CuGenDBv2

Gene ID	Cmc05g0131981
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr05:11866073..11866561
RNA-Seq Expression	Cmc05g0131981
Synteny	Cmc05g0131981
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

3.7e-79

91.77

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGK TYTA+KWAQLYMSE+VRLHGV 
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDG+TERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD

KAA0053631.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.7e-79

91.77

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGK TYTA+KWAQLYMSE+VRLHGV 
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDG+TERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD

KAA0064005.1 pol protein [Cucumis melo var. makuwa]

3.7e-79

91.77

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGK TYTA+KWAQLYMSE+VRLHGV 
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDG+TERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD

KAA0066456.1 pol protein [Cucumis melo var. makuwa]

3.7e-79

91.77

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGK TYTA+KWAQLYMSE+VRLHGV 
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDG+TERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD

TYK01613.1 pol protein [Cucumis melo var. makuwa]

3.7e-79

91.77

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGK TYTA+KWAQLYMSE+VRLHGV 
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDG+TERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZD6 Pol protein

1.8e-79

91.77

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGK TYTA+KWAQLYMSE+VRLHGV 
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDG+TERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD

A0A5A7UDJ5 Pol protein

1.8e-79

91.77

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGK TYTA+KWAQLYMSE+VRLHGV 
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDG+TERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD

A0A5A7VDP3 Pol protein

1.8e-79

91.77

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGK TYTA+KWAQLYMSE+VRLHGV 
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDG+TERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD

A0A5A7VJE2 Reverse transcriptase

1.8e-79

91.77

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGK TYTA+KWAQLYMSE+VRLHGV 
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDG+TERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD

A0A5D3BPI1 Reverse transcriptase

1.8e-79

91.77

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGK TYTA+KWAQLYMSE+VRLHGV 
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDG+TERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFD

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

2.4e-25

37.89

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL
        +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVD  +K A  +P   + TA + A+++   ++   G  
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLR-VCAFDGN
          I++D D  FTS+ WK         + FS  + PQTDG+TER NQ +E +LR VC+   N
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLR-VCAFDGN

P0CT41 Transposon Tf2-12 polyprotein

2.4e-25

37.89

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL
        +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVD  +K A  +P   + TA + A+++   ++   G  
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLR-VCAFDGN
          I++D D  FTS+ WK         + FS  + PQTDG+TER NQ +E +LR VC+   N
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLR-VCAFDGN

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

1.7e-26

39.22

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL
        ++  + +++  C+ CQ +K+ R +  GLLQPL + E +W ++SMDF+TGLP T     +I VVVD  +K AHFI  + T  AT+   L    +   HG  
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLR
         +I SDRD R T+  ++ L   +G +   S+  HPQTDG++ER  Q L  +LR
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLR

Q99315 Transposon Ty3-G Gag-Pol polyprotein

5.8e-27

39.1

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL
        ++  + +++  C+ CQ +K+ R +  GLLQPL + E +W ++SMDF+TGLP T     +I VVVD  +K AHFI  + T  AT+   L    +   HG  
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCA
         +I SDRD R T+  ++ L   +G +   S+  HPQTDG++ER  Q L  +LR  A
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCA

Q9UR07 Transposon Tf2-11 polyprotein

2.4e-25

37.89

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL
        +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVD  +K A  +P   + TA + A+++   ++   G  
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLR-VCAFDGN
          I++D D  FTS+ WK         + FS  + PQTDG+TER NQ +E +LR VC+   N
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLR-VCAFDGN

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGAGGGAGGTGGCAGAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAAGCACCAAGACAGAAACCAGCAGGTCTATTACAACCCTTGAGCGTACCGGAATG
GAAGTGGGAAAATGTGTCCATGGATTTCATTACAGGACTGCCTAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTTGACACGCTTACCAAATCAGCACACTTCA
TTCCGGGTAAATTCACCTATACTGCTACTAAGTGGGCACAGTTGTATATGTCTGAGATGGTGAGACTTCATGGAGTGCTAGTGTCGATCGTTTCTGATAGAGATGCTCGG
TTCACTTCCAAATTCTGGAAGGGTTTGCAGGCTGCTATGGGCACGAGGTTAGACTTTAGTACGACTTTTCACCCACAGACCGATGGTAAGACTGAGCGTCTGAACCAAGT
TTTAGAGGATATGTTGCGAGTTTGTGCATTTGATGGAAATTTCTTATAA

mRNA sequence

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Protein sequence

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MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKFTYTATKWAQLYMSEMVRLHGVLVSIVSDRDAR
FTSKFWKGLQAAMGTRLDFSTTFHPQTDGKTERLNQVLEDMLRVCAFDGNFL

Cmc05g0131981 (gene) of Melon (Charmono) v1.1 genome