CuGenDBv2

Gene ID	Cmc05g0131071
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr05:10071987..10072837
RNA-Seq Expression	Cmc05g0131071
Synteny	Cmc05g0131071
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036574.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.7e-44

46.48

Show/hide

Query:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V
        MKDLG LNYFLGLEI SS++GYYLS+AKYAS+L +RSGITDSAT S PLD NV LTPFDGVPL+DPTLYR+LVG LI LT+T                  
Subjt:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V

Query:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL
        + +H   +L +  ++  TL     F+     V S    A W   GDPTDRR TT YCFYLGD LI   ++   +         +     + + ++WL  L
Subjt:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL

Query:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP
                 L   G  +  P           ++ H  ++    +HI+NDC+FVRHHLQSNTLHL  IS TDQPADIFTK L SP
Subjt:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP

KAA0039648.1 putative mitochondrial protein [Cucumis melo var. makuwa]

3.5e-55

100

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Query:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLTVQILHLQFILLLNSWLLL
        MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLTVQILHLQFILLLNSWLLL
Subjt:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLTVQILHLQFILLLNSWLLL

Query:  TLFTLLLFFVFSAILKAIWVMV
        TLFTLLLFFVFSAILKAIWVMV
Subjt:  TLFTLLLFFVFSAILKAIWVMV

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.7e-44

46.48

Show/hide

Query:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V
        MKDLG LNYFLGLEI SS++GYYLS+AKYAS+L +RSGITDSAT S PLD NV LTPFDGVPL+DPTLYR+LVG LI LT+T                  
Subjt:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V

Query:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL
        + +H   +L +  ++  TL     F+     V S    A W   GDPTDRR TT YCFYLGD LI   ++   +         +     + + ++WL  L
Subjt:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL

Query:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP
                 L   G  +  P           ++ H  ++    +HI+NDC+FVRHHLQSNTLHL  IS TDQPADIFTK L SP
Subjt:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.7e-44

46.48

Show/hide

Query:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V
        MKDLG LNYFLGLEI SS++GYYLS+AKYAS+L +RSGITDSAT S PLD NV LTPFDGVPL+DPTLYR+LVG LI LT+T                  
Subjt:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V

Query:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL
        + +H   +L +  ++  TL     F+     V S    A W   GDPTDRR TT YCFYLGD LI   ++   +         +     + + ++WL  L
Subjt:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL

Query:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP
                 L   G  +  P           ++ H  ++    +HI+NDC+FVRHHLQSNTLHL  IS TDQPADIFTK L SP
Subjt:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP

TYK12316.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.7e-44

46.48

Show/hide

Query:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V
        MKDLG LNYFLGLEI SS++GYYLS+AKYAS+L +RSGITDSAT S PLD NV LTPFDGVPL+DPTLYR+LVG LI LT+T                  
Subjt:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V

Query:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL
        + +H   +L +  ++  TL     F+     V S    A W   GDPTDRR TT YCFYLGD LI   ++   +         +     + + ++WL  L
Subjt:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL

Query:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP
                 L   G  +  P           ++ H  ++    +HI+NDC+FVRHHLQSNTLHL  IS TDQPADIFTK L SP
Subjt:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-44

46.48

Show/hide

Query:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V
        MKDLG LNYFLGLEI SS++GYYLS+AKYAS+L +RSGITDSAT S PLD NV LTPFDGVPL+DPTLYR+LVG LI LT+T                  
Subjt:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V

Query:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL
        + +H   +L +  ++  TL     F+     V S    A W   GDPTDRR TT YCFYLGD LI   ++   +         +     + + ++WL  L
Subjt:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL

Query:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP
                 L   G  +  P           ++ H  ++    +HI+NDC+FVRHHLQSNTLHL  IS TDQPADIFTK L SP
Subjt:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP

A0A5A7T9T2 Putative mitochondrial protein

1.7e-55

100

Show/hide

Query:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLTVQILHLQFILLLNSWLLL
        MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLTVQILHLQFILLLNSWLLL
Subjt:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLTVQILHLQFILLLNSWLLL

Query:  TLFTLLLFFVFSAILKAIWVMV
        TLFTLLLFFVFSAILKAIWVMV
Subjt:  TLFTLLLFFVFSAILKAIWVMV

A0A5A7VDW0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-44

46.48

Show/hide

Query:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V
        MKDLG LNYFLGLEI SS++GYYLS+AKYAS+L +RSGITDSAT S PLD NV LTPFDGVPL+DPTLYR+LVG LI LT+T                  
Subjt:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V

Query:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL
        + +H   +L +  ++  TL     F+     V S    A W   GDPTDRR TT YCFYLGD LI   ++   +         +     + + ++WL  L
Subjt:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL

Query:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP
                 L   G  +  P           ++ H  ++    +HI+NDC+FVRHHLQSNTLHL  IS TDQPADIFTK L SP
Subjt:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-44

46.48

Show/hide

Query:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V
        MKDLG LNYFLGLEI SS++GYYLS+AKYAS+L +RSGITDSAT S PLD NV LTPFDGVPL+DPTLYR+LVG LI LT+T                  
Subjt:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V

Query:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL
        + +H   +L +  ++  TL     F+     V S    A W   GDPTDRR TT YCFYLGD LI   ++   +         +     + + ++WL  L
Subjt:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL

Query:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP
                 L   G  +  P           ++ H  ++    +HI+NDC+FVRHHLQSNTLHL  IS TDQPADIFTK L SP
Subjt:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP

A0A5D3DWU7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-44

46.48

Show/hide

Query:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V
        MKDLG LNYFLGLEI SS++GYYLS+AKYAS+L +RSGITDSAT S PLD NV LTPFDGVPL+DPTLYR+LVG LI LT+T                  
Subjt:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT-----------------V

Query:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL
        + +H   +L +  ++  TL     F+     V S    A W   GDPTDRR TT YCFYLGD LI   ++   +         +     + + ++WL  L
Subjt:  QILHLQFILLLNSWLLLTL-----FTLLLFFVFSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNML---------FFVPGQSLNIVLWLVPL

Query:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP
                 L   G  +  P           ++ H  ++    +HI+NDC+FVRHHLQSNTLHL  IS TDQPADIFTK L SP
Subjt:  QNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRL-HTMMYFMNEQHIDNDCYFVRHHLQSNTLHLHIISITDQPADIFTKVLRSP

SwissProt top hits

e value

%identity

Alignment

P92519 Uncharacterized mitochondrial protein AtMg00810

2.4e-06

37.8

Show/hide

Query:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT
        MKDLG ++YFLG++I +  +G +LS+ KYA  + + +G+ D    S PL    + +        DP+ +R +VG L  LTLT
Subjt:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

2.4e-09

40.24

Show/hide

Query:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT
        ++DLG L YFLGLEI  SA G  + + KYA +L   +G+     SS+P+D +V  +   G    D   YR+L+G L+ L +T
Subjt:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT

ATMG00810.1 DNA/RNA polymerases superfamily protein

1.7e-07

37.8

Show/hide

Query:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT
        MKDLG ++YFLG++I +  +G +LS+ KYA  + + +G+ D    S PL    + +        DP+ +R +VG L  LTLT
Subjt:  MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAGGATTTAGGAACCCTAAACTATTTTCTTGGTCTTGAGATCCCATCCTCGGCTAATGGATACTACTTATCTGAAGCAAAATATGCCTCTAATCTCCCCAGTCGATC
TGGTATTACTGATTCTGCCACGTCTTCAATGCCTCTGGATGAAAATGTTATACTCACTCCTTTTGATGGTGTTCCTCTTGACGATCCCACTTTGTATCGAAAACTTGTTG
GCATCCTAATTGACTTAACTTTGACCGTCCAAATATTGCATCTGCAGTTCATATTGTTACTCAATTCATGGCTGCTCCTCACACTATTCACTTTACTACTATTCTTTGTA
TTCTCTGCTATATTAAAGGCAATTTGGGTCATGGTGGGTGATCCCACTGATAGAAGGCCTACTACTTGTTATTGTTTCTATTTAGGTGATACTCTAATCTTCGACGTAGC
AAGAAACAATATGTTGTTTTTCGTTCCAGGACAGAGTTTGAATATCGTGCTCTGGCTGGTGCCCCTTCAAAATTACTATGGCTTCTTTGTTTTCTTACTGATATGGGGGT
TCCACAAAGGTCACCCACTATTCTTCATTGTGATAACTATAATGCTATTCAGATTGCACACAATGATGTACTTCATGAACGAACAACATATTGATAATGACTGTTATTTT
GTTCGCCATCATCTTCAGAGCAACACTCTTCATCTCCATATCATTTCCATCACTGACCAACCAGCAGATATCTTCACTAAAGTTCTCCGCTCTCCATTCTCCTCTATTCA
CTCTGTTACTTCAAAAACTTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MKDLGTLNYFLGLEIPSSANGYYLSEAKYASNLPSRSGITDSATSSMPLDENVILTPFDGVPLDDPTLYRKLVGILIDLTLTVQILHLQFILLLNSWLLLTLFTLLLFFV
FSAILKAIWVMVGDPTDRRPTTCYCFYLGDTLIFDVARNNMLFFVPGQSLNIVLWLVPLQNYYGFFVFLLIWGFHKGHPLFFIVITIMLFRLHTMMYFMNEQHIDNDCYF
VRHHLQSNTLHLHIISITDQPADIFTKVLRSPFSSIHSVTSKT

Cmc05g0131071 (gene) of Melon (Charmono) v1.1 genome