CuGenDBv2

Gene ID	Cmc05g0133341
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr05:13949567..13950046
RNA-Seq Expression	Cmc05g0133341
Synteny	Cmc05g0133341
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025466.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

8.4e-60

75.66

Show/hide

Query:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS
        MI TQF CP+K L TDNAL+YKDST+LSF SQQGTLVQRSCPHTSQ++  AERKHRHILDSV ALLLS SC + FWG+  LTS+Y INRLPSSVLQNIS 
Subjt:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS

Query:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF
        FERLYGTPPNYSNLK FG  CFVLL   EHTKL+P A   CF  YD EHKGF
Subjt:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF

KAA0037551.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.4e-59

74.34

Show/hide

Query:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS
        MI TQF CP+K L TDNAL+YKDST+LSF SQQGTLVQRSCPHTSQ++  A+RKHRHILDSV ALLLS SC + FWG+  LTS+Y INRLPSSVLQNIS 
Subjt:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS

Query:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF
        FE+LYGTPPNYSNLK+FG  CFVLLH  EHTKL+P     CF  YD EHKGF
Subjt:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF

KAA0050251.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.2e-59

74.34

Show/hide

Query:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS
        MI TQF CP+K L TDNAL+YKDST+LSF SQQGTLVQRSCPHTSQ++   ERKH HILDSV ALLLS SC K FWG+  LTS+Y+INRLPSSVLQNIS 
Subjt:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS

Query:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF
        FE+LYGTPPNYSNLK+FG  CFVLLH  EHTKL+P A   CF  Y  EHKGF
Subjt:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF

KAA0064888.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

8.4e-60

Show/hide

Query:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS
        MI TQF CP+K L TDNAL+YKDST+LSF SQQGTLVQRSCPHTSQ++  AERKHRHILDSV ALLLS SC + FWG+  LTS+Y INRLPSSVLQNIS 
Subjt:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS

Query:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF
        FE+LYGTPPNYSNLK+FG  CFVLLH  EHTKL+P A   CF  Y  EHKGF
Subjt:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF

TYJ98155.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.2e-59

74.34

Show/hide

Query:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS
        MI TQF CP+K L TDNAL+YKDST+LSF SQQGTLVQRSCPHTSQ++   ERKH HILDSV ALLLS SC K FWG+  LTS+Y+INRLPSSVLQNIS 
Subjt:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS

Query:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF
        FE+LYGTPPNYSNLK+FG  CFVLLH  EHTKL+P A   CF  Y  EHKGF
Subjt:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SI12 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.1e-60

75.66

Show/hide

Query:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS
        MI TQF CP+K L TDNAL+YKDST+LSF SQQGTLVQRSCPHTSQ++  AERKHRHILDSV ALLLS SC + FWG+  LTS+Y INRLPSSVLQNIS 
Subjt:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS

Query:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF
        FERLYGTPPNYSNLK FG  CFVLL   EHTKL+P A   CF  YD EHKGF
Subjt:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF

A0A5A7U9P9 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.5e-59

74.34

Show/hide

Query:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS
        MI TQF CP+K L TDNAL+YKDST+LSF SQQGTLVQRSCPHTSQ++   ERKH HILDSV ALLLS SC K FWG+  LTS+Y+INRLPSSVLQNIS 
Subjt:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS

Query:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF
        FE+LYGTPPNYSNLK+FG  CFVLLH  EHTKL+P A   CF  Y  EHKGF
Subjt:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF

A0A5A7VBA1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.1e-60

Show/hide

Query:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS
        MI TQF CP+K L TDNAL+YKDST+LSF SQQGTLVQRSCPHTSQ++  AERKHRHILDSV ALLLS SC + FWG+  LTS+Y INRLPSSVLQNIS 
Subjt:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS

Query:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF
        FE+LYGTPPNYSNLK+FG  CFVLLH  EHTKL+P A   CF  Y  EHKGF
Subjt:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF

A0A5D3BI36 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.5e-59

74.34

Show/hide

Query:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS
        MI TQF CP+K L TDNAL+YKDST+LSF SQQGTLVQRSCPHTSQ++   ERKH HILDSV ALLLS SC K FWG+  LTS+Y+INRLPSSVLQNIS 
Subjt:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS

Query:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF
        FE+LYGTPPNYSNLK+FG  CFVLLH  EHTKL+P A   CF  Y  EHKGF
Subjt:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF

A0A5D3BTS2 Putative mitochondrial protein

6.9e-60

74.34

Show/hide

Query:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS
        MI TQF CP+K L TDNAL+YKDST+LSF SQQGTLVQRSCPHTSQ++  A+RKHRHILDSV ALLLS SC + FWG+  LTS+Y INRLPSSVLQNIS 
Subjt:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS

Query:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF
        FE+LYGTPPNYSNLK+FG  CFVLLH  EHTKL+P     CF  YD EHKGF
Subjt:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGF

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.4e-09

29.14

Show/hide

Query:  FFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS--FER
        F   V  L+ DN  +Y  + +  F  ++G     + PHT Q +  +ER  R I +    ++      K+FWG+  LT+ Y INR+PS  L + S   +E 
Subjt:  FFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS--FER

Query:  LYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGFSM
         +   P   +L+ FG+T +V + +++  K    +  S F  Y  E  GF +
Subjt:  LYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGFSM

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

3.1e-17

31.61

Show/hide

Query:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS
        ++  +F   +   ++DN  ++    +  +FSQ G     S PHT + +  +ERKHRHI+++   LL   S  K +W      ++Y INRLP+ +LQ  S 
Subjt:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS

Query:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGFSML
        F++L+GT PNY  L+ FG  C+  L      KL   +    F  Y +    +  L
Subjt:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGFSML

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.8e-17

32.26

Show/hide

Query:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS
        ++  +F   +  L++DN  ++    +  + SQ G     S PHT + +  +ERKHRHI++    LL   S  K +W      ++Y INRLP+ +LQ  S 
Subjt:  MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISS

Query:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGFSML
        F++L+G PPNY  LK FG  C+  L      KL+  +    F  Y +    +  L
Subjt:  FERLYGTPPNYSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGFSML

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATTCACACTCAATTCTTTTGTCCTGTCAAAATCCTTCACACTGATAATGCTTTGGACTATAAAGACTCCACAATTCTTTCTTTTTTCTCCCAACAGGGCACTCTTGT
TCAGCGCTCTTGTCCACACACCTCTCAAGAAAGTAGGCATGCTGAGCGTAAACATCGCCACATTCTTGACTCGGTACATGCCCTCCTTCTTTCCATCTCCTGTCTTAAAA
ATTTTTGGGGTAAGGTTACTCTTACATCTATCTATAACATCAACCGTCTTCCTTCCTCTGTTCTTCAAAATATTTCATCATTCGAAAGACTATATGGTACTCCTCCCAAC
TACTCTAACCTTAAAAGTTTTGGTAGTACATGCTTTGTTCTTCTTCACTCTCAGGAACACACTAAACTTAAACCACATGCCCATTGCTCTTGCTTTTTTAGCTATGACAT
AGAACATAAAGGTTTTTCGATGTTGGGATCCTTTTTCTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MIHTQFFCPVKILHTDNALDYKDSTILSFFSQQGTLVQRSCPHTSQESRHAERKHRHILDSVHALLLSISCLKNFWGKVTLTSIYNINRLPSSVLQNISSFERLYGTPPN
YSNLKSFGSTCFVLLHSQEHTKLKPHAHCSCFFSYDIEHKGFSMLGSFF

Cmc05g0133341 (gene) of Melon (Charmono) v1.1 genome