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Cmc05g0141961 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc05g0141961
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPentatricopeptide repeat
Genome locationCMiso1.1chr05:25889828..25890751
RNA-Seq ExpressionCmc05g0141961
SyntenyCmc05g0141961
Gene Ontology termsGO:0080156 - mitochondrial mRNA modification (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK18322.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]9.4e-5691.6Show/hide
Query:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
        MNQ YYTI+SFLEKCKTMKELKQI SLMIKTSVV NIIPCSRLIDFCANSELGD EYARTVFD+ DQ TVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
Subjt:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG

Query:  FSPDHFTFPFVLKVCFVID
        F PDHFTFPFVLKVC VID
Subjt:  FSPDHFTFPFVLKVCFVID

XP_004139361.1 putative pentatricopeptide repeat-containing protein At3g05240 [Cucumis sativus]1.9e-5690.76Show/hide
Query:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
        MNQ YYT+MSFLEKCKTMKELKQI SLMI TSVV NIIPCSRLIDFCANSELGD EYARTVFDQI+Q TVY+WNSMIKGYCNGGDKFGALFMYEEMQRKG
Subjt:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG

Query:  FSPDHFTFPFVLKVCFVID
        FSPDHFTFPFVLKVC +ID
Subjt:  FSPDHFTFPFVLKVCFVID

XP_008454853.1 PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucumis melo]9.4e-5691.6Show/hide
Query:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
        MNQ YYTI+SFLEKCKTMKELKQI SLMIKTSVV NIIPCSRLIDFCANSELGD EYARTVFDQ DQ TVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
Subjt:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG

Query:  FSPDHFTFPFVLKVCFVID
        F PDHFTFPFVLKVC  ID
Subjt:  FSPDHFTFPFVLKVCFVID

XP_022999114.1 putative pentatricopeptide repeat-containing protein At3g05240 [Cucurbita maxima]2.4e-5183.19Show/hide
Query:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
        M Q YY+I+SFLEKCKTMKELKQI SLM+ TS + NIIPCSRLIDFCANSELGD EYAR+VFD IDQ +VY+WNSMIKGYCNG DKF ALFMYEEMQRKG
Subjt:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG

Query:  FSPDHFTFPFVLKVCFVID
        FSPDHFTFPFVLKVC +ID
Subjt:  FSPDHFTFPFVLKVCFVID

XP_038886966.1 putative pentatricopeptide repeat-containing protein At3g05240 [Benincasa hispida]2.8e-5284.87Show/hide
Query:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
        M   YY+I+S LEKCKTMKELKQI SLMI TSVV NI+PCSRLIDFCANS+LGD EYARTVF QIDQP+VY+WNSMIKGYCNGGDKF ALFMYEEMQRKG
Subjt:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG

Query:  FSPDHFTFPFVLKVCFVID
        FSPDHFTFPFVLKVC +ID
Subjt:  FSPDHFTFPFVLKVCFVID

TrEMBL top hitse value%identityAlignment
A0A0A0LIL6 Uncharacterized protein9.2e-5790.76Show/hide
Query:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
        MNQ YYT+MSFLEKCKTMKELKQI SLMI TSVV NIIPCSRLIDFCANSELGD EYARTVFDQI+Q TVY+WNSMIKGYCNGGDKFGALFMYEEMQRKG
Subjt:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG

Query:  FSPDHFTFPFVLKVCFVID
        FSPDHFTFPFVLKVC +ID
Subjt:  FSPDHFTFPFVLKVCFVID

A0A1S3C0R4 putative pentatricopeptide repeat-containing protein At3g052404.5e-5691.6Show/hide
Query:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
        MNQ YYTI+SFLEKCKTMKELKQI SLMIKTSVV NIIPCSRLIDFCANSELGD EYARTVFDQ DQ TVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
Subjt:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG

Query:  FSPDHFTFPFVLKVCFVID
        F PDHFTFPFVLKVC  ID
Subjt:  FSPDHFTFPFVLKVCFVID

A0A5A7TWI8 Putative pentatricopeptide repeat-containing protein4.5e-5691.6Show/hide
Query:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
        MNQ YYTI+SFLEKCKTMKELKQI SLMIKTSVV NIIPCSRLIDFCANSELGD EYARTVFDQ DQ TVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
Subjt:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG

Query:  FSPDHFTFPFVLKVCFVID
        F PDHFTFPFVLKVC  ID
Subjt:  FSPDHFTFPFVLKVCFVID

A0A5D3D461 Putative pentatricopeptide repeat-containing protein4.5e-5691.6Show/hide
Query:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
        MNQ YYTI+SFLEKCKTMKELKQI SLMIKTSVV NIIPCSRLIDFCANSELGD EYARTVFD+ DQ TVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
Subjt:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG

Query:  FSPDHFTFPFVLKVCFVID
        F PDHFTFPFVLKVC VID
Subjt:  FSPDHFTFPFVLKVCFVID

Q84KA5 Selenium binding protein-like protein4.5e-5691.6Show/hide
Query:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
        MNQ YYTI+SFLEKCKTMKELKQI SLMIKTSVV NIIPCSRLIDFCANSELGD EYARTVFDQ DQ TVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG
Subjt:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG

Query:  FSPDHFTFPFVLKVCFVID
        F PDHFTFPFVLKVC  ID
Subjt:  FSPDHFTFPFVLKVCFVID

SwissProt top hitse value%identityAlignment
O82380 Pentatricopeptide repeat-containing protein At2g29760, chloroplastic7.8e-1333.02Show/hide
Query:  MSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEM-QRKGFSPDHFT
        +S +E+C ++++LKQ    MI+T   ++    S+L    A S     EYAR VFD+I +P  + WN++I+ Y +G D   +++ + +M       P+ +T
Subjt:  MSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEM-QRKGFSPDHFT

Query:  FPFVLK
        FPF++K
Subjt:  FPFVLK

Q9FJY7 Pentatricopeptide repeat-containing protein At5g665203.2e-1432.76Show/hide
Query:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGD-NEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRK
        +    Y  MS L++C   +ELKQI + M+KT ++ +    ++ + FC +S   D   YA+ VFD  D+P  ++WN MI+G+    +   +L +Y+ M   
Subjt:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGD-NEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRK

Query:  GFSPDHFTFPFVLKVC
            + +TFP +LK C
Subjt:  GFSPDHFTFPFVLKVC

Q9LN01 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic1.9e-1438.05Show/hide
Query:  RYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDN-EYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFS
        R +  +S L  CKT++ L+ I + MIK  + N     S+LI+FC  S   +   YA +VF  I +P + +WN+M +G+    D   AL +Y  M   G  
Subjt:  RYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDN-EYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFS

Query:  PDHFTFPFVLKVC
        P+ +TFPFVLK C
Subjt:  PDHFTFPFVLKVC

Q9MA95 Putative pentatricopeptide repeat-containing protein At3g052403.7e-3155.17Show/hide
Query:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCAN-SELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRK
        M + Y  I+S LE C+++ EL Q+  LMIK+SV+ N+IP SRLIDFC    E  +  YAR+VF+ ID P+VY+WNSMI+GY N  +   AL  Y+EM RK
Subjt:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCAN-SELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRK

Query:  GFSPDHFTFPFVLKVC
        G+SPD+FTFP+VLK C
Subjt:  GFSPDHFTFPFVLKVC

Q9SJZ3 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial2.9e-1537.84Show/hide
Query:  IMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG---FSPD
        ++S LEKCK +  LKQIQ+ MI   ++ +    SRLI FCA SE    +Y+  +   I+ P ++ WN  I+G+    +   +  +Y++M R G     PD
Subjt:  IMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG---FSPD

Query:  HFTFPFVLKVC
        HFT+P + KVC
Subjt:  HFTFPFVLKVC

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.3e-1538.05Show/hide
Query:  RYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDN-EYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFS
        R +  +S L  CKT++ L+ I + MIK  + N     S+LI+FC  S   +   YA +VF  I +P + +WN+M +G+    D   AL +Y  M   G  
Subjt:  RYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDN-EYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFS

Query:  PDHFTFPFVLKVC
        P+ +TFPFVLK C
Subjt:  PDHFTFPFVLKVC

AT2G22410.1 SLOW GROWTH 12.0e-1637.84Show/hide
Query:  IMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG---FSPD
        ++S LEKCK +  LKQIQ+ MI   ++ +    SRLI FCA SE    +Y+  +   I+ P ++ WN  I+G+    +   +  +Y++M R G     PD
Subjt:  IMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKG---FSPD

Query:  HFTFPFVLKVC
        HFT+P + KVC
Subjt:  HFTFPFVLKVC

AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.6e-1433.02Show/hide
Query:  MSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEM-QRKGFSPDHFT
        +S +E+C ++++LKQ    MI+T   ++    S+L    A S     EYAR VFD+I +P  + WN++I+ Y +G D   +++ + +M       P+ +T
Subjt:  MSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEM-QRKGFSPDHFT

Query:  FPFVLK
        FPF++K
Subjt:  FPFVLK

AT3G05240.1 mitochondrial editing factor 192.7e-3255.17Show/hide
Query:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCAN-SELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRK
        M + Y  I+S LE C+++ EL Q+  LMIK+SV+ N+IP SRLIDFC    E  +  YAR+VF+ ID P+VY+WNSMI+GY N  +   AL  Y+EM RK
Subjt:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCAN-SELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRK

Query:  GFSPDHFTFPFVLKVC
        G+SPD+FTFP+VLK C
Subjt:  GFSPDHFTFPFVLKVC

AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.3e-1532.76Show/hide
Query:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGD-NEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRK
        +    Y  MS L++C   +ELKQI + M+KT ++ +    ++ + FC +S   D   YA+ VFD  D+P  ++WN MI+G+    +   +L +Y+ M   
Subjt:  MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGD-NEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRK

Query:  GFSPDHFTFPFVLKVC
            + +TFP +LK C
Subjt:  GFSPDHFTFPFVLKVC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCAGCGTTATTACACTATTATGAGTTTCTTGGAAAAATGCAAAACCATGAAGGAGTTGAAACAAATTCAAAGTCTGATGATCAAAACTTCAGTCGTCAAC
AACATAATCCCTTGCAGCAGACTTATTGATTTTTGCGCAAATTCCGAACTGGGTGACAATGAATATGCAAGAACAGTATTCGATCAAATTGATCAGCCAACTGTC
TACGTCTGGAACTCGATGATTAAAGGGTACTGCAATGGCGGTGACAAGTTTGGAGCTCTGTTTATGTATGAAGAAATGCAGCGTAAAGGCTTCTCCCCGGACCAT
TTCACATTCCCTTTTGTGTTGAAAGTTTGCTTTGTAATCGATTGA
mRNA sequenceShow/hide mRNA sequence
ATTTTCTTTTCTTTAAAAATAAGATACTAACAATGATGTAAAAAGAGGTTTGTAAAGTATTCAAATAGGATCTTTATGATATAAAATCAATTTGTACTAACCTCA
AGATGGAAGGCGAGGGCCGAACTGACGGTGAGGAGGAGACAGACGGCGTCACGGCGAGGATGAGGAGACCGGCGGCGAGAATGAGAAGACGAACTTGAAGGCCGA
TGAGATATAGGATTCGGATCGACGTGGGTCTGTGGGCGAAAATGAGATGGAAATCGATCGGACAGAGAGAGACGAAGGAAAGCAGAAGACGAATCGGCGTGGACT
GGGCGCGTGTTTTTACTTTTCAGTTGAACTTTATATTTTATTAAAAATATAATCTAATATATAATATTTATTTATATATTATATGTTATATTAATTTAGATTCGG
TATATATCGGTTGAATAGTCCGAATTTTGGAATTGATCGGGATTTGATACCTATATCCCCTTCGTATCTTCAACATAATTCTTACTCGATAGTTCACTTCCATAA
TCTTCAATCTCGCATTTCTGGTTAAGAACGAAGATAATGAACCAGCGTTATTACACTATTATGAGTTTCTTGGAAAAATGCAAAACCATGAAGGAGTTGAAACAA
ATTCAAAGTCTGATGATCAAAACTTCAGTCGTCAACAACATAATCCCTTGCAGCAGACTTATTGATTTTTGCGCAAATTCCGAACTGGGTGACAATGAATATGCA
AGAACAGTATTCGATCAAATTGATCAGCCAACTGTCTACGTCTGGAACTCGATGATTAAAGGGTACTGCAATGGCGGTGACAAGTTTGGAGCTCTGTTTATGTAT
GAAGAAATGCAGCGTAAAGGCTTCTCCCCGGACCATTTCACATTCCCTTTTGTGTTGAAAGTTTGCTTTGTAATCGATTGAGTT
Protein sequenceShow/hide protein sequence
MNQRYYTIMSFLEKCKTMKELKQIQSLMIKTSVVNNIIPCSRLIDFCANSELGDNEYARTVFDQIDQPTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDH
FTFPFVLKVCFVID