| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0036643.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 3.1e-95 | 78.92 | Show/hide |
Query: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
+G KTFDC FIGYAQNS YRFMCLNDKTINESRD EFFEHVFPLKQSL P+LS MHDP+ IVSE +T NL CEL+PRRSKRQR EK F
Subjt: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
Query: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
P FLSTFIVERRDEIDCNFTNLFLI+ED KTYQEALNS++S MWKE IKSELDSL MN W+LVDLP G+K I+CKWIFKRKTKPNG IERYKARLVVVG
Subjt: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
Query: YTQKQGIDYFDTYSPVTKITKIR
YTQKQG+DYFDTYSPVTKIT IR
Subjt: YTQKQGIDYFDTYSPVTKITKIR
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| KAA0038001.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 7.3e-97 | 81.94 | Show/hide |
Query: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
+GSKTFDC FIGYAQNSV YRFMCLNDKTINESRD EFFEHVF LKQSL P+LS+ MHDP+N IVSETH NTSNL CEL+ RRSKRQR EK F
Subjt: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
Query: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
P FLSTFIVERRDEID NFTNL+LIDEDPKTYQE LNS+E SMWKE IKSELDSLVMN WDLVDLP G+K I+C+WIFKRKTKPNGS+ERYKARLVVVG
Subjt: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
Query: YTQKQGIDYFDTYSPV
YTQKQGIDYFDTYSPV
Subjt: YTQKQGIDYFDTYSPV
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| KAA0042080.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 9.5e-97 | 80.44 | Show/hide |
Query: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
+GSKTFD IGYAQNS YRFMCLNDKTINESRD EFFEHVFPLKQSL P+LS+ MHDP+NP IVSE T +TSNL CEL+ RRSKRQR EK F
Subjt: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
Query: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
FLSTFIVERRDEID NFTNL+LIDEDPKTYQEALNS++ SMWKE I SELDSLVMN WDLVDLP +K I+CKWIFKRKTKPNGSIERYKARLVVVG
Subjt: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
Query: YTQKQGIDYFDTYSPVTKITKIRAL
YTQKQGIDYFDTYSPVTKIT IRAL
Subjt: YTQKQGIDYFDTYSPVTKITKIRAL
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| TYJ97996.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 2.3e-90 | 82.67 | Show/hide |
Query: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
+GSKTFDC FI YAQNSV YRFMC NDKTINESRD EFFEHVFPLKQSLS P+LS+ MHDP+NP IVSET T NTSNL CEL+ RSKRQR EK F
Subjt: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
Query: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
P FLSTFIVERRDEIDCNFTNL+LIDEDPKTYQEALNS+ESSMWKE IKSELDSLVMN WDLVDLP G+K I+CKWIFKRKTKPNGSIERYK RLVVVG
Subjt: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
Query: YT
YT
Subjt: YT
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| TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 1.6e-136 | 81.61 | Show/hide |
Query: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
+G KTFDC FIGYAQNS YRFMCLNDKTINESRD EFFEHVFPLKQSL P+LS MHDP+ IVSE T +T NL CEL+PRRSKRQR EK F
Subjt: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
Query: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
P FLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNS++S MWKE IKSELDSL MN W+LVDLP G+K I+CKWIFKRKTKPNG IERYKARLVVVG
Subjt: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
Query: YTQKQGIDYFDTYSPVTKITKIRALIALAVINGLLIHQMDVKTVFLNGDLEKEMYMTQPKGFKIPSQENKVCKLRKSLYGLKQAPKQWYEKFNNTLINN
YTQKQG+DYFDTYSPVTKIT IRALIALA I+ LLIHQMDVKT FLNG+LE+E+YMTQP+GFKI QENKVCKLRKSLYGLKQAPKQWYEKFNNTLI N
Subjt: YTQKQGIDYFDTYSPVTKITKIRALIALAVINGLLIHQMDVKTVFLNGDLEKEMYMTQPKGFKIPSQENKVCKLRKSLYGLKQAPKQWYEKFNNTLINN
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7T166 Ty1-copia retrotransposon protein | 1.5e-95 | 78.92 | Show/hide |
Query: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
+G KTFDC FIGYAQNS YRFMCLNDKTINESRD EFFEHVFPLKQSL P+LS MHDP+ IVSE +T NL CEL+PRRSKRQR EK F
Subjt: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
Query: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
P FLSTFIVERRDEIDCNFTNLFLI+ED KTYQEALNS++S MWKE IKSELDSL MN W+LVDLP G+K I+CKWIFKRKTKPNG IERYKARLVVVG
Subjt: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
Query: YTQKQGIDYFDTYSPVTKITKIR
YTQKQG+DYFDTYSPVTKIT IR
Subjt: YTQKQGIDYFDTYSPVTKITKIR
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| A0A5A7T8N6 Ty1-copia retrotransposon protein | 3.5e-97 | 81.94 | Show/hide |
Query: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
+GSKTFDC FIGYAQNSV YRFMCLNDKTINESRD EFFEHVF LKQSL P+LS+ MHDP+N IVSETH NTSNL CEL+ RRSKRQR EK F
Subjt: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
Query: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
P FLSTFIVERRDEID NFTNL+LIDEDPKTYQE LNS+E SMWKE IKSELDSLVMN WDLVDLP G+K I+C+WIFKRKTKPNGS+ERYKARLVVVG
Subjt: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
Query: YTQKQGIDYFDTYSPV
YTQKQGIDYFDTYSPV
Subjt: YTQKQGIDYFDTYSPV
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| A0A5A7TFH9 Ty1-copia retrotransposon protein | 4.6e-97 | 80.44 | Show/hide |
Query: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
+GSKTFD IGYAQNS YRFMCLNDKTINESRD EFFEHVFPLKQSL P+LS+ MHDP+NP IVSE T +TSNL CEL+ RRSKRQR EK F
Subjt: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
Query: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
FLSTFIVERRDEID NFTNL+LIDEDPKTYQEALNS++ SMWKE I SELDSLVMN WDLVDLP +K I+CKWIFKRKTKPNGSIERYKARLVVVG
Subjt: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
Query: YTQKQGIDYFDTYSPVTKITKIRAL
YTQKQGIDYFDTYSPVTKIT IRAL
Subjt: YTQKQGIDYFDTYSPVTKITKIRAL
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| A0A5D3BFX4 Ty1-copia retrotransposon protein | 1.1e-90 | 82.67 | Show/hide |
Query: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
+GSKTFDC FI YAQNSV YRFMC NDKTINESRD EFFEHVFPLKQSLS P+LS+ MHDP+NP IVSET T NTSNL CEL+ RSKRQR EK F
Subjt: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
Query: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
P FLSTFIVERRDEIDCNFTNL+LIDEDPKTYQEALNS+ESSMWKE IKSELDSLVMN WDLVDLP G+K I+CKWIFKRKTKPNGSIERYK RLVVVG
Subjt: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
Query: YT
YT
Subjt: YT
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| A0A5D3C5T2 Ty1-copia retrotransposon protein | 7.8e-137 | 81.61 | Show/hide |
Query: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
+G KTFDC FIGYAQNS YRFMCLNDKTINESRD EFFEHVFPLKQSL P+LS MHDP+ IVSE T +T NL CEL+PRRSKRQR EK F
Subjt: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLSVPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQRIEKIFH
Query: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
P FLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNS++S MWKE IKSELDSL MN W+LVDLP G+K I+CKWIFKRKTKPNG IERYKARLVVVG
Subjt: PYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVG
Query: YTQKQGIDYFDTYSPVTKITKIRALIALAVINGLLIHQMDVKTVFLNGDLEKEMYMTQPKGFKIPSQENKVCKLRKSLYGLKQAPKQWYEKFNNTLINN
YTQKQG+DYFDTYSPVTKIT IRALIALA I+ LLIHQMDVKT FLNG+LE+E+YMTQP+GFKI QENKVCKLRKSLYGLKQAPKQWYEKFNNTLI N
Subjt: YTQKQGIDYFDTYSPVTKITKIRALIALAVINGLLIHQMDVKTVFLNGDLEKEMYMTQPKGFKIPSQENKVCKLRKSLYGLKQAPKQWYEKFNNTLINN
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.6e-33 | 36.53 | Show/hide |
Query: TSNLGCELKPRRSKRQRIEKIFHPYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKW
T N G E+ RRS+R + + P +++ N +F ++ P ++ E + S W+E I +EL++ +N W + P+ + +W
Subjt: TSNLGCELKPRRSKRQRIEKIFHPYFLSTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKW
Query: IFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITKIRALIALAVINGLLIHQMDVKTVFLNGDLEKEMYMTQPKGFKIPSQENKVCKLRKS
+F K G+ RYKARLV G+TQK IDY +T++PV +I+ R +++L + L +HQMDVKT FLNG L++E+YM P+G I + VCKL K+
Subjt: IFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITKIRALIALAVINGLLIHQMDVKTVFLNGDLEKEMYMTQPKGFKIPSQENKVCKLRKS
Query: LYGLKQAPKQWYEKFNNTL
+YGLKQA + W+E F L
Subjt: LYGLKQAPKQWYEKFNNTL
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 9.4e-47 | 36.13 | Show/hide |
Query: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLS-------VPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQ
+ K+ C FIGY YR K + SRDV F E +S +P NP T + G ++ +
Subjt: IGSKTFDCAFIGYAQNSVTYRFMCLNDKTINESRDVEFFEHVFPLKQSLS-------VPALSRSMHDPKNPLIVSETHAFRTANTSNLGCELKPRRSKRQ
Query: RIEKIFHP-------YFLSTFIVERRDEIDCNFTNLFLI--DEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTK
+E++ HP L R + T LI D +P++ +E L+ E + + ++ E++SL N + LV+LPKG + +KCKW+FK K
Subjt: RIEKIFHP-------YFLSTFIVERRDEIDCNFTNLFLI--DEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTK
Query: PNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITKIRALIALAVINGLLIHQMDVKTVFLNGDLEKEMYMTQPKGFKIPSQENKVCKLRKSLYGLKQA
+ + RYKARLVV G+ QK+GID+ + +SPV K+T IR +++LA L + Q+DVKT FL+GDLE+E+YM QP+GF++ +++ VCKL KSLYGLKQA
Subjt: PNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITKIRALIALAVINGLLIHQMDVKTVFLNGDLEKEMYMTQPKGFKIPSQENKVCKLRKSLYGLKQA
Query: PKQWYEKFNN
P+QWY KF++
Subjt: PKQWYEKFNN
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| P92520 Uncharacterized mitochondrial protein AtMg00820 | 2.8e-14 | 36.19 | Show/hide |
Query: IDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITKIRA
I ++PK+ + +++ W + ++ ELD+L N+ W LV P + CKW+FK K +G+++R KARLV G+ Q++GI + +TYSPV + IR
Subjt: IDEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSIKCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITKIRA
Query: LIALA
++ +A
Subjt: LIALA
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.5e-36 | 43.93 | Show/hide |
Query: DEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSI-KCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITKIRA
+ +P+T A+ +++ W+ + SE+++ + N WDLV P +I C+WIF +K +GS+ RYKARLV GY Q+ G+DY +T+SPV K T IR
Subjt: DEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSI-KCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITKIRA
Query: LIALAVINGLLIHQMDVKTVFLNGDLEKEMYMTQPKGFKIPSQENKVCKLRKSLYGLKQAPKQWYEKFNNTLI
++ +AV I Q+DV FL G L ++YM+QP GF + N VCKLRK+LYGLKQAP+ WY + N L+
Subjt: LIALAVINGLLIHQMDVKTVFLNGDLEKEMYMTQPKGFKIPSQENKVCKLRKSLYGLKQAPKQWYEKFNNTLI
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 5.7e-36 | 43.35 | Show/hide |
Query: DEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSI-KCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITKIRA
+ +P+T A+ +M+ W++ + SE+++ + N WDLV P S +I C+WIF +K +GS+ RYKARLV GY Q+ G+DY +T+SPV K T IR
Subjt: DEDPKTYQEALNSMESSMWKEVIKSELDSLVMNQAWDLVDLPKGSKSI-KCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITKIRA
Query: LIALAVINGLLIHQMDVKTVFLNGDLEKEMYMTQPKGFKIPSQENKVCKLRKSLYGLKQAPKQWYEKFNNTLI
++ +AV I Q+DV FL G L E+YM+QP GF + + VC+LRK++YGLKQAP+ WY + L+
Subjt: LIALAVINGLLIHQMDVKTVFLNGDLEKEMYMTQPKGFKIPSQENKVCKLRKSLYGLKQAPKQWYEKFNNTLI
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