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Cmc05g0142671 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc05g0142671
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCMiso1.1chr05:26485738..26487730
RNA-Seq ExpressionCmc05g0142671
SyntenyCmc05g0142671
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-0541.79Show/hide
Query:  HEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSV
        HE +NT + LQ+++ N+ L P+ C L K+D E   HIF+ C L K LWDK     G N    D++S+
Subjt:  HEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSV

KAA0050814.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-0540.58Show/hide
Query:  LNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSVVCHYL
        LNT+E +Q++M NS L PN C LCK D ET  H+F  C L K LW   Q         +D +++   +L
Subjt:  LNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSVVCHYL

TYJ98385.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]1.1e-0739.51Show/hide
Query:  SLSKKLHPYL----HEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSV
        S+ KK   +L    HE LN+ + +QR+  N  LNPN C  CKA  E   HIF++C+ AK++W++ +  T  +I  ++VKS+
Subjt:  SLSKKLHPYL----HEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSV

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-0541.79Show/hide
Query:  HEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSV
        HE +NT + LQ+++ N+ L P+ C L K+D E   HIF+ C L K LWDK     G N    D++S+
Subjt:  HEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSV

TYK10888.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.6e-0636.84Show/hide
Query:  LHEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSVVCHYLCNI
        +H+ LNT++N+Q++  N CLNPN C  C++  E   H+F+ C  A  LW+ +   TG  +   +VK  +C  LC +
Subjt:  LHEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSVVCHYLCNI

TrEMBL top hitse value%identityAlignment
A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein1.1e-0541.79Show/hide
Query:  HEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSV
        HE +NT + LQ+++ N+ L P+ C L K+D E   HIF+ C L K LWDK     G N    D++S+
Subjt:  HEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSV

A0A5D3BJ44 Retrotransposon protein, putative, unclassified5.4e-0839.51Show/hide
Query:  SLSKKLHPYL----HEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSV
        S+ KK   +L    HE LN+ + +QR+  N  LNPN C  CKA  E   HIF++C+ AK++W++ +  T  +I  ++VKS+
Subjt:  SLSKKLHPYL----HEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSV

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein1.1e-0541.79Show/hide
Query:  HEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSV
        HE +NT + LQ+++ N+ L P+ C L K+D E   HIF+ C L K LWDK     G N    D++S+
Subjt:  HEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSV

A0A5D3C9J6 LINE-1 retrotransposable element ORF2 protein6.6e-0640.58Show/hide
Query:  LNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSVVCHYL
        LNT+E +Q++M NS L PN C LCK D ET  H+F  C L K LW   Q         +D +++   +L
Subjt:  LNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSVVCHYL

A0A5D3CI43 LINE-1 retrotransposable element ORF2 protein1.7e-0636.84Show/hide
Query:  LHEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSVVCHYLCNI
        +H+ LNT++N+Q++  N CLNPN C  C++  E   H+F+ C  A  LW+ +   TG  +   +VK  +C  LC +
Subjt:  LHEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSVVCHYLCNI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTTTCATAACTTATTTCTTCCCCATCTTCAACTTTCTCTTGTGGTTTACTTTGAATTTTCTCTCTCTAAGAAACTGCACCCATATCTCCACGAAGGGCTTAATAC
TGTTGAGAATTTACAAAGGAAGATGTCGAACTCTTGTCTCAATCCAAATTGCTGTACCTTATGCAAAGCTGATTGTGAAACCAAGGAGCATATCTTCATGGATTGCAAGT
TAGCTAAGTTTCTTTGGGATAAATTTCAGGTGGTGACTGGCCACAATATTATGGGCAATGACGTCAAATCGGTCGTCTGTCACTACCTATGCAATATATAA
mRNA sequenceShow/hide mRNA sequence
TCTCTCTTGTCACCGTCTCCTTAACTATATGGTGCTCCACCCTCCACCTGCATATGGTACTCCACCACCATCAACTCCCGCCTTCTCTCTTCACTGTCTCAGACAGTTTC
CTGTTGGCAACCTCACTACCAACTCCGTCAAAGCTTTGAGTCATCAAGATCGTACATACTCCACCTCCAGCAAAGCCTCCTGAATCTCCTCCTCCTTGATCCAGCGAGAC
CACTTTAATCCTCCCCTTCTGCCGCCACCACTGCCATAACCCACACAAGCCCACATGAGCATTCACCTCCGACCTCCTTTTCTCATCTCAGCGACAACCGCCTTTTTGAT
TGGTACTGCAGTAGCCCTTTGGTTGGGTACTGGAGCAACATTACCCATTGATAACTCCCTAACTTTAGGACTCAATATTGTGTCCATTATACCCATAATGTAGATGCAAA
TTAGCATAGGACACAAGTAAAATAGCGGATCTGATGTTTCACTAAGCCAATGCCCATCACTTGCTTGTATGGCTGCTAGGAAATGTGCTCCTCTTCTCATTGCATTTGAT
GCCTTTTCATAACTTATTTCTTCCCCATCTTCAACTTTCTCTTGTGGTTTACTTTGAATTTTCTCTCTCTAAGAAACTGCACCCATATCTCCACGAAGGGCTTAATACTG
TTGAGAATTTACAAAGGAAGATGTCGAACTCTTGTCTCAATCCAAATTGCTGTACCTTATGCAAAGCTGATTGTGAAACCAAGGAGCATATCTTCATGGATTGCAAGTTA
GCTAAGTTTCTTTGGGATAAATTTCAGGTGGTGACTGGCCACAATATTATGGGCAATGACGTCAAATCGGTCGTCTGTCACTACCTATGCAATATATAAACAAAAGCAAT
AGGAAAAACATCATATACTTCAACCTTGGGGTAGCTATCTTTTAGTCCCTATGGCTCGAAAGAAACAACAGAATCTTCCATGACAATGAGAAGAGTGCGCTTAACTTATC
GAAGGATTCTTGCAACTTACTTACAGAAGTCCTTATTCAAAAATTATCAACCTAGTATGATTGCTCTTAATTTTCAATCATTGTATGACTAATTAACTTTGGGCTTTCCT
CATAGTTTAGATATAGCTGTTTGGTTGTAGTCTTTGAACAATGAGTTCCTACTTGACCATATTCCATTAAAATTCCAATGTCTTCCCATATGTTGACCAAGCCAATATAA
ACATTTGTAAC
Protein sequenceShow/hide protein sequence
MPFHNLFLPHLQLSLVVYFEFSLSKKLHPYLHEGLNTVENLQRKMSNSCLNPNCCTLCKADCETKEHIFMDCKLAKFLWDKFQVVTGHNIMGNDVKSVVCHYLCNI