CuGenDBv2

Gene ID	Cmc05g0140121
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr05:24630987..24632067
RNA-Seq Expression	Cmc05g0140121
Synteny	Cmc05g0140121
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYJ96309.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.2e-172

89.36

Show/hide

Query:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR
        RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWND+ EDYKFLFFPDERDEP DIASPPTSPITPQQSTSSSSASSSEG RGMR
Subjt:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR

Query:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
        SL+DIYDETEEL     NL +    A  + + F        WKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
Subjt:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS

Query:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
        QRKGIDYDEVF   ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGY VKGQ+DKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
Subjt:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL

Query:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM
        RCPYEHSLYIKVNGHGDILVVCLYVDDLIFT NCASMFEDLKKAMTQEFE  DIGLM
Subjt:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM

TYK06895.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.5e-172

89.08

Show/hide

Query:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR
        RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWND+ EDYKFLFFPDERDEP DIASPPTSPITPQQSTSSSSASSSEG RGMR
Subjt:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR

Query:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
        SL+DIYDETEEL     NL +       + + F        WKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
Subjt:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS

Query:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
        QRKGIDYDEVF   ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGY VKGQ+DKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
Subjt:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL

Query:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM
        RCPYEHSLYIKVNGHGDILVVCLYVDDLIFT NCASMFEDLKKAMTQEFE  DIGLM
Subjt:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM

TYK08113.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.2e-172

89.36

Show/hide

Query:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR
        RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWND+ EDYKFLFFPDERDEP DIASPPTSPITPQQSTSSSSASSSEG RGMR
Subjt:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR

Query:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
        SL+DIYDETEEL     NL +    A  + + F        WKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
Subjt:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS

Query:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
        QRKGIDYDEVF   ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGY VKGQ+DKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
Subjt:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL

Query:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM
        RCPYEHSLYIKVNGHGDILVVCLYVDDLIFT NCASMFEDLKKAMTQEFE  DIGLM
Subjt:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM

TYK13925.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.2e-172

89.36

Show/hide

Query:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR
        RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWND+ EDYKFLFFPDERDEP DIASPPTSPITPQQSTSSSSASSSEG RGMR
Subjt:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR

Query:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
        SL+DIYDETEEL     NL +    A  + + F        WKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
Subjt:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS

Query:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
        QRKGIDYDEVF   ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGY VKGQ+DKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
Subjt:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL

Query:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM
        RCPYEHSLYIKVNGHGDILVVCLYVDDLIFT NCASMFEDLKKAMTQEFE  DIGLM
Subjt:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM

TYK18362.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.2e-172

89.36

Show/hide

Query:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR
        RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWND+ EDYKFLFFPDERDEP DIASPPTSPITPQQSTSSSSASSSEG RGMR
Subjt:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR

Query:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
        SL+DIYDETEEL     NL +    A  + + F        WKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
Subjt:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS

Query:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
        QRKGIDYDEVF   ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGY VKGQ+DKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
Subjt:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL

Query:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM
        RCPYEHSLYIKVNGHGDILVVCLYVDDLIFT NCASMFEDLKKAMTQEFE  DIGLM
Subjt:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM

TrEMBL top hits

e value

%identity

Alignment

A0A5D3BBC7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.9e-173

89.36

Show/hide

Query:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR
        RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWND+ EDYKFLFFPDERDEP DIASPPTSPITPQQSTSSSSASSSEG RGMR
Subjt:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR

Query:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
        SL+DIYDETEEL     NL +    A  + + F        WKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
Subjt:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS

Query:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
        QRKGIDYDEVF   ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGY VKGQ+DKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
Subjt:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL

Query:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM
        RCPYEHSLYIKVNGHGDILVVCLYVDDLIFT NCASMFEDLKKAMTQEFE  DIGLM
Subjt:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM

A0A5D3C896 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.9e-173

89.36

Show/hide

Query:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR
        RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWND+ EDYKFLFFPDERDEP DIASPPTSPITPQQSTSSSSASSSEG RGMR
Subjt:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR

Query:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
        SL+DIYDETEEL     NL +    A  + + F        WKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
Subjt:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS

Query:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
        QRKGIDYDEVF   ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGY VKGQ+DKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
Subjt:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL

Query:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM
        RCPYEHSLYIKVNGHGDILVVCLYVDDLIFT NCASMFEDLKKAMTQEFE  DIGLM
Subjt:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM

A0A5D3CQU3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.9e-173

89.36

Show/hide

Query:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR
        RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWND+ EDYKFLFFPDERDEP DIASPPTSPITPQQSTSSSSASSSEG RGMR
Subjt:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR

Query:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
        SL+DIYDETEEL     NL +    A  + + F        WKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
Subjt:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS

Query:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
        QRKGIDYDEVF   ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGY VKGQ+DKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
Subjt:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL

Query:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM
        RCPYEHSLYIKVNGHGDILVVCLYVDDLIFT NCASMFEDLKKAMTQEFE  DIGLM
Subjt:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM

A0A5D3CTU3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.7e-172

89.08

Show/hide

Query:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR
        RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWND+ EDYKFLFFPDERDEP DIASPPTSPITPQQSTSSSSASSSEG RGMR
Subjt:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR

Query:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
        SL+DIYDETEEL     NL +       + + F        WKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
Subjt:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS

Query:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
        QRKGIDYDEVF   ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGY VKGQ+DKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
Subjt:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL

Query:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM
        RCPYEHSLYIKVNGHGDILVVCLYVDDLIFT NCASMFEDLKKAMTQEFE  DIGLM
Subjt:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM

A0A5D3D497 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.9e-173

89.36

Show/hide

Query:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR
        RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWND+ EDYKFLFFPDERDEP DIASPPTSPITPQQSTSSSSASSSEG RGMR
Subjt:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMR

Query:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
        SL+DIYDETEEL     NL +    A  + + F        WKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS
Subjt:  SLRDIYDETEELM----NLLILKKLAMDDFMTF-------LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYS

Query:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
        QRKGIDYDEVF   ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGY VKGQ+DKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL
Subjt:  QRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYL

Query:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM
        RCPYEHSLYIKVNGHGDILVVCLYVDDLIFT NCASMFEDLKKAMTQEFE  DIGLM
Subjt:  RCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIGLM

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

4.2e-35

27.89

Show/hide

Query:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDE-------------------EASWNWN-----------------DKLEDYKFL-----
        + K DDKS K +FVGY+ +  G+KL++ V +K IV+RDVV DE                   + S N N                  + ++ +FL     
Subjt:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDE-------------------EASWNWN-----------------DKLEDYKFL-----

Query:  ----------------FFPDERDEPCDIASPPTSPITPQ----------------QSTSSSSASSSEGSRGMRSLRDI----------------------
                         FP+E  E  +I     S  + +                +S  S + + S  S     L++I                      
Subjt:  ----------------FFPDERDEPCDIASPPTSPITPQ----------------QSTSSSSASSSEGSRGMRSLRDI----------------------

Query:  ------YDETEELMNLLILKKLAM--------------DDFMTFLWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVA
              Y+E +  +N ++L    +              DD  +  W+ A++ E+ A K N+TW ++  P  K  V  +WVF +K NE G   RYKARLVA
Subjt:  ------YDETEELMNLLILKKLAM--------------DDFMTFLWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVA

Query:  KGYSQRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLD
        +G++Q+  IDY+E F   AR+ + R +++L  Q N K+ QMDVK+AFLNG L+EE+Y+  P G  +    D V KL KA+YGLKQA R W     +   +
Subjt:  KGYSQRKGIDYDEVF---ARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLD

Query:  NGYLRCPYEHSLYIKVNGH-GDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDI
          ++    +  +YI   G+  + + V LYVDD++      +   + K+ + ++F   D+
Subjt:  NGYLRCPYEHSLYIKVNGH-GDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.1e-50

34.92

Show/hide

Query:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYK------FLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSE
        R+KLDDKS   +F+GY     GY+L++PV KK I SRDVVF E       D  E  K      F+  P   + P   A   T  ++ Q           E
Subjt:  RSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYK------FLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSE

Query:  --------------GSRGMRSLRDI---------YDETEELM-----NLLILKKLAMDDFMTFLWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVF
                      G    + LR           Y  TE ++         LK++        L K AM EE+++++KN T++L  LP GK+ +  KWVF
Subjt:  --------------GSRGMRSLRDI---------YDETEELM-----NLLILKKLAMDDFMTFLWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVF

Query:  KIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFA---RLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALY
        K+K++   ++ RYKARLV KG+ Q+KGID+DE+F+   ++ +IR +++LAA  + ++ Q+DVK+AFL+G LEEE+Y+EQP G+ V G+   V KL K+LY
Subjt:  KIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFA---RLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALY

Query:  GLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIG
        GLKQAPR W  + + +     YL+   +  +Y K     + +++ LYVDD++       +   LK  +++ F+  D+G
Subjt:  GLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEFEKIDIG

P25600 Putative transposon Ty5-1 protein YCL074W

4.0e-17

36.97

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Query:  MDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCAS
        MDV +AFLN  ++E +Y++QPPG+  +   D V +L   +YGLKQAP +WN  IN      G+ R   EH LY +    G I  + +YVDDL+       
Subjt:  MDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCAS

Query:  MFEDLKKAMTQEFEKIDIG
        +++ +K+ +T+ +   D+G
Subjt:  MFEDLKKAMTQEFEKIDIG

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

2.2e-39

40.85

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Query:  WKIAMDEEIKAIKKNDTWEL-STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFA---RLETIRLLIALAAQNNWKIFQMDVK
        W+ AM  EI A   N TW+L    P+    VG +W+F  K N  G + RYKARLVAKGY+QR G+DY E F+   +  +IR+++ +A   +W I Q+DV 
Subjt:  WKIAMDEEIKAIKKNDTWEL-STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFA---RLETIRLLIALAAQNNWKIFQMDVK

Query:  SAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFED
        +AFL G L ++VY+ QPPG+  K + + V KL+KALYGLKQAPR W   +  Y L  G++    + SL++   G   I+ + +YVDD++ T N  ++  +
Subjt:  SAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFED

Query:  LKKAMTQEFEKID
            ++Q F   D
Subjt:  LKKAMTQEFEKID

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

2.7e-37

35.14

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Query:  ASPPTSPITP--------QQSTSSSSASSSEGSRGMRSLRDIYDETEELMNLLILKKLAMDDFMTFLWKIAMDEEIKAIKKNDTWEL-STLPNGKKAVGV
        ++PP  P+ P         Q+  ++ + ++    G+R     Y     L       + A+       W+ AM  EI A   N TW+L    P     VG 
Subjt:  ASPPTSPITP--------QQSTSSSSASSSEGSRGMRSLRDIYDETEELMNLLILKKLAMDDFMTFLWKIAMDEEIKAIKKNDTWEL-STLPNGKKAVGV

Query:  KWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFA---RLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLK
        +W+F  K N  G + RYKARLVAKGY+QR G+DY E F+   +  +IR+++ +A   +W I Q+DV +AFL G L +EVY+ QPPG+  K + D V +L+
Subjt:  KWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFA---RLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLK

Query:  KALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEF
        KA+YGLKQAPR W   +  Y L  G++    + SL++   G   I+ + +YVDD++ T N   + +    A++Q F
Subjt:  KALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCASMFEDLKKAMTQEF

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

4.6e-45

41.55

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Query:  LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFA---RLETIRLLIALAAQNNWKIFQMDVK
        +W  AMD+EI A++   TWE+ TLP  KK +G KWV+KIK N  G +ERYKARLVAKGY+Q++GID+ E F+   +L +++L++A++A  N+ + Q+D+ 
Subjt:  LWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFA---RLETIRLLIALAAQNNWKIFQMDVK

Query:  SAFLNGYLEEEVYLEQPPGYFVKGQD----DKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCAS
        +AFLNG L+EE+Y++ PPGY  +  D    + V  LKK++YGLKQA R W  + +   +  G+++   +H+ ++K+      L V +YVDD+I   N  +
Subjt:  SAFLNGYLEEEVYLEQPPGYFVKGQD----DKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTINCAS

Query:  MFEDLKKAMTQEFEKIDIG
          ++LK  +   F+  D+G
Subjt:  MFEDLKKAMTQEFEKIDIG

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)

8.0e-13

43.18

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Query:  WKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFA---RLETIRLLIALAAQ
        W  AM EE+ A+ +N TW L   P  +  +G KWVFK K +  G ++R KARLVAKG+ Q +GI + E ++   R  TIR ++ +A Q
Subjt:  WKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFA---RLETIRLLIALAAQ

Sequences

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CDS sequence

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ATGCGCAGTAAGCTTGATGATAAAAGTGAGAAATATGTGTTTGTTGGCTATGATGCAAGCTCAAAAGGCTACAAGCTTTATAATCCTGTTACAAAGAAGACGATC
GTAAGCAGAGATGTTGTGTTTGATGAAGAAGCATCATGGAATTGGAATGACAAACTAGAAGATTACAAATTTTTGTTTTTTCCCGACGAACGTGATGAGCCTTGT
GACATTGCTTCTCCACCAACATCACCAATCACTCCACAACAAAGCACATCTTCATCATCTGCAAGTTCAAGTGAAGGGTCTCGTGGCATGAGAAGCTTACGAGAC
ATATATGATGAAACTGAAGAGTTAATGAACCTTTTAATTTTGAAGAAGCTTGCTATGGATGATTTTATGACTTTTTTATGGAAGATTGCTATGGATGAAGAGATA
AAAGCCATAAAAAAGAATGATACGTGGGAACTTTCTACTCTTCCAAATGGAAAGAAAGCAGTAGGTGTCAAATGGGTGTTCAAGATAAAAAGAAATGAAAAGGGA
GAAGTGGAGAGATACAAAGCAAGATTAGTTGCAAAAGGATATTCTCAAAGAAAAGGCATTGATTATGATGAAGTATTTGCTCGTTTGGAAACTATAAGGTTGTTA
ATTGCTCTTGCTGCACAAAATAATTGGAAGATCTTTCAGATGGATGTCAAATCAGCATTTTTGAATGGATATCTAGAAGAAGAAGTCTACTTGGAACAACCTCCT
GGTTATTTTGTGAAAGGCCAAGATGATAAAGTTCTAAAATTGAAGAAGGCATTATACGGATTGAAACAAGCACCAAGAATGTGGAATAGCAGAATCAACAAATAT
TTCCTTGATAATGGGTATTTGAGGTGTCCTTATGAACATTCTCTTTATATTAAGGTTAATGGTCATGGAGATATTTTGGTAGTTTGTTTGTACGTGGATGACTTA
ATTTTTACAATAAATTGTGCAAGTATGTTTGAAGATCTCAAGAAGGCGATGACCCAAGAATTTGAAAAGATAGATATAGGGCTAATGTAA

mRNA sequence

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Protein sequence

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MRSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFLFFPDERDEPCDIASPPTSPITPQQSTSSSSASSSEGSRGMRSLRD
IYDETEELMNLLILKKLAMDDFMTFLWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFARLETIRLL
IALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYFVKGQDDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDL
IFTINCASMFEDLKKAMTQEFEKIDIGLM

Cmc05g0140121 (gene) of Melon (Charmono) v1.1 genome