CuGenDBv2

Gene ID	Cmc05g0132031
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr05:11922588..11923076
RNA-Seq Expression	Cmc05g0132031
Synteny	Cmc05g0132031
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

2.8e-79

92.41

Show/hide

Query:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL
        MKREVAEFVSKCLVC QVK PRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV 
Subjt:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD

KAA0051357.1 pol protein [Cucumis melo var. makuwa]

2.2e-79

92.41

Show/hide

Query:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL
        MKREVAEFVSKCLVC QVKEPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV 
Subjt:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQ DGQTERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD

KAA0053631.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.8e-79

92.41

Show/hide

Query:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL
        MKREVAEFVSKCLVC QVK PRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV 
Subjt:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD

KAA0064005.1 pol protein [Cucumis melo var. makuwa]

2.8e-79

92.41

Show/hide

Query:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL
        MKREVAEFVSKCLVC QVK PRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV 
Subjt:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD

TYK01613.1 pol protein [Cucumis melo var. makuwa]

2.8e-79

92.41

Show/hide

Query:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL
        MKREVAEFVSKCLVC QVK PRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV 
Subjt:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZD6 Pol protein

1.4e-79

92.41

Show/hide

Query:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL
        MKREVAEFVSKCLVC QVK PRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV 
Subjt:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD

A0A5A7UAA8 Reverse transcriptase

1.0e-79

92.41

Show/hide

Query:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL
        MKREVAEFVSKCLVC QVKEPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV 
Subjt:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQ DGQTERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD

A0A5A7UDJ5 Pol protein

1.4e-79

92.41

Show/hide

Query:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL
        MKREVAEFVSKCLVC QVK PRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV 
Subjt:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD

A0A5A7VDP3 Pol protein

1.4e-79

92.41

Show/hide

Query:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL
        MKREVAEFVSKCLVC QVK PRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV 
Subjt:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD

A0A5A7VJE2 Reverse transcriptase

1.4e-79

92.41

Show/hide

Query:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL
        MKREVAEFVSKCLVC QVK PRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV 
Subjt:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD
        VSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

1.9e-25

37.89

Show/hide

Query:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL
        +++++ E+V  C  C   K    KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVD  +K A  +P   + TA + A+++   ++   G  
Subjt:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLR-VCAFDGN
          I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR VC+   N
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLR-VCAFDGN

P0CT41 Transposon Tf2-12 polyprotein

1.9e-25

37.89

Show/hide

Query:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL
        +++++ E+V  C  C   K    KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVD  +K A  +P   + TA + A+++   ++   G  
Subjt:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLR-VCAFDGN
          I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR VC+   N
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLR-VCAFDGN

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

7.6e-27

39.87

Show/hide

Query:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL
        ++  + +++  C+ C  +K  R +  GLLQPL + E +W ++SMDF+TGLP T     +I VVVD  +K AHFI  + T  AT+   L    I   HG  
Subjt:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLR
         +I SDRD R T+  ++ L   +G +   S+  HPQTDGQ+ER  Q L  +LR
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLR

Q99315 Transposon Ty3-G Gag-Pol polyprotein

3.4e-27

39.74

Show/hide

Query:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL
        ++  + +++  C+ C  +K  R +  GLLQPL + E +W ++SMDF+TGLP T     +I VVVD  +K AHFI  + T  AT+   L    I   HG  
Subjt:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCA
         +I SDRD R T+  ++ L   +G +   S+  HPQTDGQ+ER  Q L  +LR  A
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCA

Q9UR07 Transposon Tf2-11 polyprotein

1.9e-25

37.89

Show/hide

Query:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL
        +++++ E+V  C  C   K    KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVD  +K A  +P   + TA + A+++   ++   G  
Subjt:  MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVL

Query:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLR-VCAFDGN
          I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR VC+   N
Subjt:  VSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLR-VCAFDGN

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGAGGGAGGTGGCAGAATTTGTTAGTAAATGCTTGGTGTGTCCGCAGGTTAAAGAACCAAGACAGAAACCAGCAGGTCTATTACAACCCTTGAGCGTACCGGAATG
GAAGTGGGAAAATGTGTCCATGGATTTCATTACAGGACTGCCTAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTTGACACGCTTACCAAATCAGCACACTTCA
TTCCGGGTAAATCTACCTATACTGCTACTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGACTTCATGGAGTGCTAGTGTCGATCGTTTCTGATAGAGATGCTCGG
TTCACTTCCAAATTCTGGAAGGGTTTGCAGGCTGCTATGGGCACGAGGTTAGACTTTAGTACGACTTTTCACCCACAGACCGATGGTCAGACTGAGCGTCTGAACCAAGT
TTTAGAGGATATGTTGCGAGTTTGTGCATTTGATGGAAATTTCTTATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKREVAEFVSKCLVCPQVKEPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDAR
FTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFDGNFL

Cmc05g0132031 (gene) of Melon (Charmono) v1.1 genome