; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc05g0132001 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc05g0132001
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPol protein
Genome locationCMiso1.1chr05:11884839..11885715
RNA-Seq ExpressionCmc05g0132001
SyntenyCmc05g0132001
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAO45752.1 pol protein [Cucumis melo subsp. melo]8.6e-15398.16Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHL+EFAYNNSYQATIGMAPFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK
        RKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS VHDVFHVSMLRK
Subjt:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK

KAA0041424.1 pol protein [Cucumis melo var. makuwa]1.7e-15397.79Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHL+EFAYNNSYQATIGMAPFEALYG+CCRSPVCWDEVGEQRL+GPELVQSTNEA+QKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK
        RKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILER+GPVAYRLALPPSLSAVHDVFHVSMLRK
Subjt:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK

KAA0043401.1 pol protein [Cucumis melo var. makuwa]3.0e-15398.53Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHL+EFAYNNSYQATIGMAPFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK
        RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFH+SMLRK
Subjt:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK

KAA0051368.1 pol protein [Cucumis melo var. makuwa]6.6e-15398.53Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHL+EFAYNNSYQATIGMAPFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK
        RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS VHDVFHVSMLRK
Subjt:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK

KAA0064005.1 pol protein [Cucumis melo var. makuwa]6.6e-15398.53Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHL+EFAYNNSYQATIGM PFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK
        RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK
Subjt:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK

TrEMBL top hitse value%identityAlignment
A0A5A7TDB5 Pol protein8.4e-15497.79Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHL+EFAYNNSYQATIGMAPFEALYG+CCRSPVCWDEVGEQRL+GPELVQSTNEA+QKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK
        RKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILER+GPVAYRLALPPSLSAVHDVFHVSMLRK
Subjt:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK

A0A5A7TPA9 Pol protein1.4e-15398.53Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHL+EFAYNNSYQATIGMAPFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK
        RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFH+SMLRK
Subjt:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK

A0A5A7U7V9 Reverse transcriptase3.2e-15398.53Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHL+EFAYNNSYQATIGMAPFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK
        RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS VHDVFHVSMLRK
Subjt:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK

A0A5A7VDP3 Pol protein3.2e-15398.53Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHL+EFAYNNSYQATIGM PFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK
        RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK
Subjt:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK

Q84KB0 Pol protein4.2e-15398.16Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHL+EFAYNNSYQATIGMAPFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK
        RKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS VHDVFHVSMLRK
Subjt:  RKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein3.0e-3935.27Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRC-CRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ LV+ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRC-CRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRK

P0CT35 Transposon Tf2-2 polyprotein3.0e-3935.27Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRC-CRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ LV+ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRC-CRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRK

P0CT36 Transposon Tf2-3 polyprotein3.0e-3935.27Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRC-CRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ LV+ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRC-CRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRK

P0CT41 Transposon Tf2-12 polyprotein3.0e-3935.27Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRC-CRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ LV+ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRC-CRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRK

Q9UR07 Transposon Tf2-11 polyprotein3.0e-3935.27Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRC-CRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ LV+ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRC-CRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTCATTACAGGGCTACCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTA
TACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGA
AGGGTTTGCAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGG
GCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGGTGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCGTTTGAGGCCCT
GTACGGCAGATGTTGTAGATCCCCGGTTTGCTGGGATGAGGTAGGTGAGCAAAGATTGATCGGTCCTGAGTTAGTCCAGTCTACTAACGAAGCTATACAGAAGATTAGAT
CACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTCGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAA
GGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCATTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTACCTCCATC
ACTCTCGGCAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAATTGATGAAAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTCATTACAGGGCTACCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTA
TACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGA
AGGGTTTGCAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGG
GCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGGTGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCGTTTGAGGCCCT
GTACGGCAGATGTTGTAGATCCCCGGTTTGCTGGGATGAGGTAGGTGAGCAAAGATTGATCGGTCCTGAGTTAGTCCAGTCTACTAACGAAGCTATACAGAAGATTAGAT
CACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTCGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAA
GGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCATTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTACCTCCATC
ACTCTCGGCAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAATTGATGAAAACTTGA
Protein sequenceShow/hide protein sequence
MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLR
ACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK
GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKLMKT