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Cmc05g0134331 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc05g0134331
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationCMiso1.1chr05:15845171..15846116
RNA-Seq ExpressionCmc05g0134331
SyntenyCmc05g0134331
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAK70407.1 pol polyprotein [Citrus x paradisi]7.1e-1246.67Show/hide
Query:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP
        ++DGLFKLN++T+  K  INNK ++ AY++ES      RL HVN NSL + I M  IPNF  D  H+C+ CVE+K+T++ F +  R ++P
Subjt:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP

CAN66576.1 hypothetical protein VITISV_016964 [Vitis vinifera]6.6e-1854.44Show/hide
Query:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP
        LSDGLFK+N++TVV KSI NNK+ + AY+++S      RL HVN ++LCR I ++ +P FN D NH+CE CVESK+TK  FH   R T+P
Subjt:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP

RVW26252.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.1e-1755.56Show/hide
Query:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP
        LSDGLFK+N++TVV KSI NNK+ + AY++ES      RL HVN ++L R I ++ +P FN DTNH+CE CVESK+TK  FH   R T+P
Subjt:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP

RVX01757.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.9e-1244.44Show/hide
Query:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP
        +SDG++KLN++T++  ++  NK ST  Y++ES      RL HVN ++LCR I +N IP F  ++NH+CE CVE+K+T++ F    R T+P
Subjt:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP

XP_035844496.1 LOW QUALITY PROTEIN: uncharacterized protein LOC110872515, partial [Helianthus annuus]2.4e-1248.86Show/hide
Query:  DGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP
        +G+FK+N++ VV+++   N+ S+  Y++ES      RL HVNLNSL R I +NLIP F+ D+NH+CE CVESK+T++ F    RIT+P
Subjt:  DGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP

TrEMBL top hitse value%identityAlignment
A0A2N9HT58 Integrase catalytic domain-containing protein1.8e-1348.89Show/hide
Query:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP
        LSDGLFK+N++T+V   I  NK  + AY++ES      RL+HVN  +L R I +NL+P F  DTNH+CE CVE+K+T+  FH   R + P
Subjt:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP

A0A2N9IGG8 Integrase catalytic domain-containing protein6.9e-1347.78Show/hide
Query:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP
        LSDGLFK+N++T+V   I  NK  + AY++ES      RL HVN  +L R + +NL+P F  DTNH+CE CVE+K+T+  FH   R + P
Subjt:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP

A0A438CSS8 Retrovirus-related Pol polyprotein from transposon TNT 1-945.5e-1855.56Show/hide
Query:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP
        LSDGLFK+N++TVV KSI NNK+ + AY++ES      RL HVN ++L R I ++ +P FN DTNH+CE CVESK+TK  FH   R T+P
Subjt:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP

A0A5B7C678 gag_pre-integrs domain-containing protein (Fragment)2.8e-1448.89Show/hide
Query:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP
        +SDGLFKLN++T++SK++  NK ++ AYI+ES      RL HVN +++ R I + L+P  N D NH+CE+CVESK+T+  FH   R T+P
Subjt:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP

A5CBN2 Uncharacterized protein3.2e-1854.44Show/hide
Query:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP
        LSDGLFK+N++TVV KSI NNK+ + AY+++S      RL HVN ++LCR I ++ +P FN D NH+CE CVESK+TK  FH   R T+P
Subjt:  LSDGLFKLNILTVVSKSIINNKVSTFAYIIES------RLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAAGTTTATACTTTCCAATAATGATATGTATGTTGGAAAGGGTTTCTTTGAGTGATGGTTTGTTTAAGTTAAATATATTAACAGTTGTATCCAAAAGTATTATTAA
TAATAAAGTATCTACTTTTGCTTATATCATTGAGTCTAGACTAGAACATGTTAATCTCAATTCTTTATGTAGGCAAATTATTATGAATTTGATTCCAAATTTCAACTTTG
ATACAAATCATAGATGTGAGGTGTGTGTGGAATCAAAAATAACCAAAGCACATTTTCATTTAACTAATAGAATTACTAAACCTTGA
mRNA sequenceShow/hide mRNA sequence
GTGCTTATCAAGATTTTCCTTGGGACATAACCTCGACTTCCAATATACTACTCACAATTTTGTTAAGAAAGTTGGGTAAAAATTTACTTGGAAGGTTTTTTTTAGAATGT
TCAGCGAAAAATGCTCAAGCTCATATCACAGAAGTTGATGAGGTATTAGATGGTGTTGCAGATACTGACCTTTGTACAGTCATTTCATAATGCAACATTGTCGACAATTC
CAAGAAATGGTGGGTAGACACCGGTGCCAACAAGAATATGTTCACATCATCAGTCTCTATTGAAGAATGATTATTTATGAGTAACTCTTCTACTTCAAAGGTTGAGGGAT
AGGAAAAAGTGATCGTTAAAATTATTTCTGCAAGGAACTCACTCTCAACAATGTGTTTCATGTTCCTAACATTTGCAAGAACTTGGTTTCTGGTTCATTGCTTAGTAAGA
ATGACTTTAAGTTAGTCTTTGCATATGATAAGTTTATACTTTCCAATAATGATATGTATGTTGGAAAGGGTTTCTTTGAGTGATGGTTTGTTTAAGTTAAATATATTAAC
AGTTGTATCCAAAAGTATTATTAATAATAAAGTATCTACTTTTGCTTATATCATTGAGTCTAGACTAGAACATGTTAATCTCAATTCTTTATGTAGGCAAATTATTATGA
ATTTGATTCCAAATTTCAACTTTGATACAAATCATAGATGTGAGGTGTGTGTGGAATCAAAAATAACCAAAGCACATTTTCATTTAACTAATAGAATTACTAAACCTTGA
Protein sequenceShow/hide protein sequence
MISLYFPIMICMLERVSLSDGLFKLNILTVVSKSIINNKVSTFAYIIESRLEHVNLNSLCRQIIMNLIPNFNFDTNHRCEVCVESKITKAHFHLTNRITKP