAEHN-LNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEPYSYKD
IPS +N + ST+ +V +QL HP + EE+ + L R R R+ + + S + EP S K+
Subjt: IPSAEHN-LNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEPYSYKD
Query: ALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTIVACEN
L NQ +AM +E+ SL KN T++LVE P GK + CKWVFK K G V++KARLV KGFEQK+G+D++EIFSPVVK TSIR +L++ A +
Subjt: ALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKMIGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTIVACEN
Query: LELE
LE+E
Subjt: LELE
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| P92520 Uncharacterized mitochondrial protein AtMg00820 | 2.3e-15 | 43.52 | Show/hide |
Query: TIEDEPYSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKM--IGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHT
TI+ EP K + + + W +AM +EL++L +N TW LV P ++I+ CKWVFK K+ G L+ + KARLVAKGF Q+EG+ + E +SPVV+
Subjt: TIEDEPYSYKDALCSRHNNQWKEAMNDELNSLYKNDTWELVETPHGKSIIPCKWVFKKKM--IGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHT
Query: SIRILLTI
+IR +L +
Subjt: SIRILLTI
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.6e-16 | 34.74 | Show/hide |
Query: STSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHP----QEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEPYSYKDALCSRHNN
ST Q S ++ SSS PT HP + N L +S+ I+P +++ A +A E EP + A+ + +
Subjt: STSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHP----QEEEEEENAEDLTNYSLTRDRGRKTIRPPSRFARADCIANSSIETIEDEPYSYKDALCSRHNN
Query: QWKEAMNDELNSLYKNDTWELVETPHGK-SIIPCKWVFKKK--MIGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTI
+W+ AM E+N+ N TW+LV P +I+ C+W+F KK G LN ++KARLVAKG+ Q+ G+DY E FSPV+K TSIRI+L +
Subjt: QWKEAMNDELNSLYKNDTWELVETPHGK-SIIPCKWVFKKK--MIGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTI
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 6.4e-18 | 34.52 | Show/hide |
Query: PSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPS-RFARADCIANSSIETIEDEPYSYKDA
P + ++ PSTS + + N SS T P P + NA+ N R + IR P+ +++ A +A +S EP + A
Subjt: PSAEHNLNEPSTSHQVEIHSNLKDSNPSSSDQLPTKAFPSFHPQEEEEEENAEDLTNYSLTRDRGRKTIRPPS-RFARADCIANSSIETIEDEPYSYKDA
Query: LCSRHNNQWKEAMNDELNSLYKNDTWELV-ETPHGKSIIPCKWVFKKKM--IGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTI
+ + +++W++AM E+N+ N TW+LV P +I+ C+W+F KK G LN ++KARLVAKG+ Q+ G+DY E FSPV+K TSIRI+L +
Subjt: LCSRHNNQWKEAMNDELNSLYKNDTWELV-ETPHGKSIIPCKWVFKKKM--IGYLNDKVKFKARLVAKGFEQKEGVDYNEIFSPVVKHTSIRILLTI
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