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Cmc05g0133121 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc05g0133121
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr05:13627045..13627455
RNA-Seq ExpressionCmc05g0133121
SyntenyCmc05g0133121
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032244.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.9e-7097.74Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS
        M VKNALLNGTLSEEVYIQPPYGTFPPHHK CLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS
Subjt:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGY
        DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDG+
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGY

KAA0060225.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.9e-6388.97Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS
        M VKNA LNGTLSEEVY++PP GT PP HKVCLL RALYGLKQAPRAWFATFSSTITQ+GFTSSPHDTALFTRHTPQGIVLLLLYV DMIITG+DPQ IS
Subjt:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS
        DLQHYLGQHFEMKDLGSLNYFLGL+VS+RS+GYLLS
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS

KAA0064888.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.5e-6288.97Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS
        M VKNA LNGTLSEEVY++PP GT  P HKVCLL RALYGLKQAPRAWFATFSSTITQ+GFTSSPHDTALFTRHTPQGIVLLLLYV DMIITG+DPQ IS
Subjt:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS
        DLQHYLGQHFEMKDLGSLNYFLGL+VS+RSDGYLLS
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS

TYK21532.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.0e-6288.97Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS
        M VKNA LNGTLSEEVY++PP GT  P HKVCLL RALYGLKQAPRAWFATFSSTITQ+GFTSSPHDTALFTRHTPQGIVLLLLYV DMIITG+DPQ IS
Subjt:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS
        DLQHYLGQHFEMKDLGSLNYFLGL+VS+RSDGYLLS
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS

TYK30390.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.5e-6288.24Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS
        M VKNA LNGTLSEE+Y++PP GT  P HKVCLL RALYGLKQAPRAWFATFSSTITQ+GFTSSPHDTALFTRHTPQGIVLLLLYV DMIITG+DPQ IS
Subjt:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS
        DLQHYLGQHFEMKDLGSLNYFLGL+VS+RSDGYLLS
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS

TrEMBL top hitse value%identityAlignment
A0A5A7V2X4 Retrovirus-related Pol polyprotein from transposon TNT 1-943.4e-6388.97Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS
        M VKNA LNGTLSEEVY++PP GT PP HKVCLL RALYGLKQAPRAWFATFSSTITQ+GFTSSPHDTALFTRHTPQGIVLLLLYV DMIITG+DPQ IS
Subjt:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS
        DLQHYLGQHFEMKDLGSLNYFLGL+VS+RS+GYLLS
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS

A0A5A7VBA1 Retrovirus-related Pol polyprotein from transposon TNT 1-947.5e-6388.97Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS
        M VKNA LNGTLSEEVY++PP GT  P HKVCLL RALYGLKQAPRAWFATFSSTITQ+GFTSSPHDTALFTRHTPQGIVLLLLYV DMIITG+DPQ IS
Subjt:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS
        DLQHYLGQHFEMKDLGSLNYFLGL+VS+RSDGYLLS
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS

A0A5D3DD70 Retrovirus-related Pol polyprotein from transposon TNT 1-949.8e-6388.97Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS
        M VKNA LNGTLSEEVY++PP GT  P HKVCLL RALYGLKQAPRAWFATFSSTITQ+GFTSSPHDTALFTRHTPQGIVLLLLYV DMIITG+DPQ IS
Subjt:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS
        DLQHYLGQHFEMKDLGSLNYFLGL+VS+RSDGYLLS
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS

A0A5D3DEY3 Putative mitochondrial protein2.8e-7097.74Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS
        M VKNALLNGTLSEEVYIQPPYGTFPPHHK CLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS
Subjt:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGY
        DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDG+
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGY

A0A5D3E4B0 Putative mitochondrial protein2.2e-6288.24Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS
        M VKNA LNGTLSEE+Y++PP GT  P HKVCLL RALYGLKQAPRAWFATFSSTITQ+GFTSSPHDTALFTRHTPQGIVLLLLYV DMIITG+DPQ IS
Subjt:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS
        DLQHYLGQHFEMKDLGSLNYFLGL+VS+RSDGYLLS
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.4e-2035.51Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALF--TRHTPQGIVLLLLYVGDMIITGSDPQT
        M VK A LNGTL EE+Y++ P G       VC L +A+YGLKQA R WF  F   + +  F +S  D  ++   +      + +LLYV D++I   D   
Subjt:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALF--TRHTPQGIVLLLLYVGDMIITGSDPQT

Query:  ISDLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS
        +++ + YL + F M DL  + +F+G+++  + D   LS
Subjt:  ISDLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.4e-2040.31Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYG--TFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTAL-FTRHTPQGIVLLLLYVGDMIITGSDPQ
        + VK A L+G L EE+Y++ P G       H VC L ++LYGLKQAPR W+  F S +    +  +  D  + F R +    ++LLLYV DM+I G D  
Subjt:  MGVKNALLNGTLSEEVYIQPPYG--TFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTAL-FTRHTPQGIVLLLLYVGDMIITGSDPQ

Query:  TISDLQHYLGQHFEMKDLGSLNYFLGLKV
         I+ L+  L + F+MKDLG     LG+K+
Subjt:  TISDLQHYLGQHFEMKDLGSLNYFLGLKV

P25600 Putative transposon Ty5-1 protein YCL074W1.3e-1632.84Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHK--VCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQT
        M V  A LN T+ E +Y++ P G     +   V  L   +YGLKQAP  W    ++T+ ++GF     +  L+ R T  G + + +YV D+++    P+ 
Subjt:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHK--VCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQT

Query:  ISDLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDG
           ++  L + + MKDLG ++ FLGL + Q S+G
Subjt:  ISDLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDG

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.6e-2441.3Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYGTFPPH--HKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQT
        + V NA L GTL+++VY+  P G       + VC L +ALYGLKQAPRAW+    + +  +GF +S  DT+LF     + IV +L+YV D++ITG+DP  
Subjt:  MGVKNALLNGTLSEEVYIQPPYGTFPPH--HKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQT

Query:  ISDLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS
        + +    L Q F +KD   L+YFLG++  +   G  LS
Subjt:  ISDLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.8e-2239.86Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHK--VCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQT
        + V NA L GTL++EVY+  P G         VC L +A+YGLKQAPRAW+    + +  VGF +S  DT+LF     + I+ +L+YV D++ITG+D   
Subjt:  MGVKNALLNGTLSEEVYIQPPYGTFPPHHK--VCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQT

Query:  ISDLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS
        +      L Q F +K+   L+YFLG++  +   G  LS
Subjt:  ISDLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.2e-2238.13Show/hide
Query:  MGVKNALLNGTLSEEVYIQPPYG-------TFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITG
        + + NA LNG L EE+Y++ P G       + PP + VC L +++YGLKQA R WF  FS T+   GF  S  D   F + T    + +L+YV D+II  
Subjt:  MGVKNALLNGTLSEEVYIQPPYG-------TFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITG

Query:  SDPQTISDLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDG
        ++   + +L+  L   F+++DLG L YFLGL++++ + G
Subjt:  SDPQTISDLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDG

ATMG00810.1 DNA/RNA polymerases superfamily protein1.3e-0643.64Show/hide
Query:  LLLYVGDMIITGSDPQTISDLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS
        LLLYV D+++TGS    ++ L   L   F MKDLG ++YFLG+++     G  LS
Subjt:  LLLYVGDMIITGSDPQTISDLQHYLGQHFEMKDLGSLNYFLGLKVSQRSDGYLLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTCAAAAATGCTTTACTTAATGGGACTCTTTCTGAAGAAGTCTATATCCAGCCACCTTATGGTACTTTTCCTCCTCATCACAAGGTGTGCCTCCTATGTCGAGC
ACTATATGGTTTGAAACAGGCTCCACGAGCTTGGTTTGCCACATTTAGCTCTACCATCACTCAAGTTGGATTTACTTCTAGTCCTCATGACACTGCGCTCTTTACTCGCC
ACACACCCCAGGGTATTGTTCTTCTTCTTCTTTATGTTGGTGATATGATTATCACTGGTAGTGATCCACAGACCATATCCGATCTCCAACATTACCTTGGTCAACATTTT
GAAATGAAAGACCTTGGGTCTCTCAACTACTTTCTTGGCCTTAAAGTCTCTCAACGCTCGGACGGGTATTTATTGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGTCAAAAATGCTTTACTTAATGGGACTCTTTCTGAAGAAGTCTATATCCAGCCACCTTATGGTACTTTTCCTCCTCATCACAAGGTGTGCCTCCTATGTCGAGC
ACTATATGGTTTGAAACAGGCTCCACGAGCTTGGTTTGCCACATTTAGCTCTACCATCACTCAAGTTGGATTTACTTCTAGTCCTCATGACACTGCGCTCTTTACTCGCC
ACACACCCCAGGGTATTGTTCTTCTTCTTCTTTATGTTGGTGATATGATTATCACTGGTAGTGATCCACAGACCATATCCGATCTCCAACATTACCTTGGTCAACATTTT
GAAATGAAAGACCTTGGGTCTCTCAACTACTTTCTTGGCCTTAAAGTCTCTCAACGCTCGGACGGGTATTTATTGTCTTAA
Protein sequenceShow/hide protein sequence
MGVKNALLNGTLSEEVYIQPPYGTFPPHHKVCLLCRALYGLKQAPRAWFATFSSTITQVGFTSSPHDTALFTRHTPQGIVLLLLYVGDMIITGSDPQTISDLQHYLGQHF
EMKDLGSLNYFLGLKVSQRSDGYLLS