CuGenDBv2

Gene ID	Cmc05g0137111
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr05:20377349..20378251
RNA-Seq Expression	Cmc05g0137111
Synteny	Cmc05g0137111
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026271.1 pol protein [Cucumis melo var. makuwa]

1.2e-163

97.33

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Query:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMDLMNRVFREFL+TFVIVFI+DILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQ+SFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRF+ENFSRIATP+TQLTRKGA FVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR

KAA0046094.1 gag protease polyprotein [Cucumis melo var. makuwa]

1.0e-162

96.67

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Query:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFM+LMNRVFREFL+TFVIVFI+DILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQ+SFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRF+ENFSRIATP+TQLTRKGA FVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

2.6e-163

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Query:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMDLMNRVFREFL+TFVIVFI+DILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQ+SFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRF+ENFSRIATP+TQLTRKGA FVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR

KAA0050009.1 pol protein [Cucumis melo var. makuwa]

7.6e-163

96.67

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Query:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW
        MSF LTNAPAVFMDLMNRVFREFL+TFVIVFI+DILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQ+SFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRF+ENFSRIATP+TQLTRKGA FVWSKACEDSFQNLKQKL+TAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR

KAA0057672.1 pol protein [Cucumis melo var. makuwa]

1.0e-162

96.67

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Query:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMDLMNRVFREFL+TFVIVFI+DILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQ+SFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRF+ENFSR ATP+TQLTRKGA FVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPZ2 Pol protein

5.7e-164

97.33

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMDLMNRVFREFL+TFVIVFI+DILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQ+SFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRF+ENFSRIATP+TQLTRKGA FVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR

A0A5A7TSQ8 Reverse transcriptase

4.8e-163

96.67

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Query:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFM+LMNRVFREFL+TFVIVFI+DILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQ+SFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRF+ENFSRIATP+TQLTRKGA FVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR

A0A5A7U330 Reverse transcriptase

1.3e-163

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Query:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMDLMNRVFREFL+TFVIVFI+DILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQ+SFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRF+ENFSRIATP+TQLTRKGA FVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR

A0A5A7U943 Pol protein

3.7e-163

96.67

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Query:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW
        MSF LTNAPAVFMDLMNRVFREFL+TFVIVFI+DILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQ+SFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRF+ENFSRIATP+TQLTRKGA FVWSKACEDSFQNLKQKL+TAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR

A0A5A7UP94 Pol protein

4.8e-163

96.67

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMDLMNRVFREFL+TFVIVFI+DILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQ+SFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRF+ENFSR ATP+TQLTRKGA FVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

3.1e-58

40.69

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Query:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW
        M FGL NAPA F   MN + R  LN   +V+++DI+++S +  EH + L +V + L    L  +  KCEF  ++ +FLGHV++  G+  +P KIEA+  +
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDS-FQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAY
          P+   E+++FLGL GYYR+F+ NF+ IA P+T+  +K      +    DS F+ LK  +   P+L VPD +  F + +DAS   LG VL Q G  ++Y
Subjt:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDS-FQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAY

Query:  ASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSR
         SR L  HE NY T + EL A+V+A K +RHYL G   +I +DH+ L + +  K+ N +  RW   + ++D +I Y  GK N VADALSR
Subjt:  ASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSR

P0CT41 Transposon Tf2-12 polyprotein

1.2e-46

35.31

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Query:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW
        M +G++ APA F   +N +  E   + V+ +++DILI+SK+E+EH +H++ VLQ L++  L    +KCEF   Q+ F+G+ +S+ G +     I+ V  W
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----
         +P    E+R FLG   Y R+F+   S++  P+  L +K   + W+     + +N+KQ LV+ PVL   D S   ++ +DAS   +G VL Q+       
Subjt:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----

Query:  VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EMIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKV
         V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y  G AN +ADALSR V
Subjt:  VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EMIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKV

Query:  SHS
          +
Subjt:  SHS

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

3.7e-51

36.3

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Query:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW
        + FGL NA ++F   ++ V RE +     V+++D++I+S+ E++H  H+  VL+ L D  +     K  F+ + + +LG +VSK G   DP K++A+  +
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTR-----------KGASFVWSKACEDSFQNLKQKLVTAPV-LTVPDGSGSFVIYSDASKKGLGC
          P  V +VRSFLGLA YYR F+++F+ IA PIT + +           K     +++   ++FQ L+  L +  V L  PD    F + +DAS  G+G 
Subjt:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTR-----------KGASFVWSKACEDSFQNLKQKLVTAPV-LTVPDGSGSFVIYSDASKKGLGC

Query:  VLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEM-IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADAL
        VL Q+G+ +   SR LK  EQNY T++ EL A+V+AL   +++LYG   I IFTDH+ L +    +  N + +RW   +  ++ ++ Y  GK N VADAL
Subjt:  VLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEM-IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADAL

Query:  SRK
        SR+
Subjt:  SRK

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.2e-57

39.66

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Query:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW
        M FGL NAPA F   MN + R  LN   +V+++DI+I+S +  EH   +++V   L D  L  +  KCEF  K+ +FLGH+V+  G+  +P K++A+  +
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSK-ACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAY
          P+   E+R+FLGL GYYR+F+ N++ IA P+T   +K       K    ++F+ LK  ++  P+L +PD    FV+ +DAS   LG VL Q G  +++
Subjt:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSK-ACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAY

Query:  ASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSR
         SR L  HE NY   + EL A+V+A K +RHYL G    I +DH+ L++    KE   +  RW   + +Y  +I Y  GK N VADALSR
Subjt:  ASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

1.7e-51

34.43

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Query:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW
        + FGL NAPA+F  +++ + RE +     V+I+DI+++S+    H ++LR+VL +L    L     K  F   Q+ FLG++V+  G+  DP K+ A++  
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTR-----------KGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCV
          P++V E++ FLG+  YYR+F+++++++A P+T LTR                   +    SF +LK  L ++ +L  P  +  F + +DAS   +G V
Subjt:  TRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTR-----------KGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCV

Query:  LMQ----QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE-MIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVA
        L Q    + + +AY SR L   E+NY T + E+ A++++L   R YLYG   I+++TDH+ L +    +  N + +RW   +++Y+CE++Y  GK+NVVA
Subjt:  LMQ----QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE-MIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVA

Query:  DALSR
        DALSR
Subjt:  DALSR

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

8.5e-27

44.27

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Query:  HLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLG--HVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVW
        HL +VLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+ GW  P   +E+R FLGL GYYRRF++N+ +I  P+T+L +K  S  W
Subjt:  HLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLG--HVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFMENFSRIATPITQLTRKGASFVW

Query:  SKACEDSFQNLKQKLVTAPVLTVPDGSGSFV
        ++    +F+ LK  + T PVL +PD    FV
Subjt:  SKACEDSFQNLKQKLVTAPVLTVPDGSGSFV

Sequences

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CDS sequence

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ATGTCTTTTGGTTTGACGAACGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAAATACTTTTGTGATCGTGTTTATTGAGGATATCTTGAT
ATACTCCAAGACGGAGGCCGAACATGAGGAACATTTACGTATAGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGC
AGATGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTGAGTGAGGTTCGT
AGCTTTCTGGGTTTAGCAGGTTATTATCGACGATTTATGGAGAACTTTTCTCGTATAGCTACTCCTATTACTCAGTTGACCAGGAAGGGAGCTTCTTTTGTTTGGAGCAA
GGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGA
AGGGTTTGGGTTGTGTTTTGATGCAACAAGGTAAGGTGGTCGCTTATGCTTCTCGCCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCA
GTGGTTTTTGCTTTGAAAATATGGAGGCATTACTTATACGGTGAAATGATACAGATCTTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATAT
GAGACAGCGAAGATGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATTCAGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATT
CAGCAGCACTTATTACCCGATAG

mRNA sequence

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Protein sequence

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MSFGLTNAPAVFMDLMNRVFREFLNTFVIVFIEDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR
SFLGLAGYYRRFMENFSRIATPITQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAA
VVFALKIWRHYLYGEMIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITR

Cmc05g0137111 (gene) of Melon (Charmono) v1.1 genome