; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc05g0135231 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc05g0135231
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPol protein
Genome locationCMiso1.1chr05:17255178..17255723
RNA-Seq ExpressionCmc05g0135231
SyntenyCmc05g0135231
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAO45752.1 pol protein [Cucumis melo subsp. melo]5.9e-9495Show/hide
Query:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD
        MLRACALEFPGSW SHLHLMEFAYNNS+QATIGM PFEALY +CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRS M TAQSRQKSYADVRRKDLEF+
Subjt:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD

Query:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE
        VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLE
Subjt:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE

KAA0042366.1 pol protein [Cucumis melo var. makuwa]4.5e-9495Show/hide
Query:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD
        MLRACALEFP SW SHLHLMEFAYNNS+QATIGM PFEALY KCCRSPVCWGEVGEQRLMGPEL+QSTNEAIQKIRS MQT QSRQKSYADVRRKDLEFD
Subjt:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD

Query:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE
        VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLE
Subjt:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE

KAA0043401.1 pol protein [Cucumis melo var. makuwa]3.5e-9494.44Show/hide
Query:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD
        MLRACALEFPGSW SHLHLMEFAYNNS+QATIGM PFEALY +CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRS M TAQSRQKSYADVRRKDLEF+
Subjt:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD

Query:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE
        +GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFH+SMLRKYVPDPSHVVDYEPLE
Subjt:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE

KAA0050751.1 pol protein [Cucumis melo var. makuwa]2.7e-9495.56Show/hide
Query:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD
        MLRACALEFPGSW SHLHLMEFAYNNS+QATIGM PFEALY KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRS M TAQSRQKSYADVRRKDLEF+
Subjt:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD

Query:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE
        VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLE
Subjt:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE

KAA0064005.1 pol protein [Cucumis melo var. makuwa]7.0e-9595.56Show/hide
Query:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD
        MLRACALEFPGSW SHLHLMEFAYNNS+QATIGMTPFEALY +CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRS M TAQSRQKSYADVRRKDLEF+
Subjt:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD

Query:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE
        +GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE
Subjt:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE

TrEMBL top hitse value%identityAlignment
A0A5A7SSB3 Pol protein2.9e-9495Show/hide
Query:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD
        MLRACALEFPGSW SHLHLMEFAYNNS+QATIGMTPFEALY KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRS M TAQSR KSYADVRRKDLEF+
Subjt:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD

Query:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE
        VGDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLE
Subjt:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE

A0A5A7TK90 Reverse transcriptase2.2e-9495Show/hide
Query:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD
        MLRACALEFP SW SHLHLMEFAYNNS+QATIGM PFEALY KCCRSPVCWGEVGEQRLMGPEL+QSTNEAIQKIRS MQT QSRQKSYADVRRKDLEFD
Subjt:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD

Query:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE
        VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLE
Subjt:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE

A0A5A7TPA9 Pol protein1.7e-9494.44Show/hide
Query:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD
        MLRACALEFPGSW SHLHLMEFAYNNS+QATIGM PFEALY +CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRS M TAQSRQKSYADVRRKDLEF+
Subjt:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD

Query:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE
        +GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFH+SMLRKYVPDPSHVVDYEPLE
Subjt:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE

A0A5A7UB07 Pol protein1.3e-9495.56Show/hide
Query:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD
        MLRACALEFPGSW SHLHLMEFAYNNS+QATIGM PFEALY KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRS M TAQSRQKSYADVRRKDLEF+
Subjt:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD

Query:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE
        VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLE
Subjt:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE

A0A5A7VDP3 Pol protein3.4e-9595.56Show/hide
Query:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD
        MLRACALEFPGSW SHLHLMEFAYNNS+QATIGMTPFEALY +CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRS M TAQSRQKSYADVRRKDLEF+
Subjt:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFD

Query:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE
        +GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE
Subjt:  VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLE

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein8.8e-1633.14Show/hide
Query:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYS-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDL-E
        +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  Q ++ H+ T   + K Y D++ +++ E
Subjt:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYS-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDL-E

Query:  FDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRKY
        F  GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  FDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRKY

P0CT35 Transposon Tf2-2 polyprotein8.8e-1633.14Show/hide
Query:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYS-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDL-E
        +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  Q ++ H+ T   + K Y D++ +++ E
Subjt:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYS-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDL-E

Query:  FDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRKY
        F  GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  FDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRKY

P0CT36 Transposon Tf2-3 polyprotein8.8e-1633.14Show/hide
Query:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYS-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDL-E
        +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  Q ++ H+ T   + K Y D++ +++ E
Subjt:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYS-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDL-E

Query:  FDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRKY
        F  GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  FDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein8.8e-1633.14Show/hide
Query:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYS-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDL-E
        +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  Q ++ H+ T   + K Y D++ +++ E
Subjt:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYS-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDL-E

Query:  FDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRKY
        F  GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  FDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRKY

Q9UR07 Transposon Tf2-11 polyprotein8.8e-1633.14Show/hide
Query:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYS-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDL-E
        +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  Q ++ H+ T   + K Y D++ +++ E
Subjt:  MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYS-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDL-E

Query:  FDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRKY
        F  GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  FDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRKY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGTTGGCACTCCCACTTGCATTTGATGGAATTTGCTTATAATAACAGTTTTCAGGCTACTATTGGCATGACACCATT
TGAGGCCTTGTACAGCAAATGTTGTAGATCCCCTGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGA
AAATTAGATCACATATGCAGACCGCACAGAGTAGGCAGAAGAGTTATGCTGATGTTAGACGGAAGGATCTTGAGTTTGATGTGGGGGACAAGGTGTTCTTGAAGGTAGCA
CCTATGAAAGGTGTCTTACGATTTGAAAGGAGAGGAAAACTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTTTGGAGCGGATTGGCCCTGTAGCGTATCGCTTGGCGTT
GCCACCATCACTCTCGGCAGTTCATGATGTGTTCCATGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTATGAGCCACTAGAGAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGTTGGCACTCCCACTTGCATTTGATGGAATTTGCTTATAATAACAGTTTTCAGGCTACTATTGGCATGACACCATT
TGAGGCCTTGTACAGCAAATGTTGTAGATCCCCTGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGA
AAATTAGATCACATATGCAGACCGCACAGAGTAGGCAGAAGAGTTATGCTGATGTTAGACGGAAGGATCTTGAGTTTGATGTGGGGGACAAGGTGTTCTTGAAGGTAGCA
CCTATGAAAGGTGTCTTACGATTTGAAAGGAGAGGAAAACTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTTTGGAGCGGATTGGCCCTGTAGCGTATCGCTTGGCGTT
GCCACCATCACTCTCGGCAGTTCATGATGTGTTCCATGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTATGAGCCACTAGAGAGGTGA
Protein sequenceShow/hide protein sequence
MLRACALEFPGSWHSHLHLMEFAYNNSFQATIGMTPFEALYSKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSHMQTAQSRQKSYADVRRKDLEFDVGDKVFLKVA
PMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLER