CuGenDBv2

Gene ID	Cmc05g0137611
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Genome location	CMiso1.1chr05:21200680..21201174
RNA-Seq Expression	Cmc05g0137611
Synteny	Cmc05g0137611
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0033543.1 gag-pol polyprotein [Cucumis melo var. makuwa]

1.2e-69

85.37

Show/hide

Query:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST
        +NDE++ETPNM+E RTTSI+EVSKAD+  DD  KS KKLSEESI KKS+LI SAHVKKNHPASSIIGD SAGMQT+RKEKIDY  MVADLCYTSTIEPST
Subjt:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST

Query:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA
        VDSALK+EYWLNAMQE+LLQFRRNNVWTLVSKP+GVNVI TKWVFKNKTDEA CVTKNKARLVA
Subjt:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA

KAA0040866.1 putative mitochondrial protein [Cucumis melo var. makuwa]

5.8e-72

99.3

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Query:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST
        MNDEEDETPNMYEARTTSIVEVSKADHLSDDT+KSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST
Subjt:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST

Query:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKW
        VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKW
Subjt:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKW

KAA0053468.1 gag-pol polyprotein [Cucumis melo var. makuwa]

1.1e-70

87.8

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Query:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST
        MNDEEDETPN+ EARTTSIVEVSKAD+ SDD  KS +K SEE I KKSELIPSAHVKKNHPASSIIGD SAGMQTKRKEKIDYM MVADLCYTSTIEPST
Subjt:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST

Query:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA
        VDSA KDEYWLNAMQE+LLQFRR+NVWTLVSKP+GV VI TKWVFKNKTDEAG VTKNKARLVA
Subjt:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA

TYK19203.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.9e-70

86.59

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Query:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST
        MNDEEDETPNM EARTTS VEVSKAD+ SDD  KS +K SEE I KKSELIPSAHVKKNHP SSIIGDS AGMQT+RK+ ID+M MVADLCYTSTIEPST
Subjt:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST

Query:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA
        VDSALKDEYWLNAMQEELLQFRRNNVWTLVSK +GVN+I TKWVFKNKTDEAGCVTKNKARLVA
Subjt:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA

TYK19884.1 gag-pol polyprotein [Cucumis melo var. makuwa]

9.2e-70

87.2

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Query:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST
        MNDEEDETPN+ EARTTSIVEVSKAD+ SDD  KS +K SEE I KKSELI SAHVKKNHPASSIIGD SAGMQTKRKEKIDYM MVADLCYTSTIEPST
Subjt:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST

Query:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA
        VDSA KDEYWLNAMQE+LLQFRR+NVWTLVSKP+GV VI TKWVFKNKTDEAG VTKNKARLVA
Subjt:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TFQ9 Putative mitochondrial protein

2.8e-72

99.3

Show/hide

Query:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST
        MNDEEDETPNMYEARTTSIVEVSKADHLSDDT+KSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST
Subjt:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST

Query:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKW
        VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKW
Subjt:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKW

A0A5A7UEJ0 Gag-pol polyprotein

5.3e-71

87.8

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Query:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST
        MNDEEDETPN+ EARTTSIVEVSKAD+ SDD  KS +K SEE I KKSELIPSAHVKKNHPASSIIGD SAGMQTKRKEKIDYM MVADLCYTSTIEPST
Subjt:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST

Query:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA
        VDSA KDEYWLNAMQE+LLQFRR+NVWTLVSKP+GV VI TKWVFKNKTDEAG VTKNKARLVA
Subjt:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA

A0A5D3B9N4 Gag-pol polyprotein

5.8e-70

85.37

Show/hide

Query:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST
        +NDE++ETPNM+E RTTSI+EVSKAD+  DD  KS KKLSEESI KKS+LI SAHVKKNHPASSIIGD SAGMQT+RKEKIDY  MVADLCYTSTIEPST
Subjt:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST

Query:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA
        VDSALK+EYWLNAMQE+LLQFRRNNVWTLVSKP+GVNVI TKWVFKNKTDEA CVTKNKARLVA
Subjt:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA

A0A5D3D6S4 Putative mitochondrial protein

9.0e-71

86.59

Show/hide

Query:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST
        MNDEEDETPNM EARTTS VEVSKAD+ SDD  KS +K SEE I KKSELIPSAHVKKNHP SSIIGDS AGMQT+RK+ ID+M MVADLCYTSTIEPST
Subjt:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST

Query:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA
        VDSALKDEYWLNAMQEELLQFRRNNVWTLVSK +GVN+I TKWVFKNKTDEAGCVTKNKARLVA
Subjt:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA

A0A5D3D8L4 Gag-pol polyprotein

4.5e-70

87.2

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Query:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST
        MNDEEDETPN+ EARTTSIVEVSKAD+ SDD  KS +K SEE I KKSELI SAHVKKNHPASSIIGD SAGMQTKRKEKIDYM MVADLCYTSTIEPST
Subjt:  MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPST

Query:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA
        VDSA KDEYWLNAMQE+LLQFRR+NVWTLVSKP+GV VI TKWVFKNKTDEAG VTKNKARLVA
Subjt:  VDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

3.7e-05

Show/hide

Query:  WLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA
        W  A+  EL   + NN WT+  +P+  N++ ++WVF  K +E G   + KARLVA
Subjt:  WLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA

P92520 Uncharacterized mitochondrial protein AtMg00820

3.1e-12

45.74

Show/hide

Query:  MQTKRKEKIDYMNMVADLCYTSTI--EPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA
        M T+ K  I+ +N    L  T+TI  EP +V  ALKD  W  AMQEEL    RN  W LV  P   N++  KWVFK K    G + + KARLVA
Subjt:  MQTKRKEKIDYMNMVADLCYTSTI--EPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA

Arabidopsis top hits

e value

%identity

Alignment

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)

2.2e-13

45.74

Show/hide

Query:  MQTKRKEKIDYMNMVADLCYTSTI--EPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA
        M T+ K  I+ +N    L  T+TI  EP +V  ALKD  W  AMQEEL    RN  W LV  P   N++  KWVFK K    G + + KARLVA
Subjt:  MQTKRKEKIDYMNMVADLCYTSTI--EPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA

Sequences

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CDS sequence

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ATGAATGATGAGGAAGATGAGACTCCAAACATGTATGAAGCTAGAACTACGAGCATTGTAGAAGTTTCTAAAGCTGATCACCTGTCTGATGATACAGTCAAAAGTTTTAA
AAAATTATCAGAAGAAAGTATCATTAAGAAATCAGAACTAATTCCATCTGCTCATGTGAAGAAAAATCATCCAGCAAGCTCTATTATAGGTGATTCATCAGCTGGGATGC
AGACCAAAAGGAAAGAAAAGATCGATTACATGAACATGGTTGCTGATTTGTGTTATACTTCCACCATTGAACCTTCTACTGTTGACTCTGCTCTCAAGGATGAGTATTGG
TTAAATGCTATGCAAGAGGAGCTACTCCAATTTAGGCGAAACAATGTCTGGACGTTAGTTTCAAAGCCAAAAGGTGTAAACGTTATTGTCACTAAATGGGTATTTAAAAA
TAAGACTGATGAAGCTGGATGTGTAACAAAAAATAAAGCCAGATTAGTAGCTTAA

mRNA sequence

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Protein sequence

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MNDEEDETPNMYEARTTSIVEVSKADHLSDDTVKSFKKLSEESIIKKSELIPSAHVKKNHPASSIIGDSSAGMQTKRKEKIDYMNMVADLCYTSTIEPSTVDSALKDEYW
LNAMQEELLQFRRNNVWTLVSKPKGVNVIVTKWVFKNKTDEAGCVTKNKARLVA

Cmc05g0137611 (gene) of Melon (Charmono) v1.1 genome