| GenBank top hits | e value | %identity | Alignment |
|---|
| ADJ18449.1 gag/pol protein, partial [Bryonia dioica] | 1.4e-94 | 82.3 | Show/hide |
Query: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
MSQASYIDK+LSRYKMQNSKKG LP+++GIHL KEQCPKTPQEVEDMRNIPY+S VGSLMY M CTRP+ICYS+G+VSRYQSNPGRD+ VKNILKYL
Subjt: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
Query: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
+T++YM VYG KDLIL YTDSDFQ++K ARKSTSGSVFTLN GAVVWRSVKQTCIADSTME EY+AACE+ KEAVWLRKFLTDL+V+PNMHLPITLYCD
Subjt: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
Query: NSSAVANSR
NS AVANS+
Subjt: NSSAVANSR
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| KAA0026227.1 gag/pol protein [Cucumis melo var. makuwa] | 2.4e-91 | 81.25 | Show/hide |
Query: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
MSQ SYIDKMLSRYKMQNSKK LL +YGIHL KEQCPKTPQEVEDM NIPYAS VGSLMY M CTRP+ICYS+G+VSRYQSNPGRD+ VKNILKYL
Subjt: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
Query: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
+TKDYM VYG+KDLIL YT+ DFQT+K ARKSTSGSVFTLNEGAVVWRS+KQ+ IADSTME EY+AACE+ KEAVWL+KFLTDL+++PNMHLPITLYCD
Subjt: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
Query: NSSAVANS
NS AVANS
Subjt: NSSAVANS
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| KAA0051332.1 gag/pol protein [Cucumis melo var. makuwa] | 2.0e-114 | 99.52 | Show/hide |
Query: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
Subjt: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
Query: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPN+HLPITLYCD
Subjt: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
Query: NSSAVANSR
NSSAVANSR
Subjt: NSSAVANSR
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| TYK03644.1 gag/pol protein [Cucumis melo var. makuwa] | 3.8e-92 | 80.86 | Show/hide |
Query: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
MSQ SYIDKMLSRYKM NSKKGLLPY+YGIHL KEQCPKTPQEVEDM NIPYAS VGSLMYVM CTRPNICYS+G+VSR QS PGRD+ TVKNILKYL
Subjt: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
Query: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
+TKDYM VYG+KDLIL YTD FQT+K ARKSTSG VFT+N GAVVWRS+KQ+CIADSTME EY+A CE+ KEAVWL+KFLTDL+V+PNMHLP TLYCD
Subjt: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
Query: NSSAVANSR
NS AV NSR
Subjt: NSSAVANSR
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| TYK23883.1 gag/pol protein [Cucumis melo var. makuwa] | 3.6e-111 | 97.13 | Show/hide |
Query: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPK PQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRI VKNILKYLT
Subjt: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
Query: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
KTKDYMHVYGTKD+ILAIYTDS+FQTNKYA KSTSGSVFTLN GAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
Subjt: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
Query: NSSAVANSR
NSSAVANSR
Subjt: NSSAVANSR
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SNE2 Gag/pol protein | 1.2e-91 | 81.25 | Show/hide |
Query: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
MSQ SYIDKMLSRYKMQNSKK LL +YGIHL KEQCPKTPQEVEDM NIPYAS VGSLMY M CTRP+ICYS+G+VSRYQSNPGRD+ VKNILKYL
Subjt: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
Query: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
+TKDYM VYG+KDLIL YT+ DFQT+K ARKSTSGSVFTLNEGAVVWRS+KQ+ IADSTME EY+AACE+ KEAVWL+KFLTDL+++PNMHLPITLYCD
Subjt: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
Query: NSSAVANS
NS AVANS
Subjt: NSSAVANS
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| A0A5A7U686 Gag/pol protein | 9.9e-115 | 99.52 | Show/hide |
Query: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
Subjt: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
Query: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPN+HLPITLYCD
Subjt: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
Query: NSSAVANSR
NSSAVANSR
Subjt: NSSAVANSR
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| A0A5D3BX45 Gag/pol protein | 1.8e-92 | 80.86 | Show/hide |
Query: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
MSQ SYIDKMLSRYKM NSKKGLLPY+YGIHL KEQCPKTPQEVEDM NIPYAS VGSLMYVM CTRPNICYS+G+VSR QS PGRD+ TVKNILKYL
Subjt: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
Query: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
+TKDYM VYG+KDLIL YTD FQT+K ARKSTSG VFT+N GAVVWRS+KQ+CIADSTME EY+A CE+ KEAVWL+KFLTDL+V+PNMHLP TLYCD
Subjt: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
Query: NSSAVANSR
NS AV NSR
Subjt: NSSAVANSR
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| A0A5D3DJT9 Gag/pol protein | 1.8e-111 | 97.13 | Show/hide |
Query: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPK PQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRI VKNILKYLT
Subjt: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
Query: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
KTKDYMHVYGTKD+ILAIYTDS+FQTNKYA KSTSGSVFTLN GAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
Subjt: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
Query: NSSAVANSR
NSSAVANSR
Subjt: NSSAVANSR
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| E2GK51 Gag/pol protein (Fragment) | 6.7e-95 | 82.3 | Show/hide |
Query: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
MSQASYIDK+LSRYKMQNSKKG LP+++GIHL KEQCPKTPQEVEDMRNIPY+S VGSLMY M CTRP+ICYS+G+VSRYQSNPGRD+ VKNILKYL
Subjt: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
Query: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
+T++YM VYG KDLIL YTDSDFQ++K ARKSTSGSVFTLN GAVVWRSVKQTCIADSTME EY+AACE+ KEAVWLRKFLTDL+V+PNMHLPITLYCD
Subjt: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
Query: NSSAVANSR
NS AVANS+
Subjt: NSSAVANSR
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 8.6e-23 | 32.86 | Show/hide |
Query: MSQASYIDKMLSRYKMQ--NSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKY
+SQ++Y+ K+LS++ M+ N+ LP K LL ED N P S +G LMY+M CTRP++ ++ ++SRY S + +K +L+Y
Subjt: MSQASYIDKMLSRYKMQ--NSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKY
Query: LTKTKDYMHVYGTKDLI----LAIYTDSDFQTNKYARKSTSGSVFTLNE-GAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHL
L T D M + K+L + Y DSD+ ++ RKST+G +F + + + W + +Q +A S+ E EY+A E+ +EA+WL+ LT + + +
Subjt: LTKTKDYMHVYGTKDLI----LAIYTDSDFQTNKYARKSTSGSVFTLNE-GAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHL
Query: PITLYCDNSSAVA
PI +Y DN ++
Subjt: PITLYCDNSSAVA
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| P0CV72 Secreted RxLR effector protein 161 | 3.3e-22 | 42.22 | Show/hide |
Query: MRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLTKTKDYMHVY---GTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNE
M+N+PY S VG++MY+M TRP++ ++G++S++ S+P + +K +L+YL T+ Y + GT L+ Y+D+D+ + +R+STSG +F LN
Subjt: MRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLTKTKDYMHVY---GTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNE
Query: GAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWL
G V WRS KQ +A S+ E EY+A E+T+EAVWL
Subjt: GAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWL
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.4e-41 | 42.58 | Show/hide |
Query: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
+SQ YI+++L R+ M+N+K P + L K+ CP T +E +M +PY+S VGSLMY M CTRP+I +++G+VSR+ NPG+++ VK IL+YL
Subjt: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
Query: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
T +G D IL YTD+D + RKS++G +FT + GA+ W+S Q C+A ST E EYIAA E+ KE +WL++FL +L + ++ +YCD
Subjt: KTKDYMHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYCD
Query: NSSAVANSR
+ SA+ S+
Subjt: NSSAVANSR
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.1e-14 | 29.27 | Show/hide |
Query: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
+SQ YI +L+R M +K P L K E Y VGSL Y ++ TRP+I Y++ +S++ P ++ +K IL+YL
Subjt: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
Query: KTKDY-MHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYC
T ++ + + L L Y+D+D+ +K ST+G + L + W S KQ + S+ E EY + ++ E W+ LT+L + + P +YC
Subjt: KTKDY-MHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYC
Query: DNSSA
DN A
Subjt: DNSSA
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.0e-15 | 29.27 | Show/hide |
Query: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
+SQ Y +L+R M +K P L K P E Y VGSL Y ++ TRP++ Y++ +S+Y P D+ +K +L+YL
Subjt: MSQASYIDKMLSRYKMQNSKKGLLPYKYGIHLLKEQCPKTPQEVEDMRNIPYASTVGSLMYVMSCTRPNICYSIGMVSRYQSNPGRDYRITVKNILKYLT
Query: KTKDY-MHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYC
T D+ + + L L Y+D+D+ + ST+G + L + W S KQ + S+ E EY + ++ E W+ LT+L + + P +YC
Subjt: KTKDY-MHVYGTKDLILAIYTDSDFQTNKYARKSTSGSVFTLNEGAVVWRSVKQTCIADSTMEVEYIAACESTKEAVWLRKFLTDLKVIPNMHLPITLYC
Query: DNSSA
DN A
Subjt: DNSSA
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