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Cmc05g0131201 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc05g0131201
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr05:10224939..10225196
RNA-Seq ExpressionCmc05g0131201
SyntenyCmc05g0131201
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037745.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.7e-4198.82Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV AAK
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
KAA0039638.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-41100Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
KAA0056932.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.7e-4198.82Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV AAK
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
TYK11630.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.7e-4198.82Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV AAK
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
TYK19656.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.7e-4198.82Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV AAK
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
TrEMBL top hitse value%identityAlignment
A0A5A7T8F2 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-4198.82Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV AAK
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
A0A5A7T9S5 Retrotransposon protein7.8e-42100Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
A0A5A7VIT8 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-4198.82Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV AAK
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
A0A5D3D7V8 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-4198.82Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV AAK
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
A0A5D3E0Q6 Putative mitochondrial protein2.3e-4198.82Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV AAK
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK
SwissProt top hitse value%identityAlignment
P04146 Copia protein2.1e-1546.34Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVV
        +N EL A +  +TW     P  K  +  +W++ +K +  G   RYKARLVA+G++Q+Y IDYEETFAPVAR++S R +L++V
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVV
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-2048.81Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAA
        M +E+++L+K  T+  V+LP GKRP+ CKW++K+K   D  + RYKARLV KG+ Q+ GID++E F+PV +MTS+R++L++ A+
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAA
P92520 Uncharacterized mitochondrial protein AtMg008202.0e-1850.62Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV
        M +EL AL +  TW  V  P  +  +GCKW++K K HSDGT++R KARLVAKG+ QE GI + ET++PV R  ++R++L V
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.4e-1853.66Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPI-GCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV
        M  E+ A    HTWD V  PP    I GC+WI+  K +SDG++ RYKARLVAKGY+Q  G+DY ETF+PV + TS+R +L V
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPI-GCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.4e-1853.66Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPI-GCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV
        M  E+ A    HTWD V  PP    I GC+WI+  K +SDG++ RYKARLVAKGY+Q  G+DY ETF+PV + TS+R +L V
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPI-GCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV
Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 84.4e-2965.06Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVA
        M+DE+ A+E  HTW+   LPP K+PIGCKW+YKIK +SDGTIERYKARLVAKGY+Q+ GID+ ETF+PV ++TSV+ +LA+ A
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVA
ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)1.4e-1950.62Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV
        M +EL AL +  TW  V  P  +  +GCKW++K K HSDGT++R KARLVAKG+ QE GI + ET++PV R  ++R++L V
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGATGAATTACAGGCTCTTGAAAAGATGCACACTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACCCATTGGCTGCAAGTGGATCTACAAAATCAAGACTCA
CTCTGATGGTACTATTGAGCGTTATAAGGCTCGGCTTGTAGCAAAAGGGTATTCCCAAGAGTATGGCATTGACTATGAAGAAACATTTGCTCCTGTGGCTCGGATGACAT
CTGTACGTAGTTTACTAGCTGTTGTTGCTGCCAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGATGAATTACAGGCTCTTGAAAAGATGCACACTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACCCATTGGCTGCAAGTGGATCTACAAAATCAAGACTCA
CTCTGATGGTACTATTGAGCGTTATAAGGCTCGGCTTGTAGCAAAAGGGTATTCCCAAGAGTATGGCATTGACTATGAAGAAACATTTGCTCCTGTGGCTCGGATGACAT
CTGTACGTAGTTTACTAGCTGTTGTTGCTGCCAAGTAG
Protein sequenceShow/hide protein sequence
MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVRSLLAVVAAK