CuGenDBv2

Gene ID	Cmc05g0132941
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr05:13301094..13301525
RNA-Seq Expression	Cmc05g0132941
Synteny	Cmc05g0132941
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0033336.1 gag/pol protein [Cucumis melo var. makuwa]

3.6e-62

85.21

Show/hide

Query:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV
        ML+YGSKDLILTGYT+SDFQTDKDARKSTSG VFTLNGGAV+WRSI+QSCIADSTME EYVAACEAAKE VW+KKFLT+LEV  NMHL IT+Y+DNSGAV
Subjt:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV

Query:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM
        ANSREPRS K+GKHI+RKYHLI+EIV++GDVT+TKISSEQNM
Subjt:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM

KAA0042319.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]

2.8e-62

86.52

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Query:  LMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAVA
        L+YGSKDLILTGYT+SDFQTDKDARKSTSG VFTLNGGAV+WRSIKQSCIADSTM+AEYVA CEAAKE VW+KKFLT+LEV  NMH  ITLY DNSGA+A
Subjt:  LMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAVA

Query:  NSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM
        NSREPRSHK+GKHIER YHLIKEIVHRGDVT+ KISSEQNM
Subjt:  NSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM

KAA0051190.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-62

86.62

Show/hide

Query:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV
        M +YGSKDLILTGYT SDFQTDKDARKST G VFTLNGGAV+WRSIKQSCI DSTMEAEYVAACEAAKE VW+KKFLT+LEV LNMHL ITLY DNSGAV
Subjt:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV

Query:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM
        ANSREP+SHK+GKHIERKYHLI+EIVH+GDV  TKISSEQNM
Subjt:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM

KAA0059674.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]

1.6e-62

84.51

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Query:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV
        ML+YGSKDLILTGYT+SDFQTDKD+RKSTSG VFTLNGGAV+WR+IKQSCIADSTMEAE++ ACEAAKE VW+KKFLT+LEV  NMHL ITLY DNSGAV
Subjt:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV

Query:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM
        ANSREPRSHK+GKHIERKYHLI+EI+HRGDV +TKISSEQN+
Subjt:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM

TYK21571.1 gag/pol protein [Cucumis melo var. makuwa]

3.6e-62

85.21

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Query:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV
        ML+YGSKDLILTGYT+SDFQTDKDARKSTSG VFTLNGGAV+WRSI+QSCIADSTME EYVAACEAAKE VW+KKFLT+LEV  NMHL IT+Y+DNSGAV
Subjt:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV

Query:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM
        ANSREPRS K+GKHI+RKYHLI+EIV++GDVT+TKISSEQNM
Subjt:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM

TrEMBL top hits

e value

%identity

Alignment

A0A5A7STL2 Gag/pol protein

1.8e-62

85.21

Show/hide

Query:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV
        ML+YGSKDLILTGYT+SDFQTDKDARKSTSG VFTLNGGAV+WRSI+QSCIADSTME EYVAACEAAKE VW+KKFLT+LEV  NMHL IT+Y+DNSGAV
Subjt:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV

Query:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM
        ANSREPRS K+GKHI+RKYHLI+EIV++GDVT+TKISSEQNM
Subjt:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM

A0A5A7TLV1 Retrovirus-related pol polyprotein from transposon tnt 1-94

1.3e-62

86.52

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Query:  LMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAVA
        L+YGSKDLILTGYT+SDFQTDKDARKSTSG VFTLNGGAV+WRSIKQSCIADSTM+AEYVA CEAAKE VW+KKFLT+LEV  NMH  ITLY DNSGA+A
Subjt:  LMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAVA

Query:  NSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM
        NSREPRSHK+GKHIER YHLIKEIVHRGDVT+ KISSEQNM
Subjt:  NSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM

A0A5A7U7L0 Gag/pol protein

1.3e-62

86.62

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Query:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV
        M +YGSKDLILTGYT SDFQTDKDARKST G VFTLNGGAV+WRSIKQSCI DSTMEAEYVAACEAAKE VW+KKFLT+LEV LNMHL ITLY DNSGAV
Subjt:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV

Query:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM
        ANSREP+SHK+GKHIERKYHLI+EIVH+GDV  TKISSEQNM
Subjt:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM

A0A5A7UX57 Retrovirus-related pol polyprotein from transposon tnt 1-94

7.9e-63

84.51

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Query:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV
        ML+YGSKDLILTGYT+SDFQTDKD+RKSTSG VFTLNGGAV+WR+IKQSCIADSTMEAE++ ACEAAKE VW+KKFLT+LEV  NMHL ITLY DNSGAV
Subjt:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV

Query:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM
        ANSREPRSHK+GKHIERKYHLI+EI+HRGDV +TKISSEQN+
Subjt:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM

A0A5D3DD25 Gag/pol protein

1.8e-62

85.21

Show/hide

Query:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV
        ML+YGSKDLILTGYT+SDFQTDKDARKSTSG VFTLNGGAV+WRSI+QSCIADSTME EYVAACEAAKE VW+KKFLT+LEV  NMHL IT+Y+DNSGAV
Subjt:  MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV

Query:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM
        ANSREPRS K+GKHI+RKYHLI+EIV++GDVT+TKISSEQNM
Subjt:  ANSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQNM

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

8.2e-17

33.83

Show/hide

Query:  LTGYTESDFQTDKDARKSTSGLVFTL-NGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAVANSREPRSH
        + GY +SD+   +  RKST+G +F + +   + W + +Q+ +A S+ EAEY+A  EA +E +W+K  LT++ + L     I +Y DN G ++ +  P  H
Subjt:  LTGYTESDFQTDKDARKSTSGLVFTL-NGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAVANSREPRSH

Query:  KQGKHIERKYHLIKEIVHRGDVTITKISSEQNM
        K+ KHI+ KYH  +E V    + +  I +E  +
Subjt:  KQGKHIERKYHLIKEIVHRGDVTITKISSEQNM

P0CV72 Secreted RxLR effector protein 161

4.0e-11

50.79

Show/hide

Query:  LTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWI
        L GY+++D+  D ++R+STSG +F LNGG V WRS KQ  +A S+ E EY+A  EA +E VW+
Subjt:  LTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.7e-25

41.43

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Query:  LMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAVA
        L +G  D IL GYT++D   D D RKS++G +FT +GGA+ W+S  Q C+A ST EAEY+AA E  KE++W+K+FL  L +    ++   +Y D+  A+ 
Subjt:  LMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAVA

Query:  NSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQN
         S+    H + KHI+ +YH I+E+V    + + KIS+ +N
Subjt:  NSREPRSHKQGKHIERKYHLIKEIVHRGDVTITKISSEQN

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

4.3e-13

33.06

Show/hide

Query:  LMYGSK-DLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV
        L Y S+ ++ L  ++++ FQ+ KD R+ST+G    L    + W+S KQ  ++ S+ EAEY A   A  E++W+ +F   L++ L+   L  L+ DN+ A+
Subjt:  LMYGSK-DLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAV

Query:  ANSREPRSHKQGKHIERKYHLIKE
          +     H++ KHIE   H ++E
Subjt:  ANSREPRSHKQGKHIERKYHLIKE

Sequences

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CDS sequence

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ATGCTTATGTATGGTTCTAAGGATCTTATCCTTACTGGATACACTGAGTCTGATTTCCAAACTGATAAAGATGCTAGAAAGTCTACATCAGGATTAGTTTTCACTCTGAA
TGGAGGAGCAGTACTGTGGAGAAGCATAAAACAATCCTGTATTGCCGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGTGAAGCAGCAAAGGAAGTAGTATGGATTA
AAAAGTTCTTAACAAATTTGGAAGTTTTTCTAAATATGCATCTGCTAATCACCTTATACTATGACAACAGTGGTGCAGTTGCAAATTCGCGAGAACCTAGAAGTCATAAA
CAAGGAAAACACATTGAACGAAAGTACCATCTTATCAAGGAAATCGTACATCGAGGAGACGTTACAATAACAAAAATTTCCTCCGAACAAAACATGCACTAG

mRNA sequence

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Protein sequence

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MLMYGSKDLILTGYTESDFQTDKDARKSTSGLVFTLNGGAVLWRSIKQSCIADSTMEAEYVAACEAAKEVVWIKKFLTNLEVFLNMHLLITLYYDNSGAVANSREPRSHK
QGKHIERKYHLIKEIVHRGDVTITKISSEQNMH

Cmc05g0132941 (gene) of Melon (Charmono) v1.1 genome