CuGenDBv2

Gene ID	Cmc05g0139201
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr05:23760607..23761104
RNA-Seq Expression	Cmc05g0139201
Synteny	Cmc05g0139201
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0042393 - histone binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

2.1e-77

95.15

Show/hide

Query:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNG GDFALWRKKI AILVQHKVAKILDE RL +NITESEKRDMDEMAY TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
         IKEKFFGYKMDQSK LEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

2.1e-77

95.15

Show/hide

Query:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNG GDF+LWRKKI AILVQHKVAKILDE RL +NITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSL NKI
Subjt:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
         IKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG

KAA0066028.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

6.6e-76

93.94

Show/hide

Query:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNG+GDFA+WRKKI AILVQHKVAKILDEGRL ENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGEL KKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
         IKEKFFGYKM QSKSLEENLDEFQKIVVDLNNIGEKMS+ENQAVILLN LPE YREVKAAIKYG
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG

TYK05815.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

6.6e-76

93.94

Show/hide

Query:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNG+GDFA+WRKKI AILVQHKVAKILDEGRL ENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGEL KKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
         IKEKFFGYKM QSKSLEENLDEFQKIVVDLNNIGEKMS+ENQAVILLN LPE YREVKAAIKYG
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

6.4e-79

96.36

Show/hide

Query:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNG GDFALWRKKI AILVQHKVAKILDE RL +NITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
         IKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

1.0e-77

95.15

Show/hide

Query:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNG GDFALWRKKI AILVQHKVAKILDE RL +NITESEKRDMDEMAY TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
         IKEKFFGYKMDQSK LEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG

A0A5A7UB25 Putative gag-pol polyprotein

1.0e-77

95.15

Show/hide

Query:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNG GDF+LWRKKI AILVQHKVAKILDE RL +NITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSL NKI
Subjt:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
         IKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG

A0A5A7VE98 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.2e-76

93.94

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Query:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNG+GDFA+WRKKI AILVQHKVAKILDEGRL ENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGEL KKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
         IKEKFFGYKM QSKSLEENLDEFQKIVVDLNNIGEKMS+ENQAVILLN LPE YREVKAAIKYG
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG

A0A5D3C356 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.2e-76

93.94

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Query:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNG+GDFA+WRKKI AILVQHKVAKILDEGRL ENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGEL KKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
         IKEKFFGYKM QSKSLEENLDEFQKIVVDLNNIGEKMS+ENQAVILLN LPE YREVKAAIKYG
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG

A0A5D3DNU1 Putative gag-pol polyprotein

3.1e-79

96.36

Show/hide

Query:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNG GDFALWRKKI AILVQHKVAKILDE RL +NITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
         IKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.3e-10

25.77

Show/hide

Query:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        M   +  +  F+G   +A+W+ +I A+L +  V K++D   L+ N  +   +  +  A STI+ YLSD  L       T  ++ + L+++Y  KSL +++
Subjt:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIK
        +++++    K+    SL  +   F +++ +L   G K+ + ++   LL +LP  Y  +  AI+
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.5e-25

34.73

Show/hide

Query:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILD-EGRLLENITESEKRDMDEMAYSTILLYLSDEVL-RLVDEATTTGELWKKLESLYLTKSLPN
        M+  ++EV+KFNG   F+ W++++  +L+Q  + K+LD + +  + +   +  D+DE A S I L+LSD+V+  ++DE T  G +W +LESLY++K+L N
Subjt:  MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILD-EGRLLENITESEKRDMDEMAYSTILLYLSDEVL-RLVDEATTTGELWKKLESLYLTKSLPN

Query:  KISIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG
        K+ +K++ +   M +  +   +L+ F  ++  L N+G K+ +E++A++LLNSLP +Y  +   I +G
Subjt:  KISIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCTTCGACACGATTTGAAGTGTCTAAGTTTAATGGGAGTGGAGATTTCGCCCTTTGGAGAAAAAAGATTATAGCTATTTTGGTTCAACATAAAGTAGCAAAGATCTT
AGATGAAGGGAGACTTCTAGAAAATATTACAGAAAGTGAAAAAAGAGATATGGATGAAATGGCCTATTCAACTATTCTTCTGTATCTGTCAGATGAAGTTCTTAGGCTAG
TGGATGAGGCTACTACTACAGGGGAGTTGTGGAAAAAGCTAGAGAGCCTCTACTTGACAAAGTCATTGCCAAATAAGATATCTATAAAAGAGAAGTTCTTTGGATATAAG
ATGGACCAAAGTAAAAGTTTAGAAGAGAATCTGGATGAATTTCAGAAGATTGTGGTTGATCTCAATAACATTGGTGAGAAGATGTCGGATGAGAATCAAGCAGTGATTCT
TTTAAATTCATTACCAGAAACATATCGGGAGGTTAAGGCTGCTATTAAATATGGTTGA

mRNA sequence

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Protein sequence

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MASTRFEVSKFNGSGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKISIKEKFFGYK
MDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG

Cmc05g0139201 (gene) of Melon (Charmono) v1.1 genome