| GenBank top hits | e value | %identity | Alignment |
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| AAK70407.1 pol polyprotein [Citrus x paradisi] | 8.1e-72 | 61.47 | Show/hide |
Query: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMG-NSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKV
MGH++ DCR PK KK+ A V+ ++ V+DI+L AV+LE NM+G N +EWW+DTGATRH+C++K LFTS+ + SN E+LFMGNS+TS++EGQGKV
Subjt: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMG-NSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKV
Query: ILKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESF-VWHDRLEH
LKMTS KELTLNNVL+V +IRKNL+SGSLL+K+GF++VF SD VLSKN MY+GKGY++DGLFKLNV+T+ P INNK ++ AY++ES +WH RL H
Subjt: ILKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESF-VWHDRLEH
Query: VNFNSLHRLINMNLIPKFTFDTSHRCEVCVE
VNFNSL +LINM IP F D H+C+ CVE
Subjt: VNFNSLHRLINMNLIPKFTFDTSHRCEVCVE
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| KAA0042920.1 pol polyprotein [Cucumis melo var. makuwa] | 2.3e-74 | 82.39 | Show/hide |
Query: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVI
MGHQSKD KPKN +KKH QAHI EVDEVSDGV DIDLCAVI ECNM+GNSKEWWVDTGATRHICANKN+FTSYVS+SNGEQLFMGNS TSKV+ QGKVI
Subjt: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVI
Query: LKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSD--GLFKLNVLTVVPKS
LKMTSRKELTLNNVLHV DIRKNL+SGSLLSKNGFKLVFVSDKFV SKNEMYIG+GYLSD G+ + P+S
Subjt: LKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSD--GLFKLNVLTVVPKS
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| KAA0060612.1 pol polyprotein [Cucumis melo var. makuwa] | 1.2e-72 | 89.24 | Show/hide |
Query: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVI
MGHQSKDCRKPKN +KKHAQAHI EVDEVSDGVADIDL AVIL+CNM+GN KEWWVDT ATRHICANKN+F SYVSISNGEQLFMG+S TSKV+GQGKVI
Subjt: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVI
Query: LKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYL
LKMTS KELTLNNVLHV DIRKNL+SGSLLSKNGFKLVFVSDKFVLS+NEMYIGKGYL
Subjt: LKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYL
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| RVW26252.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 2.7e-83 | 66.81 | Show/hide |
Query: GHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVIL
GH+S DCRKPK K+K QA++ E D++S+ V +++L AV+ ECN++GN+KEWWVDTGAT HIC+NK +F++Y + E+LFMGNSS+SKVEG+GKVIL
Subjt: GHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVIL
Query: KMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESF-VWHDRLEHVN
KMTS KELTLN+VLHV DI KNL+SGSLLSKNGFKLVFVSDKFVL+KNEM++GKGYLSDGLFK+NV+TVVPKSI NNK+ + AY++ES +WH RL HVN
Subjt: KMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESF-VWHDRLEHVN
Query: FNSLHRLINMNLIPKFTFDTSHRCEVCVE
+++L RLI+++ +PKF DT+H+CE CVE
Subjt: FNSLHRLINMNLIPKFTFDTSHRCEVCVE
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| TYK01391.1 pol polyprotein [Cucumis melo var. makuwa] | 1.1e-76 | 91.25 | Show/hide |
Query: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVI
MGHQSKDCRKPKN +KKHAQAHI EVDEVSDGVADID+CAV+LECNMMGNSKEWWVDTGAT HICANKNLFTSYVS++NGEQLFMGNSS SKVEGQGKVI
Subjt: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVI
Query: LKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSD
LKMTS ELTLNNVLHV DIRKNLI GSLLSKNGF+LVFVSDKFVLSKNEMYIGKGYLSD
Subjt: LKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSD
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A438CSS8 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.3e-83 | 66.81 | Show/hide |
Query: GHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVIL
GH+S DCRKPK K+K QA++ E D++S+ V +++L AV+ ECN++GN+KEWWVDTGAT HIC+NK +F++Y + E+LFMGNSS+SKVEG+GKVIL
Subjt: GHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVIL
Query: KMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESF-VWHDRLEHVN
KMTS KELTLN+VLHV DI KNL+SGSLLSKNGFKLVFVSDKFVL+KNEM++GKGYLSDGLFK+NV+TVVPKSI NNK+ + AY++ES +WH RL HVN
Subjt: KMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESF-VWHDRLEHVN
Query: FNSLHRLINMNLIPKFTFDTSHRCEVCVE
+++L RLI+++ +PKF DT+H+CE CVE
Subjt: FNSLHRLINMNLIPKFTFDTSHRCEVCVE
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| A0A5A7THY2 Pol polyprotein | 1.1e-74 | 82.39 | Show/hide |
Query: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVI
MGHQSKD KPKN +KKH QAHI EVDEVSDGV DIDLCAVI ECNM+GNSKEWWVDTGATRHICANKN+FTSYVS+SNGEQLFMGNS TSKV+ QGKVI
Subjt: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVI
Query: LKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSD--GLFKLNVLTVVPKS
LKMTSRKELTLNNVLHV DIRKNL+SGSLLSKNGFKLVFVSDKFV SKNEMYIG+GYLSD G+ + P+S
Subjt: LKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSD--GLFKLNVLTVVPKS
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| A0A5D3BNM4 Pol polyprotein | 5.3e-77 | 91.25 | Show/hide |
Query: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVI
MGHQSKDCRKPKN +KKHAQAHI EVDEVSDGVADID+CAV+LECNMMGNSKEWWVDTGAT HICANKNLFTSYVS++NGEQLFMGNSS SKVEGQGKVI
Subjt: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVI
Query: LKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSD
LKMTS ELTLNNVLHV DIRKNLI GSLLSKNGF+LVFVSDKFVLSKNEMYIGKGYLSD
Subjt: LKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSD
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| A0A5D3BT19 Pol polyprotein | 6.0e-73 | 89.24 | Show/hide |
Query: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVI
MGHQSKDCRKPKN +KKHAQAHI EVDEVSDGVADIDL AVIL+CNM+GN KEWWVDT ATRHICANKN+F SYVSISNGEQLFMG+S TSKV+GQGKVI
Subjt: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVI
Query: LKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYL
LKMTS KELTLNNVLHV DIRKNL+SGSLLSKNGFKLVFVSDKFVLS+NEMYIGKGYL
Subjt: LKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYL
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| Q94FM0 Pol polyprotein | 3.9e-72 | 61.47 | Show/hide |
Query: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMG-NSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKV
MGH++ DCR PK KK+ A V+ ++ V+DI+L AV+LE NM+G N +EWW+DTGATRH+C++K LFTS+ + SN E+LFMGNS+TS++EGQGKV
Subjt: MGHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMG-NSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKV
Query: ILKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESF-VWHDRLEH
LKMTS KELTLNNVL+V +IRKNL+SGSLL+K+GF++VF SD VLSKN MY+GKGY++DGLFKLNV+T+ P INNK ++ AY++ES +WH RL H
Subjt: ILKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESF-VWHDRLEH
Query: VNFNSLHRLINMNLIPKFTFDTSHRCEVCVE
VNFNSL +LINM IP F D H+C+ CVE
Subjt: VNFNSLHRLINMNLIPKFTFDTSHRCEVCVE
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 2.0e-04 | 21.03 | Show/hide |
Query: GHQSKDCRKPKNL-----KKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQ
GH KDC K + K+ Q ++ V +++ +V+ C + +D+GA+ H+ +++L+T V + ++ + +
Subjt: GHQSKDCRKPKNL-----KKKHAQAHIIEVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQ
Query: GKVILKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESFVWHDRL
+ I+++ + E+TL +VL + NL+S L + G + F +SKN + + K S L + V+ SI + F +WH+R
Subjt: GKVILKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESFVWHDRL
Query: EHVNFNSLHRLINMNLIPKFTF--DTSHRCEVC
H++ L + N+ + + CE+C
Subjt: EHVNFNSLHRLINMNLIPKFTF--DTSHRCEVC
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.1e-18 | 29.74 | Show/hide |
Query: GHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVIL----EC-NMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQ
GH +DC P+ K K + D + V + D + + EC ++ G EW VDT A+ H ++LF YV+ G + MGN+S SK+ G
Subjt: GHQSKDCRKPKNLKKKHAQAHIIEVDEVSDGVADIDLCAVIL----EC-NMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQ
Query: GKVILKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESFVWHDRL
G + +K L L +V HV D+R NLISG L ++G++ F + K+ L+K + I KG L++ N I +++ + +WH R+
Subjt: GKVILKMTSRKELTLNNVLHVSDIRKNLISGSLLSKNGFKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESFVWHDRL
Query: EHVNFNSLHRLINMNLIPKFTFDTSHRCEVCV
H++ L L +LI T C+ C+
Subjt: EHVNFNSLHRLINMNLIPKFTFDTSHRCEVCV
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 4.2e-07 | 27.61 | Show/hide |
Query: NSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVILKMTSRKELTLNNVLHVSDIRKNLIS-GSLLSKNGFKLVFVSDKFVLS-
+S W +D+GAT HI ++ N + + + G+ + + + ST + G L SR L L+N+L+V +I KNLIS L + NG + F F +
Subjt: NSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVILKMTSRKELTLNNVLHVSDIRKNLIS-GSLLSKNGFKLVFVSDKFVLS-
Query: -KNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESFVWHDRLEHVNFNSLHRLIN
+ + +G D L++ + + P S+ + S + WH RL H + L+ +I+
Subjt: -KNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESFVWHDRLEHVNFNSLHRLIN
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 6.5e-08 | 26.6 | Show/hide |
Query: LECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVILKMTSRKELTLNNVLHVSDIRKNLIS-GSLLSKNGFKLVFVS
L N N+ W +D+GAT HI ++ N + + + G+ + + + ST + G L TS + L LN VL+V +I KNLIS L + N + F
Subjt: LECNMMGNSKEWWVDTGATRHICANKNLFTSYVSISNGEQLFMGNSSTSKVEGQGKVILKMTSRKELTLNNVLHVSDIRKNLIS-GSLLSKNGFKLVFVS
Query: DKFVLS--KNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESFVWHDRLEHVNFNSLHRLINMNLIPKFTFDTSHRCEVC
F + + + +G D L++ + + S+ + S + WH RL H + L+ +I+ + +P + SH+ C
Subjt: DKFVLS--KNEMYIGKGYLSDGLFKLNVLTVVPKSIINNKVSTFAYIVESFVWHDRLEHVNFNSLHRLINMNLIPKFTFDTSHRCEVC
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