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Cmc05g0136391 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc05g0136391
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDNA primase
Genome locationCMiso1.1chr05:19455236..19457525
RNA-Seq ExpressionCmc05g0136391
SyntenyCmc05g0136391
Gene Ontology termsGO:0006269 - DNA replication, synthesis of RNA primer (biological process)
GO:0003896 - DNA primase activity (molecular function)
InterPro domainsIPR002755 - DNA primase, small subunit
IPR014052 - DNA primase, small subunit, eukaryotic/archaeal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039338.1 DNA primase, small subunit [Cucumis melo var. makuwa]2.3e-3257.46Show/hide
Query:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE
        P + + PAKRHAYAG+NVFTPVERELVFDIDMT                                               G RGVHCW CDGKA+RLSNE
Subjt:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE

Query:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA
        QRAAIAEYFHLYQGNENS KKISLTGPVLHPFLA
Subjt:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA

XP_008465561.2 PREDICTED: DNA primase small subunit, partial [Cucumis melo]1.4e-4062.33Show/hide
Query:  FFARFICLSHTLPTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCW
        F +RFICLSHTLPTF+LQPAKRHAYAG+NVFTPVERELVFDIDMT                                               G RGVHCW
Subjt:  FFARFICLSHTLPTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCW

Query:  ACDGKAKRLSNEQRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA
         CDGKA+RLSNEQRAAIAEYFHLYQGNENS KKISLTGPVLHPFLA
Subjt:  ACDGKAKRLSNEQRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA

XP_022925368.1 DNA primase small subunit [Cucurbita moschata]1.2e-3156.72Show/hide
Query:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE
        P + + PAKRHAYAG NVFTPVERELVFDIDMT                                               G RGVHCW CDGKA+RLSNE
Subjt:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE

Query:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA
        QRAAIA+YFHLYQGNENS KKISLTGPVLHPFLA
Subjt:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA

XP_022973496.1 DNA primase small subunit [Cucurbita maxima]1.2e-3156.72Show/hide
Query:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE
        P + + PAKRHAYAG NVFTPVERELVFDIDMT                                               G RGVHCW CDGKA+RLSNE
Subjt:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE

Query:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA
        QRAAIA+YFHLYQGNENS KKISLTGPVLHPFLA
Subjt:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA

XP_038889665.1 DNA primase small subunit [Benincasa hispida]2.3e-3257.46Show/hide
Query:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE
        P + + PAKRHAYAG+NVFTPVERELVFDIDMT                                               G RGVHCW CDGKA+RLSNE
Subjt:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE

Query:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA
        QRAAIAEYFHLYQGNENS KKISLTGPVLHPFLA
Subjt:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA

TrEMBL top hitse value%identityAlignment
A0A0A0KUP7 DNA primase2.1e-3156.39Show/hide
Query:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE
        P + + PAKRHAYA +NVFTPVERELVFDIDMT                                               G RGVHCW CDGKA+RLSNE
Subjt:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE

Query:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFL
        QRAAIAEYFHLYQGNENS KKISLTGPVLHPFL
Subjt:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFL

A0A1S3CPJ4 DNA primase small subunit6.6e-4162.33Show/hide
Query:  FFARFICLSHTLPTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCW
        F +RFICLSHTLPTF+LQPAKRHAYAG+NVFTPVERELVFDIDMT                                               G RGVHCW
Subjt:  FFARFICLSHTLPTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCW

Query:  ACDGKAKRLSNEQRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA
         CDGKA+RLSNEQRAAIAEYFHLYQGNENS KKISLTGPVLHPFLA
Subjt:  ACDGKAKRLSNEQRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA

A0A5A7T8Y3 DNA primase1.1e-3257.46Show/hide
Query:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE
        P + + PAKRHAYAG+NVFTPVERELVFDIDMT                                               G RGVHCW CDGKA+RLSNE
Subjt:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE

Query:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA
        QRAAIAEYFHLYQGNENS KKISLTGPVLHPFLA
Subjt:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA

A0A6J1EEZ9 DNA primase5.6e-3256.72Show/hide
Query:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE
        P + + PAKRHAYAG NVFTPVERELVFDIDMT                                               G RGVHCW CDGKA+RLSNE
Subjt:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE

Query:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA
        QRAAIA+YFHLYQGNENS KKISLTGPVLHPFLA
Subjt:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA

A0A6J1I8T4 DNA primase5.6e-3256.72Show/hide
Query:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE
        P + + PAKRHAYAG NVFTPVERELVFDIDMT                                               G RGVHCW CDGKA+RLSNE
Subjt:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE

Query:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA
        QRAAIA+YFHLYQGNENS KKISLTGPVLHPFLA
Subjt:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA

SwissProt top hitse value%identityAlignment
P20664 DNA primase small subunit2.1e-0744.44Show/hide
Query:  TGSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSKKISLTGPVLHPFL
        +G RGVHCW CD   ++LS+  R+ I EY  L +G ++  KK+ L   V HPF+
Subjt:  TGSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSKKISLTGPVLHPFL

P49642 DNA primase small subunit1.6e-0742.59Show/hide
Query:  TGSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSKKISLTGPVLHPFL
        +G RGVHCW CD   ++LS+  R+ I EY  L +G ++  KK+ L+  + HPF+
Subjt:  TGSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSKKISLTGPVLHPFL

Q24317 DNA primase small subunit3.3e-0527.93Show/hide
Query:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE
        P    +P    +  G    TPV+RELVFDIDMT                                               G RG+HCW CD +A+ L   
Subjt:  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE

Query:  QRAAIAEYFHL
         R A+AEY ++
Subjt:  QRAAIAEYFHL

Q25998 DNA primase small subunit7.9e-0724.35Show/hide
Query:  NVFTPVERELVFDIDM-----------------------------------------------TGSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNE
        ++F PV++EL+FDIDM                                               +G RG+HCW  D   +  + + RAA+A+Y ++  G++
Subjt:  NVFTPVERELVFDIDM-----------------------------------------------TGSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNE

Query:  NSSKKISLTGPVLHP
           KK+S+ G   +P
Subjt:  NSSKKISLTGPVLHP

Q7KQM1 DNA primase small subunit7.9e-0724.35Show/hide
Query:  NVFTPVERELVFDIDM-----------------------------------------------TGSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNE
        ++F PV++EL+FDIDM                                               +G RG+HCW  D   +  + + RAA+A+Y ++  G++
Subjt:  NVFTPVERELVFDIDM-----------------------------------------------TGSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNE

Query:  NSSKKISLTGPVLHP
           KK+S+ G   +P
Subjt:  NSSKKISLTGPVLHP

Arabidopsis top hitse value%identityAlignment
AT5G41880.1 DNA primases;DNA primases6.0e-2644.78Show/hide
Query:  FILQPAKRHAYA--GNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE
        + + P KRHAYA  G N+FTPVERELVFDID+T                                               G RGVHCW CD KA+RL+NE
Subjt:  FILQPAKRHAYA--GNNVFTPVERELVFDIDMT-----------------------------------------------GSRGVHCWACDGKAKRLSNE

Query:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA
        QR+A+AEYF +Y+GNEN++KK+ L G  LHPFLA
Subjt:  QRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTTTTGAGTATTATTTGTTTGAAAGAGTTTTATTTTTTTGCGAGATTCATTTGTCTTTCTCACACACTTCCAACTTTTATACTTCAGCCTGCAAAGAGACATGC
ATATGCTGGCAATAACGTATTTACTCCAGTGGAAAGGGAGTTGGTTTTTGATATTGATATGACTGGTAGCCGTGGTGTTCATTGTTGGGCCTGTGATGGAAAAGCTAAAA
GGTTGTCTAATGAACAGCGAGCTGCCATTGCTGAATATTTCCATTTATATCAGGGTAATGAAAATAGTAGCAAGAAAATTTCTCTAACGGGTCCAGTTCTTCATCCATTT
CTCGCGTAG
mRNA sequenceShow/hide mRNA sequence
TCAGTTTAACACTCTCTTTCCAGTTTTCTCATGATTTCTGATGATTTAATTATTAACTTTTGCATAATTTGGTTTCAAGTAATCAGATTTATTTCAGTAACAAACATTTT
GCATGGTTGTTTTGAGTATTATTTGTTTGAAAGAGTTTTATTTTTTTGCGAGATTCATTTGTCTTTCTCACACACTTCCAACTTTTATACTTCAGCCTGCAAAGAGACAT
GCATATGCTGGCAATAACGTATTTACTCCAGTGGAAAGGGAGTTGGTTTTTGATATTGATATGACTGGTAGCCGTGGTGTTCATTGTTGGGCCTGTGATGGAAAAGCTAA
AAGGTTGTCTAATGAACAGCGAGCTGCCATTGCTGAATATTTCCATTTATATCAGGGTAATGAAAATAGTAGCAAGAAAATTTCTCTAACGGGTCCAGTTCTTCATCCAT
TTCTCGCGTAGTTCTTCATCCATTTCTCGGATCGTACACCAAAGTTCTCAAGGATAGCTTTGAATCACAATTGCTTTGTAGTCAAAAAGATTTTTTCAACTGAGGAGAGA
TATGAGAAAATATTAGATATGATTCCTGATGAATCGGCCATTACCTCAGACCTACGGGGAAGGTGGCAAGATAATAGGCGATCCTCTAAAATTGATGTTAACTCATTAAG
ATGGGAGCAACTGAAAAATCTATTGCAATCAGGGAAACATAAGGCTCAAGGAATGCGTAGGCATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTAGGCTTGATTTGG
AGGTATTTGTATTACCTGACTTTCACTCAATATTCTTAACTAGATTTTCTGCTCCATTTATTGTAATTAGATCAATCTGTACTTGCATTTAGCTTTGTTACATTTTGGAT
CTCTAATTTAGCTTTGTTACCCTTGGATGTATCAATAGTTCGATATCATTTGTATTCCAATGGAATTGATCGAAGTTACAAGGTAAGGTTCTGACATGGTGAATATTTAA
ACTCAGAGAATGTTACTAGTAGAATGAAAAATACAGTGGATGAAAAAGATGAACTGAACTGAATGTAAACCTTATATTCTTATCTTGATGTGTAGAGTCGTACTCTAAAA
TTTCATTTTGTTTTCTTACTAGGTTTTGCAAGAATCCATTTGAGCAGTGAAGTCATATTTGCGGCAATTGATTGATATATAGGTCTTTTTTAGGTTTGGTAGAAAATTTT
GGTTCAAATGTACTTATTTAAGTATCTTGGTACCAAAGCATGTATGTTCATTCTATCATACTACAAACCTTTACCAATAATTGTGTACACATACTACAAAGTATATATAT
TAAATCGTTCATGGTTTCTTTCCA
Protein sequenceShow/hide protein sequence
MVVLSIICLKEFYFFARFICLSHTLPTFILQPAKRHAYAGNNVFTPVERELVFDIDMTGSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSKKISLTGPVLHPF
LA